RNA–Protein interactions for RNA: ENST00000599138.5

VRK3-215, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 503 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-215ENST00000599138 GNA11P29992 359 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 HOXC8P31273 242 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 AK2P54819 239 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 AKAP17AQ02040 695 aaKnown RBP11.09□□□□□ -0.63
VRK3-215ENST00000599138 SSRP1Q08945 709 aaKnown RBP11.09□□□□□ -0.63
VRK3-215ENST00000599138 SCRN1Q12765 414 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 PPIGQ13427 754 aaKnown RBP eCLIP11.09□□□□□ -0.63
VRK3-215ENST00000599138 MTMR1Q13613 665 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 MFSD10Q14728 455 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 ANKRD1Q15327 319 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 KIAA0753Q2KHM9 967 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 CEP55Q53EZ4 464 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 FAM47CQ5HY64 1035 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 MCTP2Q6DN12 878 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 GDF6Q6KF10 455 aaPredicted RBP11.09□□□□□ -0.63
VRK3-215ENST00000599138 GPR153Q6NV75 609 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 TRIM22Q8IYM9 498 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 FAM177A1Q8N128 213 aaPredicted RBP11.09□□□□□ -0.63
VRK3-215ENST00000599138 TMEM199Q8N511 208 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 GIMAP8Q8ND71 665 aaPredicted RBP11.09□□□□□ -0.63
VRK3-215ENST00000599138 CCDC148Q8NFR7 591 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 CYP2W1Q8TAV3 490 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 VWCEQ96DN2 955 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 LRCH3Q96II8 777 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 PGBD1Q96JS3 809 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 MXRA8Q9BRK3 442 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 PPP1R12CQ9BZL4 782 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 WNT8AQ9H1J5 351 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 HDAC6Q9UBN7 1215 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 GTF2IRD1Q9UHL9 959 aa11.09□□□□□ -0.63
VRK3-215ENST00000599138 PITPNM1O00562 1244 aa11.08□□□□□ -0.64
VRK3-215ENST00000599138 CPLX1O14810 134 aa11.08□□□□□ -0.64
VRK3-215ENST00000599138 DEXIO95424 95 aa11.08□□□□□ -0.64
VRK3-215ENST00000599138 LGALS2P05162 132 aa11.08□□□□□ -0.64
VRK3-215ENST00000599138 ARHGAP4P98171 946 aa11.08□□□□□ -0.64
VRK3-215ENST00000599138 RBL2Q08999 1139 aa11.08□□□□□ -0.64
VRK3-215ENST00000599138 STK3Q13188 491 aa11.08□□□□□ -0.64
VRK3-215ENST00000599138 PTGISQ16647 500 aa11.08□□□□□ -0.64
VRK3-215ENST00000599138 TMEM240Q5SV17 173 aa11.08□□□□□ -0.64
VRK3-215ENST00000599138 RASIP1Q5U651 963 aa11.08□□□□□ -0.64
VRK3-215ENST00000599138 JAKMIP3Q5VZ66 844 aa11.08□□□□□ -0.64
VRK3-215ENST00000599138 NIPA1Q7RTP0 329 aa11.08□□□□□ -0.64
VRK3-215ENST00000599138 REXO1Q8N1G1 1221 aaKnown RBP11.08□□□□□ -0.64
VRK3-215ENST00000599138 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.08□□□□□ -0.64
VRK3-215ENST00000599138 SLKQ9H2G2 1235 aaPredicted RBP11.08□□□□□ -0.64
VRK3-215ENST00000599138 IL23AQ9NPF7 189 aa11.08□□□□□ -0.64
VRK3-215ENST00000599138 KCNH7Q9NS40 1196 aa11.08□□□□□ -0.64
VRK3-215ENST00000599138 VPS54Q9P1Q0 977 aa11.08□□□□□ -0.64
VRK3-215ENST00000599138 NFASCO94856 1347 aa11.08□□□□□ -0.64
VRK3-215ENST00000599138 SCN5AQ14524 2016 aa11.08□□□□□ -0.64
VRK3-215ENST00000599138 IGLV3-22A0A075B6J6 115 aa11.07□□□□□ -0.64
VRK3-215ENST00000599138 GSTTP1A0A1W2PQM5 241 aa11.07□□□□□ -0.64
VRK3-215ENST00000599138 FAM86B1E9PN63 330 aa11.07□□□□□ -0.64
VRK3-215ENST00000599138 H3BRB1 525 aa11.07□□□□□ -0.64
VRK3-215ENST00000599138 M0R2N6 131 aa11.07□□□□□ -0.64
VRK3-215ENST00000599138 NOP56O00567 594 aaKnown RBP11.07□□□□□ -0.64
VRK3-215ENST00000599138 EDIL3O43854 480 aa11.07□□□□□ -0.64
VRK3-215ENST00000599138 CTDNEP1O95476 244 aa11.07□□□□□ -0.64
VRK3-215ENST00000599138 FAM86B2P0C5J1 330 aa11.07□□□□□ -0.64
VRK3-215ENST00000599138 ARP10275 920 aa11.07□□□□□ -0.64
VRK3-215ENST00000599138 CIITAP33076 1130 aa11.07□□□□□ -0.64
VRK3-215ENST00000599138 HIC1Q14526 733 aa11.07□□□□□ -0.64
VRK3-215ENST00000599138 NPY5RQ15761 445 aa11.07□□□□□ -0.64
VRK3-215ENST00000599138 CPLX2Q6PUV4 134 aaKnown RBP11.07□□□□□ -0.64
VRK3-215ENST00000599138 C7orf31Q8N865 590 aa11.07□□□□□ -0.64
VRK3-215ENST00000599138 BICD2Q8TD16 824 aa11.07□□□□□ -0.64
VRK3-215ENST00000599138 DHX38Q92620 1227 aaKnown RBP11.07□□□□□ -0.64
VRK3-215ENST00000599138 ALG1Q9BT22 464 aa11.07□□□□□ -0.64
VRK3-215ENST00000599138 TUT1Q9H6E5 874 aaKnown RBP11.07□□□□□ -0.64
VRK3-215ENST00000599138 STK36Q9NRP7 1315 aa11.07□□□□□ -0.64
VRK3-215ENST00000599138 TANC1Q9C0D5 1861 aa11.06□□□□□ -0.64
VRK3-215ENST00000599138 CDKL5O76039 1030 aa11.06□□□□□ -0.64
VRK3-215ENST00000599138 LARGE1O95461 756 aa11.06□□□□□ -0.64
VRK3-215ENST00000599138 NEK4P51957 841 aa11.06□□□□□ -0.64
VRK3-215ENST00000599138 CCL23P55773 120 aa11.06□□□□□ -0.64
VRK3-215ENST00000599138 CHMP4BP1P59074 171 aa11.06□□□□□ -0.64
VRK3-215ENST00000599138 ITGB3BPQ13352 177 aaPredicted RBP11.06□□□□□ -0.64
VRK3-215ENST00000599138 BFSP2Q13515 415 aa11.06□□□□□ -0.64
VRK3-215ENST00000599138 ME3Q16798 604 aa11.06□□□□□ -0.64
VRK3-215ENST00000599138 TRIM71Q2Q1W2 868 aaKnown RBP11.06□□□□□ -0.64
VRK3-215ENST00000599138 PSRC1Q6PGN9 363 aaPredicted RBP11.06□□□□□ -0.64
VRK3-215ENST00000599138 ZNF365Q70YC5 407 aa11.06□□□□□ -0.64
VRK3-215ENST00000599138 TRIM50Q86XT4 487 aa11.06□□□□□ -0.64
VRK3-215ENST00000599138 DAGLBQ8NCG7 672 aa11.06□□□□□ -0.64
VRK3-215ENST00000599138 CAGE1Q8TC20 777 aa11.06□□□□□ -0.64
VRK3-215ENST00000599138 RASGRP4Q8TDF6 673 aa11.06□□□□□ -0.64
VRK3-215ENST00000599138 SEPT1Q8WYJ6 367 aa11.06□□□□□ -0.64
VRK3-215ENST00000599138 SCLYQ96I15 445 aa11.06□□□□□ -0.64
VRK3-215ENST00000599138 RNPC3Q96LT9 517 aaKnown RBP11.06□□□□□ -0.64
VRK3-215ENST00000599138 AIFM3Q96NN9 605 aa11.06□□□□□ -0.64
VRK3-215ENST00000599138 KIF2CQ99661 725 aa11.06□□□□□ -0.64
VRK3-215ENST00000599138 AGO4Q9HCK5 861 aaKnown RBP11.06□□□□□ -0.64
VRK3-215ENST00000599138 JPH1Q9HDC5 661 aaPredicted RBP11.06□□□□□ -0.64
VRK3-215ENST00000599138 PCDHA4Q9UN74 947 aa11.06□□□□□ -0.64
VRK3-215ENST00000599138 DHX15O43143 795 aaKnown RBP11.05□□□□□ -0.64
VRK3-215ENST00000599138 LGR5O75473 907 aa11.05□□□□□ -0.64
VRK3-215ENST00000599138 IQCF3P0C7M6 154 aa11.05□□□□□ -0.64
VRK3-215ENST00000599138 SMIM10L2AP0DMW4 78 aa11.05□□□□□ -0.64
VRK3-215ENST00000599138 SMIM10L2BP0DMW5 78 aa11.05□□□□□ -0.64
VRK3-215ENST00000599138 ACRP10323 421 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms