RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 CLEC4GQ6UXB4 293 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 KIAA0754O94854 1291 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 LDHCP07864 332 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 TTMPQ5BVD1 217 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 CEP85LQ5SZL2 805 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 KLHDC7AQ5VTJ3 777 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 IFT20Q8IY31 132 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 SEPT11Q9NVA2 429 aaKnown RBP16.8■□□□□ 0.28
UPF1-204ENST00000596842 PCDHA12Q9UN75 941 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 ZC3H4Q9UPT8 1303 aaKnown RBP16.8■□□□□ 0.28
UPF1-204ENST00000596842 USP17L15C9J2P7 530 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 USP17L13C9JLJ4 530 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 USP17L11C9JVI0 530 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 USP17L18D6R9N7 530 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 USP17L22D6RA61 530 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 USP17L17D6RBQ6 530 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 USP17L19D6RCP7 530 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 USP17L20D6RJB6 530 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 SEC24CP53992 1094 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 USP17L24Q0WX57 530 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 PDXDC1Q6P996 788 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 USP17L6PQ6QN14 398 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 DDX25Q9UHL0 483 aaKnown RBP16.8■□□□□ 0.28
UPF1-204ENST00000596842 COL4A3BPQ9Y5P4 624 aa16.8■□□□□ 0.28
UPF1-204ENST00000596842 A0A087X0T9 212 aa16.79■□□□□ 0.28
UPF1-204ENST00000596842 POTEB3A0JP26 581 aa16.79■□□□□ 0.28
UPF1-204ENST00000596842 POTECB2RU33 542 aa16.79■□□□□ 0.28
UPF1-204ENST00000596842 FAM228BP0C875 321 aa16.79■□□□□ 0.28
UPF1-204ENST00000596842 COASYQ13057 564 aa16.79■□□□□ 0.28
UPF1-204ENST00000596842 POTEBQ6S5H4 581 aa16.79■□□□□ 0.28
UPF1-204ENST00000596842 TRMT1LQ7Z2T5 733 aaKnown RBP16.79■□□□□ 0.28
UPF1-204ENST00000596842 NYXQ9GZU5 481 aa16.79■□□□□ 0.28
UPF1-204ENST00000596842 GSTO1P78417 241 aa16.79■□□□□ 0.28
UPF1-204ENST00000596842 ZNF804AQ7Z570 1209 aa16.79■□□□□ 0.28
UPF1-204ENST00000596842 TADA2BQ86TJ2 420 aa16.79■□□□□ 0.28
UPF1-204ENST00000596842 GPBP1Q86WP2 473 aa16.79■□□□□ 0.28
UPF1-204ENST00000596842 RAD54LQ92698 747 aa16.79■□□□□ 0.28
UPF1-204ENST00000596842 SARNPP82979 210 aaKnown RBP16.79■□□□□ 0.28
UPF1-204ENST00000596842 MMGT1Q8N4V1 131 aa16.79■□□□□ 0.28
UPF1-204ENST00000596842 PAPPAQ13219 1627 aa16.79■□□□□ 0.28
UPF1-204ENST00000596842 FAM196BA6NMK8 535 aa16.78■□□□□ 0.28
UPF1-204ENST00000596842 INPP5BP32019 993 aa16.78■□□□□ 0.28
UPF1-204ENST00000596842 FKBP3Q00688 224 aaKnown RBP16.78■□□□□ 0.28
UPF1-204ENST00000596842 KCNMA1Q12791 1236 aa16.78■□□□□ 0.28
UPF1-204ENST00000596842 ADAM9Q13443 819 aa16.78■□□□□ 0.28
UPF1-204ENST00000596842 JPH2Q9BR39 696 aaPredicted RBP16.78■□□□□ 0.28
UPF1-204ENST00000596842 LUC7LQ9NQ29 371 aaKnown RBP16.78■□□□□ 0.28
UPF1-204ENST00000596842 USP8P40818 1118 aa16.78■□□□□ 0.28
UPF1-204ENST00000596842 ZSCAN29Q8IWY8 852 aaPredicted RBP16.78■□□□□ 0.28
UPF1-204ENST00000596842 CAPN7Q9Y6W3 813 aa16.78■□□□□ 0.28
UPF1-204ENST00000596842 GOLGA6L10A6NI86 522 aa16.78■□□□□ 0.28
UPF1-204ENST00000596842 GOLGA8KD6RF30 607 aa16.78■□□□□ 0.28
UPF1-204ENST00000596842 GUCY2CP25092 1073 aa16.78■□□□□ 0.28
UPF1-204ENST00000596842 RFC4P35249 363 aa16.78■□□□□ 0.28
UPF1-204ENST00000596842 CYP4A11Q02928 519 aa16.78■□□□□ 0.28
UPF1-204ENST00000596842 GUF1Q8N442 669 aaKnown RBP16.78■□□□□ 0.28
UPF1-204ENST00000596842 BAP1Q92560 729 aa16.78■□□□□ 0.28
UPF1-204ENST00000596842 MAGEF1Q9HAY2 307 aa16.78■□□□□ 0.28
UPF1-204ENST00000596842 PEX19P40855 299 aa16.77■□□□□ 0.28
UPF1-204ENST00000596842 CACNA1SQ13698 1873 aa16.77■□□□□ 0.28
UPF1-204ENST00000596842 RPGRQ92834 1020 aaKnown RBP16.77■□□□□ 0.28
UPF1-204ENST00000596842 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.77■□□□□ 0.281e-9■■■■■ 87.7
UPF1-204ENST00000596842 ASIC2Q16515 512 aa16.77■□□□□ 0.28
UPF1-204ENST00000596842 DAGLBQ8NCG7 672 aa16.77■□□□□ 0.28
UPF1-204ENST00000596842 PURBQ96QR8 312 aaKnown RBP16.77■□□□□ 0.28
UPF1-204ENST00000596842 A0A1W2PQJ5 194 aa16.77■□□□□ 0.27
UPF1-204ENST00000596842 EIF3HO15372 352 aaKnown RBP eCLIP16.77■□□□□ 0.273e-6■■□□□ 12.9
UPF1-204ENST00000596842 SCNN1DP51172 638 aa16.77■□□□□ 0.27
UPF1-204ENST00000596842 PABPC4Q13310 644 aaKnown RBP eCLIP16.77■□□□□ 0.274e-12■■■□□ 18.7
UPF1-204ENST00000596842 AMIGO3Q86WK7 504 aa16.77■□□□□ 0.27
UPF1-204ENST00000596842 OTUD6BQ8N6M0 293 aa16.77■□□□□ 0.27
UPF1-204ENST00000596842 UBLCP1Q8WVY7 318 aaPredicted RBP16.77■□□□□ 0.27
UPF1-204ENST00000596842 RNPC3Q96LT9 517 aaKnown RBP16.77■□□□□ 0.27
UPF1-204ENST00000596842 LZTS2Q9BRK4 669 aa16.77■□□□□ 0.27
UPF1-204ENST00000596842 SPZ1Q9BXG8 430 aa16.77■□□□□ 0.27
UPF1-204ENST00000596842 RTCBQ9Y3I0 505 aaKnown RBP16.77■□□□□ 0.27
UPF1-204ENST00000596842 DISP2A7MBM2 1401 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 SHANK3Q9BYB0 1731 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 SMIM23A6NLE4 172 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 SFI1A8K8P3 1242 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 E7EVH7 732 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 AKR1B1P15121 316 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 TAL1P17542 331 aaPredicted RBP16.76■□□□□ 0.27
UPF1-204ENST00000596842 GTF2IP78347 998 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 BCS1LQ9Y276 419 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 BCL9LQ86UU0 1499 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 TLR2O60603 784 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 NR2F2P24468 414 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 SLC20A2Q08357 652 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 PAK2Q13177 524 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 SLC30A10Q6XR72 485 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 EFCAB13Q8IY85 973 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 DDX47Q9H0S4 455 aaKnown RBP16.76■□□□□ 0.27
UPF1-204ENST00000596842 MYH14Q7Z406 1995 aaKnown RBP16.76■□□□□ 0.27
UPF1-204ENST00000596842 POTEFA5A3E0 1075 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 CLIC2O15247 247 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 POTEIP0CG38 1075 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 PDHBP11177 359 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 SLC9A1P19634 815 aa16.76■□□□□ 0.27
UPF1-204ENST00000596842 PPP1R2P41236 205 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms