RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 HOXC6P09630 235 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 KCNA2P16389 499 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 CTGFP29279 349 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 RGS2P41220 211 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 PSMC4P43686 418 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 C1QTNF8P60827 252 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 SP3Q02447 781 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 KARSQ15046 597 aaKnown RBP16.48■□□□□ 0.23
VRK3-212ENST00000596814 HAUS3Q68CZ6 603 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 MAMDC4Q6UXC1 1216 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 EEPD1Q7L9B9 569 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 FBXO16Q8IX29 292 aaPredicted RBP16.48■□□□□ 0.23
VRK3-212ENST00000596814 ERMNQ8TAM6 284 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 USP6NLQ92738 828 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 DHX58Q96C10 678 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 CALML4Q96GE6 196 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 SDF4Q9BRK5 362 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 MMTAG2Q9BU76 263 aaKnown RBP16.48■□□□□ 0.23
VRK3-212ENST00000596814 PANK2Q9BZ23 570 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 UNC45AQ9H3U1 944 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 CLSTN2Q9H4D0 955 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 DISC1Q9NRI5 854 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 STK24Q9Y6E0 443 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 DHX15O43143 795 aaKnown RBP16.48■□□□□ 0.23
VRK3-212ENST00000596814 KIF22Q14807 665 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 ZRSR1Q15695 479 aaKnown RBP16.48■□□□□ 0.23
VRK3-212ENST00000596814 B3GNT9Q6UX72 402 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 MSL3Q8N5Y2 521 aaKnown RBP16.48■□□□□ 0.23
VRK3-212ENST00000596814 CDK5RAP3Q96JB5 506 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 TRIM47Q96LD4 638 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 TIGD1Q96MW7 591 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 APBA2Q99767 749 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 ARHGAP39Q9C0H5 1083 aa16.48■□□□□ 0.23
VRK3-212ENST00000596814 NFASCO94856 1347 aa16.47■□□□□ 0.23
VRK3-212ENST00000596814 SYNGAP1Q96PV0 1343 aa16.47■□□□□ 0.23
VRK3-212ENST00000596814 KDM3AQ9Y4C1 1321 aa16.47■□□□□ 0.23
VRK3-212ENST00000596814 SLC26A4O43511 780 aa16.47■□□□□ 0.23
VRK3-212ENST00000596814 STAT6P42226 847 aa16.47■□□□□ 0.23
VRK3-212ENST00000596814 IQUBQ8NA54 791 aa16.47■□□□□ 0.23
VRK3-212ENST00000596814 CNNM3Q8NE01 707 aa16.47■□□□□ 0.23
VRK3-212ENST00000596814 TINF2Q9BSI4 451 aa16.47■□□□□ 0.23
VRK3-212ENST00000596814 GZF1Q9H116 711 aaPredicted RBP16.47■□□□□ 0.23
VRK3-212ENST00000596814 TNMDQ9H2S6 317 aa16.47■□□□□ 0.23
VRK3-212ENST00000596814 VTA1Q9NP79 307 aa16.47■□□□□ 0.23
VRK3-212ENST00000596814 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.47■□□□□ 0.23
VRK3-212ENST00000596814 SAGE1Q9NXZ1 904 aa16.47■□□□□ 0.23
VRK3-212ENST00000596814 USP25Q9UHP3 1055 aa16.47■□□□□ 0.23
VRK3-212ENST00000596814 GJD2Q9UKL4 321 aa16.47■□□□□ 0.23
VRK3-212ENST00000596814 EML1O00423 815 aa16.46■□□□□ 0.23
VRK3-212ENST00000596814 ACTN4O43707 911 aaKnown RBP16.46■□□□□ 0.23
VRK3-212ENST00000596814 TGFB3P10600 412 aa16.46■□□□□ 0.23
VRK3-212ENST00000596814 PLCG1P19174 1290 aa16.46■□□□□ 0.23
VRK3-212ENST00000596814 CCT6AP40227 531 aaKnown RBP16.46■□□□□ 0.23
VRK3-212ENST00000596814 KRT76Q01546 638 aa16.46■□□□□ 0.23
VRK3-212ENST00000596814 E2F4Q16254 413 aa16.46■□□□□ 0.23
VRK3-212ENST00000596814 LONRF3Q496Y0 759 aa16.46■□□□□ 0.23
VRK3-212ENST00000596814 RRAGBQ5VZM2 374 aa16.46■□□□□ 0.23
VRK3-212ENST00000596814 KCNV1Q6PIU1 500 aa16.46■□□□□ 0.23
VRK3-212ENST00000596814 KRBA2Q6ZNG9 492 aa16.46■□□□□ 0.23
VRK3-212ENST00000596814 CEP57L1Q8IYX8 460 aa16.46■□□□□ 0.23
VRK3-212ENST00000596814 SENP7Q9BQF6 1050 aa16.46■□□□□ 0.23
VRK3-212ENST00000596814 SERTAD1Q9UHV2 236 aa16.46■□□□□ 0.23
VRK3-212ENST00000596814 CASP8AP2Q9UKL3 1982 aa16.46■□□□□ 0.23
VRK3-212ENST00000596814 CYP2B6P20813 491 aa16.45■□□□□ 0.22
VRK3-212ENST00000596814 UBA1P22314 1058 aaKnown RBP16.45■□□□□ 0.22
VRK3-212ENST00000596814 CAMK4Q16566 473 aa16.45■□□□□ 0.22
VRK3-212ENST00000596814 MIER3Q7Z3K6 550 aa16.45■□□□□ 0.22
VRK3-212ENST00000596814 PLIN2Q99541 437 aa16.45■□□□□ 0.22
VRK3-212ENST00000596814 EIF2AK1Q9BQI3 630 aaKnown RBP16.45■□□□□ 0.22
VRK3-212ENST00000596814 JPH1Q9HDC5 661 aaPredicted RBP16.45■□□□□ 0.22
VRK3-212ENST00000596814 GPR25O00155 361 aa16.45■□□□□ 0.22
VRK3-212ENST00000596814 CTAGE5O15320 804 aa16.45■□□□□ 0.22
VRK3-212ENST00000596814 JAK3P52333 1124 aa16.45■□□□□ 0.22
VRK3-212ENST00000596814 SP2Q02086 613 aa16.45■□□□□ 0.22
VRK3-212ENST00000596814 GRB10Q13322 594 aa16.45■□□□□ 0.22
VRK3-212ENST00000596814 EPHA7Q15375 998 aa16.45■□□□□ 0.22
VRK3-212ENST00000596814 ZSCAN23Q3MJ62 389 aa16.45■□□□□ 0.22
VRK3-212ENST00000596814 TMEM119Q4V9L6 283 aa16.45■□□□□ 0.22
VRK3-212ENST00000596814 HYIQ5T013 277 aa16.45■□□□□ 0.22
VRK3-212ENST00000596814 ZNF746Q6NUN9 644 aaPredicted RBP16.45■□□□□ 0.22
VRK3-212ENST00000596814 GIMAP8Q8ND71 665 aaPredicted RBP16.45■□□□□ 0.22
VRK3-212ENST00000596814 SCFD2Q8WU76 684 aa16.45■□□□□ 0.22
VRK3-212ENST00000596814 CCDC34Q96HJ3 373 aa16.45■□□□□ 0.22
VRK3-212ENST00000596814 PNMA5Q96PV4 448 aa16.45■□□□□ 0.22
VRK3-212ENST00000596814 ANP32EQ9BTT0 268 aa16.45■□□□□ 0.22
VRK3-212ENST00000596814 NT5C3AQ9H0P0 336 aa16.45■□□□□ 0.22
VRK3-212ENST00000596814 POTEB3A0JP26 581 aa16.44■□□□□ 0.22
VRK3-212ENST00000596814 WDR64B1ANS9 1081 aa16.44■□□□□ 0.22
VRK3-212ENST00000596814 MED24O75448 989 aa16.44■□□□□ 0.22
VRK3-212ENST00000596814 ARIH2O95376 493 aa16.44■□□□□ 0.22
VRK3-212ENST00000596814 SNAI1O95863 264 aaPredicted RBP16.44■□□□□ 0.22
VRK3-212ENST00000596814 SLFN14P0C7P3 912 aa16.44■□□□□ 0.22
VRK3-212ENST00000596814 RPA1P27694 616 aa16.44■□□□□ 0.22
VRK3-212ENST00000596814 SFNP31947 248 aa16.44■□□□□ 0.22
VRK3-212ENST00000596814 NEDD9Q14511 834 aa16.44■□□□□ 0.22
VRK3-212ENST00000596814 TTLL4Q14679 1199 aa16.44■□□□□ 0.22
VRK3-212ENST00000596814 OLFML2BQ68BL8 750 aa16.44■□□□□ 0.22
VRK3-212ENST00000596814 KANK3Q6NY19 840 aa16.44■□□□□ 0.22
VRK3-212ENST00000596814 POTEBQ6S5H4 581 aa16.44■□□□□ 0.22
VRK3-212ENST00000596814 NEK9Q8TD19 979 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms