RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.29■□□□□ 0.84
SHKBP1-204ENST00000594862 ANO3Q9BYT9 981 aa20.29■□□□□ 0.84
SHKBP1-204ENST00000594862 WNT8AQ9H1J5 351 aa20.29■□□□□ 0.84
SHKBP1-204ENST00000594862 JADE2Q9NQC1 790 aa20.29■□□□□ 0.84
SHKBP1-204ENST00000594862 UBIAD1Q9Y5Z9 338 aa20.29■□□□□ 0.84
SHKBP1-204ENST00000594862 TMEM265A0A087WTH1 108 aa20.28■□□□□ 0.84
SHKBP1-204ENST00000594862 CYP2C9P11712 490 aa20.28■□□□□ 0.84
SHKBP1-204ENST00000594862 SEMA3FQ13275 785 aa20.28■□□□□ 0.84
SHKBP1-204ENST00000594862 TOB2Q14106 344 aaPredicted RBP20.28■□□□□ 0.84
SHKBP1-204ENST00000594862 TMEM240Q5SV17 173 aa20.28■□□□□ 0.84
SHKBP1-204ENST00000594862 CYFIP1Q7L576 1253 aa20.28■□□□□ 0.84
SHKBP1-204ENST00000594862 FAM177A1Q8N128 213 aaPredicted RBP20.28■□□□□ 0.84
SHKBP1-204ENST00000594862 AFAP1L1Q8TED9 768 aa20.28■□□□□ 0.84
SHKBP1-204ENST00000594862 ZMYND12Q9H0C1 365 aa20.28■□□□□ 0.84
SHKBP1-204ENST00000594862 PDRG1Q9NUG6 133 aa20.28■□□□□ 0.84
SHKBP1-204ENST00000594862 UMODL1Q5DID0 1318 aa20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 H3BRB1 525 aa20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 CPLX1O14810 134 aa20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 FGBP02675 491 aa20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 LGALS2P05162 132 aa20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 ITGB5P18084 799 aa20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 SREBF1P36956 1147 aa20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 CLK2P49760 499 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 CCL23P55773 120 aa20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 RBL2Q08999 1139 aa20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 ZNF697Q5TEC3 545 aa20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 REXO1Q8N1G1 1221 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 HERVK_113Q902F9 699 aa20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 GPR20Q99678 358 aa20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 C16orf70Q9BSU1 422 aa20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 ALG1Q9BT22 464 aa20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 UPF3BQ9BZI7 483 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 TUT1Q9H6E5 874 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 MTMR10Q9NXD2 777 aa20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 HDAC6Q9UBN7 1215 aa20.27■□□□□ 0.84
SHKBP1-204ENST00000594862 ACTN1P12814 892 aa20.26■□□□□ 0.83
SHKBP1-204ENST00000594862 PTK7Q13308 1070 aa20.26■□□□□ 0.83
SHKBP1-204ENST00000594862 ANKRD1Q15327 319 aa20.26■□□□□ 0.83
SHKBP1-204ENST00000594862 NTRK3Q16288 839 aa20.26■□□□□ 0.83
SHKBP1-204ENST00000594862 RASIP1Q5U651 963 aa20.26■□□□□ 0.83
SHKBP1-204ENST00000594862 GDF6Q6KF10 455 aaPredicted RBP20.26■□□□□ 0.83
SHKBP1-204ENST00000594862 ZNF365Q70YC5 407 aa20.26■□□□□ 0.83
SHKBP1-204ENST00000594862 MXRA8Q9BRK3 442 aa20.26■□□□□ 0.83
SHKBP1-204ENST00000594862 SLC26A6Q9BXS9 759 aa20.26■□□□□ 0.83
SHKBP1-204ENST00000594862 SH3GLB2Q9NR46 395 aa20.26■□□□□ 0.83
SHKBP1-204ENST00000594862 SORBS3O60504 671 aa20.25■□□□□ 0.83
SHKBP1-204ENST00000594862 CDKL5O76039 1030 aa20.25■□□□□ 0.83
SHKBP1-204ENST00000594862 GNAT1P11488 350 aa20.25■□□□□ 0.83
SHKBP1-204ENST00000594862 KCNA2P16389 499 aa20.25■□□□□ 0.83
SHKBP1-204ENST00000594862 PKN1Q16512 942 aa20.25■□□□□ 0.83
SHKBP1-204ENST00000594862 CEP55Q53EZ4 464 aa20.25■□□□□ 0.83
SHKBP1-204ENST00000594862 C16orf59Q7L2K0 433 aa20.25■□□□□ 0.83
SHKBP1-204ENST00000594862 NIPA1Q7RTP0 329 aa20.25■□□□□ 0.83
SHKBP1-204ENST00000594862 PHKBQ93100 1093 aa20.25■□□□□ 0.83
SHKBP1-204ENST00000594862 ACRP10323 421 aa20.24■□□□□ 0.83
SHKBP1-204ENST00000594862 CCT2P78371 535 aaKnown RBP20.24■□□□□ 0.83
SHKBP1-204ENST00000594862 SSRP1Q08945 709 aaKnown RBP20.24■□□□□ 0.83
SHKBP1-204ENST00000594862 IL17RAQ96F46 866 aa20.24■□□□□ 0.83
SHKBP1-204ENST00000594862 SDF4Q9BRK5 362 aa20.24■□□□□ 0.83
SHKBP1-204ENST00000594862 JPH1Q9HDC5 661 aaPredicted RBP20.24■□□□□ 0.83
SHKBP1-204ENST00000594862 STXBP5LQ9Y2K9 1186 aa20.24■□□□□ 0.83
SHKBP1-204ENST00000594862 DOCK5Q9H7D0 1870 aa20.24■□□□□ 0.83
SHKBP1-204ENST00000594862 NFASCO94856 1347 aa20.24■□□□□ 0.83
SHKBP1-204ENST00000594862 EYSQ5T1H1 3165 aa20.23■□□□□ 0.83
SHKBP1-204ENST00000594862 C17orf102A2RUQ5 167 aa20.23■□□□□ 0.83
SHKBP1-204ENST00000594862 DEXIO95424 95 aa20.23■□□□□ 0.83
SHKBP1-204ENST00000594862 IQCF3P0C7M6 154 aa20.23■□□□□ 0.83
SHKBP1-204ENST00000594862 SELPP16109 830 aa20.23■□□□□ 0.83
SHKBP1-204ENST00000594862 ZNF76P36508 570 aa20.23■□□□□ 0.83
SHKBP1-204ENST00000594862 ARHGAP4P98171 946 aa20.23■□□□□ 0.83
SHKBP1-204ENST00000594862 SEPT1Q8WYJ6 367 aa20.23■□□□□ 0.83
SHKBP1-204ENST00000594862 SCLYQ96I15 445 aa20.23■□□□□ 0.83
SHKBP1-204ENST00000594862 C22orf23Q9BZE7 217 aa20.23■□□□□ 0.83
SHKBP1-204ENST00000594862 NCOA5Q9HCD5 579 aaKnown RBP20.23■□□□□ 0.83
SHKBP1-204ENST00000594862 KCNH7Q9NS40 1196 aa20.23■□□□□ 0.83
SHKBP1-204ENST00000594862 CAND2O75155 1236 aa20.22■□□□□ 0.83
SHKBP1-204ENST00000594862 CYP3A4P08684 503 aa20.22■□□□□ 0.83
SHKBP1-204ENST00000594862 HOXC8P31273 242 aa20.22■□□□□ 0.83
SHKBP1-204ENST00000594862 TCF7P36402 384 aaPredicted RBP20.22■□□□□ 0.83
SHKBP1-204ENST00000594862 SETQ01105 290 aaPredicted RBP20.22■□□□□ 0.83
SHKBP1-204ENST00000594862 SP4Q02446 784 aa20.22■□□□□ 0.83
SHKBP1-204ENST00000594862 RAB30Q15771 203 aa20.22■□□□□ 0.83
SHKBP1-204ENST00000594862 LRRC8DQ7L1W4 858 aa20.22■□□□□ 0.83
SHKBP1-204ENST00000594862 TNPO1Q92973 898 aaKnown RBP20.22■□□□□ 0.83
SHKBP1-204ENST00000594862 TMEM260Q9NX78 707 aa20.22■□□□□ 0.83
SHKBP1-204ENST00000594862 EMSYQ7Z589 1322 aa20.22■□□□□ 0.83
SHKBP1-204ENST00000594862 MEIS1O00470 390 aa20.21■□□□□ 0.83
SHKBP1-204ENST00000594862 ATP9AO75110 1047 aa20.21■□□□□ 0.83
SHKBP1-204ENST00000594862 SMIM10L2AP0DMW4 78 aa20.21■□□□□ 0.83
SHKBP1-204ENST00000594862 SMIM10L2BP0DMW5 78 aa20.21■□□□□ 0.83
SHKBP1-204ENST00000594862 UTP14CQ5TAP6 766 aaKnown RBP20.21■□□□□ 0.83
SHKBP1-204ENST00000594862 JAKMIP3Q5VZ66 844 aa20.21■□□□□ 0.83
SHKBP1-204ENST00000594862 SERINC5Q86VE9 423 aa20.21■□□□□ 0.83
SHKBP1-204ENST00000594862 PPP1R13LQ8WUF5 828 aa20.21■□□□□ 0.83
SHKBP1-204ENST00000594862 PGBD1Q96JS3 809 aa20.21■□□□□ 0.83
SHKBP1-204ENST00000594862 CTAGE1Q96RT6 745 aa20.21■□□□□ 0.83
SHKBP1-204ENST00000594862 SMARCAD1Q9H4L7 1026 aa20.21■□□□□ 0.83
SHKBP1-204ENST00000594862 ERAP1Q9NZ08 941 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms