RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 CIITAP33076 1130 aa17.1■□□□□ 0.33
UPF1-202ENST00000594243 PTPN11Q06124 597 aaPredicted RBP17.1■□□□□ 0.33
UPF1-202ENST00000594243 FAAP100Q0VG06 881 aa17.1■□□□□ 0.33
UPF1-202ENST00000594243 NPY5RQ15761 445 aa17.1■□□□□ 0.33
UPF1-202ENST00000594243 NFRKBQ6P4R8 1299 aa17.1■□□□□ 0.33
UPF1-202ENST00000594243 KRT25Q7Z3Z0 450 aa17.1■□□□□ 0.33
UPF1-202ENST00000594243 PLA2G4DQ86XP0 818 aa17.1■□□□□ 0.33
UPF1-202ENST00000594243 FAM126BQ8IXS8 530 aa17.1■□□□□ 0.33
UPF1-202ENST00000594243 TBCKQ8TEA7 893 aa17.1■□□□□ 0.33
UPF1-202ENST00000594243 SDF4Q9BRK5 362 aa17.1■□□□□ 0.33
UPF1-202ENST00000594243 BCAS3Q9H6U6 928 aa17.1■□□□□ 0.33
UPF1-202ENST00000594243 PRDM5Q9NQX1 630 aaPredicted RBP17.1■□□□□ 0.33
UPF1-202ENST00000594243 TMEM39AQ9NV64 488 aa17.1■□□□□ 0.33
UPF1-202ENST00000594243 GRIN2DO15399 1336 aa17.1■□□□□ 0.33
UPF1-202ENST00000594243 ALPK3Q96L96 1907 aa17.09■□□□□ 0.33
UPF1-202ENST00000594243 FAM86B1E9PN63 330 aa17.09■□□□□ 0.33
UPF1-202ENST00000594243 FAM86B2P0C5J1 330 aa17.09■□□□□ 0.33
UPF1-202ENST00000594243 SUPT20HL2P0C7V6 817 aa17.09■□□□□ 0.33
UPF1-202ENST00000594243 SETQ01105 290 aaPredicted RBP17.09■□□□□ 0.33
UPF1-202ENST00000594243 NONOQ15233 471 aaKnown RBP eCLIP17.09■□□□□ 0.33
UPF1-202ENST00000594243 NBPF20Q3BBV1 942 aa17.09■□□□□ 0.33
UPF1-202ENST00000594243 GPR20Q99678 358 aa17.09■□□□□ 0.33
UPF1-202ENST00000594243 LBHD1Q9BQE6 289 aaPredicted RBP17.09■□□□□ 0.33
UPF1-202ENST00000594243 AGO4Q9HCK5 861 aaKnown RBP17.09■□□□□ 0.33
UPF1-202ENST00000594243 PDLIM7Q9NR12 457 aa17.09■□□□□ 0.33
UPF1-202ENST00000594243 GJB4Q9NTQ9 266 aa17.09■□□□□ 0.33
UPF1-202ENST00000594243 PKD2L1Q9P0L9 805 aa17.09■□□□□ 0.33
UPF1-202ENST00000594243 NFASCO94856 1347 aa17.09■□□□□ 0.33
UPF1-202ENST00000594243 IGLV3-22A0A075B6J6 115 aa17.08■□□□□ 0.32
UPF1-202ENST00000594243 CCDC194A0A1B0GVG4 234 aa17.08■□□□□ 0.32
UPF1-202ENST00000594243 CD4P01730 458 aa17.08■□□□□ 0.32
UPF1-202ENST00000594243 KRT2P35908 639 aa17.08■□□□□ 0.32
UPF1-202ENST00000594243 CHMP4BP1P59074 171 aa17.08■□□□□ 0.32
UPF1-202ENST00000594243 FAM47CQ5HY64 1035 aa17.08■□□□□ 0.32
UPF1-202ENST00000594243 FAM184AQ8NB25 1140 aa17.08■□□□□ 0.32
UPF1-202ENST00000594243 SEPT1Q8WYJ6 367 aa17.08■□□□□ 0.32
UPF1-202ENST00000594243 KAT2BQ92831 832 aa17.08■□□□□ 0.32
UPF1-202ENST00000594243 H3BRB1 525 aa17.07■□□□□ 0.32
UPF1-202ENST00000594243 KIAA0355O15063 1070 aa17.07■□□□□ 0.32
UPF1-202ENST00000594243 F2P00734 622 aa17.07■□□□□ 0.32
UPF1-202ENST00000594243 MMP1P03956 469 aa17.07■□□□□ 0.32
UPF1-202ENST00000594243 RAG1P15918 1043 aa17.07■□□□□ 0.32
UPF1-202ENST00000594243 PSEN2P49810 448 aa17.07■□□□□ 0.32
UPF1-202ENST00000594243 SP4Q02446 784 aa17.07■□□□□ 0.32
UPF1-202ENST00000594243 MFSD10Q14728 455 aa17.07■□□□□ 0.32
UPF1-202ENST00000594243 PRR16Q569H4 304 aa17.07■□□□□ 0.32
UPF1-202ENST00000594243 SH3RF1Q7Z6J0 888 aa17.07■□□□□ 0.32
UPF1-202ENST00000594243 C7orf31Q8N865 590 aa17.07■□□□□ 0.32
UPF1-202ENST00000594243 TMX3Q96JJ7 454 aa17.07■□□□□ 0.32
UPF1-202ENST00000594243 ZNF577Q9BSK1 485 aa17.07■□□□□ 0.32
UPF1-202ENST00000594243 C16orf70Q9BSU1 422 aa17.07■□□□□ 0.32
UPF1-202ENST00000594243 TUT1Q9H6E5 874 aaKnown RBP17.07■□□□□ 0.32
UPF1-202ENST00000594243 JPH1Q9HDC5 661 aaPredicted RBP17.07■□□□□ 0.32
UPF1-202ENST00000594243 TBC1D22BQ9NU19 505 aa17.07■□□□□ 0.32
UPF1-202ENST00000594243 SLC9A2Q9UBY0 812 aa17.07■□□□□ 0.32
UPF1-202ENST00000594243 TRIM43BA6NCK2 446 aa17.06■□□□□ 0.32
UPF1-202ENST00000594243 HAS3O00219 553 aa17.06■□□□□ 0.32
UPF1-202ENST00000594243 IPO5O00410 1097 aaKnown RBP17.06■□□□□ 0.32
UPF1-202ENST00000594243 B4GALT4O60513 344 aa17.06■□□□□ 0.32
UPF1-202ENST00000594243 CD2BP2O95400 341 aaKnown RBP17.06■□□□□ 0.32
UPF1-202ENST00000594243 LGALS2P05162 132 aa17.06■□□□□ 0.32
UPF1-202ENST00000594243 ZNF286BP0CG31 522 aa17.06■□□□□ 0.32
UPF1-202ENST00000594243 TCF7P36402 384 aaPredicted RBP17.06■□□□□ 0.32
UPF1-202ENST00000594243 SAFBQ15424 915 aaKnown RBP eCLIP17.06■□□□□ 0.32
UPF1-202ENST00000594243 KIAA0753Q2KHM9 967 aa17.06■□□□□ 0.32
UPF1-202ENST00000594243 KRT40Q6A162 431 aa17.06■□□□□ 0.32
UPF1-202ENST00000594243 MOXD1Q6UVY6 613 aa17.06■□□□□ 0.32
UPF1-202ENST00000594243 SESTD1Q86VW0 696 aa17.06■□□□□ 0.32
UPF1-202ENST00000594243 TRIM43Q96BQ3 446 aaPredicted RBP17.06■□□□□ 0.32
UPF1-202ENST00000594243 C8orf76Q96K31 380 aa17.06■□□□□ 0.32
UPF1-202ENST00000594243 NAP1L4Q99733 375 aaKnown RBP17.06■□□□□ 0.32
UPF1-202ENST00000594243 ZNF215Q9UL58 517 aaPredicted RBP17.06■□□□□ 0.32
UPF1-202ENST00000594243 KIF3AQ9Y496 699 aa17.06■□□□□ 0.32
UPF1-202ENST00000594243 MYH7BA7E2Y1 1941 aa17.06■□□□□ 0.32
UPF1-202ENST00000594243 CYP3A7-CYP3A51PA0A087WV96 503 aa17.05■□□□□ 0.32
UPF1-202ENST00000594243 GSTTP1A0A1W2PQM5 241 aa17.05■□□□□ 0.32
UPF1-202ENST00000594243 CYP3A7P24462 503 aa17.05■□□□□ 0.32
UPF1-202ENST00000594243 BMP8BP34820 402 aa17.05■□□□□ 0.32
UPF1-202ENST00000594243 INF2Q27J81 1249 aa17.05■□□□□ 0.32
UPF1-202ENST00000594243 Q4G0T1 1027 aa17.05■□□□□ 0.32
UPF1-202ENST00000594243 UTP14CQ5TAP6 766 aaKnown RBP17.05■□□□□ 0.32
UPF1-202ENST00000594243 CHRDL2Q6WN34 429 aa17.05■□□□□ 0.32
UPF1-202ENST00000594243 PIK3AP1Q6ZUJ8 805 aa17.05■□□□□ 0.32
UPF1-202ENST00000594243 OXER1Q8TDS5 423 aa17.05■□□□□ 0.32
UPF1-202ENST00000594243 GDF15Q99988 308 aa17.05■□□□□ 0.32
UPF1-202ENST00000594243 TRPV6Q9H1D0 765 aa17.05■□□□□ 0.32
UPF1-202ENST00000594243 TCEAL9Q9UHQ7 104 aa17.05■□□□□ 0.32
UPF1-202ENST00000594243 TBX21Q9UL17 535 aa17.05■□□□□ 0.32
UPF1-202ENST00000594243 EDIL3O43854 480 aa17.04■□□□□ 0.32
UPF1-202ENST00000594243 TIMP1P01033 207 aa17.04■□□□□ 0.32
UPF1-202ENST00000594243 MAGEA10P43363 369 aaPredicted RBP17.04■□□□□ 0.32
UPF1-202ENST00000594243 MDM2Q00987 491 aaPredicted RBP17.04■□□□□ 0.32
UPF1-202ENST00000594243 ITGB3BPQ13352 177 aaPredicted RBP17.04■□□□□ 0.32
UPF1-202ENST00000594243 LETM2Q2VYF4 491 aa17.04■□□□□ 0.32
UPF1-202ENST00000594243 NEK8Q86SG6 692 aa17.04■□□□□ 0.32
UPF1-202ENST00000594243 DIS3L2Q8IYB7 885 aaKnown RBP17.04■□□□□ 0.32
UPF1-202ENST00000594243 SMARCAD1Q9H4L7 1026 aa17.04■□□□□ 0.32
UPF1-202ENST00000594243 GTF2IRD1Q9UHL9 959 aa17.04■□□□□ 0.32
UPF1-202ENST00000594243 NOD1Q9Y239 953 aa17.04■□□□□ 0.32
UPF1-202ENST00000594243 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms