RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 SPATA31C2B4DYI2 1134 aa27.62■■■□□ 2.01
LSM4-202ENST00000593564 NOP56O00567 594 aaKnown RBP27.62■■■□□ 2.01
LSM4-202ENST00000593564 LPXNO60711 386 aa27.62■■■□□ 2.01
LSM4-202ENST00000593564 BMP1P13497 986 aa27.62■■■□□ 2.01
LSM4-202ENST00000593564 ZNF654Q8IZM8 581 aa27.62■■■□□ 2.01
LSM4-202ENST00000593564 CTCFLQ8NI51 663 aaPredicted RBP27.62■■■□□ 2.01
LSM4-202ENST00000593564 BCAS3Q9H6U6 928 aa27.62■■■□□ 2.01
LSM4-202ENST00000593564 SMIM10L2AP0DMW4 78 aa27.61■■■□□ 2.01
LSM4-202ENST00000593564 SMIM10L2BP0DMW5 78 aa27.61■■■□□ 2.01
LSM4-202ENST00000593564 SMARCA1P28370 1054 aa27.61■■■□□ 2.01
LSM4-202ENST00000593564 KIF5BP33176 963 aa27.61■■■□□ 2.01
LSM4-202ENST00000593564 THPOP40225 353 aa27.61■■■□□ 2.01
LSM4-202ENST00000593564 SEMA3FQ13275 785 aa27.61■■■□□ 2.01
LSM4-202ENST00000593564 ATP6V0A1Q93050 837 aa27.61■■■□□ 2.01
LSM4-202ENST00000593564 RRP36Q96EU6 259 aaKnown RBP27.61■■■□□ 2.01
LSM4-202ENST00000593564 COG5Q9UP83 839 aa27.61■■■□□ 2.01
LSM4-202ENST00000593564 RSPH10B2B2RC85 870 aa27.6■■■□□ 2.01
LSM4-202ENST00000593564 FIBPO43427 364 aa27.6■■■□□ 2.01
LSM4-202ENST00000593564 RSPH10BP0C881 870 aa27.6■■■□□ 2.01
LSM4-202ENST00000593564 MYL10Q9BUA6 226 aa27.6■■■□□ 2.01
LSM4-202ENST00000593564 USP26Q9BXU7 913 aa27.6■■■□□ 2.01
LSM4-202ENST00000593564 PIK3CDO00329 1044 aa27.59■■■□□ 2.01
LSM4-202ENST00000593564 MKRN4PQ13434 485 aaPredicted RBP27.59■■■□□ 2.01
LSM4-202ENST00000593564 XRRA1Q6P2D8 792 aa27.59■■■□□ 2.01
LSM4-202ENST00000593564 CASC1Q6TDU7 716 aa27.59■■■□□ 2.01
LSM4-202ENST00000593564 CYFIP1Q7L576 1253 aa27.59■■■□□ 2.01
LSM4-202ENST00000593564 SMARCC2Q8TAQ2 1214 aa27.59■■■□□ 2.01
LSM4-202ENST00000593564 CUL5Q93034 780 aa27.59■■■□□ 2.01
LSM4-202ENST00000593564 GPR20Q99678 358 aa27.59■■■□□ 2.01
LSM4-202ENST00000593564 LZTS2Q9BRK4 669 aa27.59■■■□□ 2.01
LSM4-202ENST00000593564 RTEL1Q9NZ71 1219 aa27.59■■■□□ 2.01
LSM4-202ENST00000593564 LMCD1Q9NZU5 365 aa27.59■■■□□ 2.01
LSM4-202ENST00000593564 CAND2O75155 1236 aa27.58■■■□□ 2.01
LSM4-202ENST00000593564 GNAQP50148 359 aa27.58■■■□□ 2.01
LSM4-202ENST00000593564 KCNQ1P51787 676 aa27.58■■■□□ 2.01
LSM4-202ENST00000593564 ERVK-21P61565 698 aa27.58■■■□□ 2.01
LSM4-202ENST00000593564 PCNX4Q63HM2 1172 aa27.58■■■□□ 2.01
LSM4-202ENST00000593564 USP17L6PQ6QN14 398 aa27.58■■■□□ 2.01
LSM4-202ENST00000593564 DBF4BQ8NFT6 615 aa27.58■■■□□ 2.01
LSM4-202ENST00000593564 TGS1Q96RS0 853 aaKnown RBP27.58■■■□□ 2.01
LSM4-202ENST00000593564 SENP7Q9BQF6 1050 aa27.58■■■□□ 2.01
LSM4-202ENST00000593564 RNPEPQ9H4A4 650 aa27.58■■■□□ 2.01
LSM4-202ENST00000593564 SEC63Q9UGP8 760 aaKnown RBP27.58■■■□□ 2.01
LSM4-202ENST00000593564 LINC01553A4QN01 128 aa27.57■■■□□ 2
LSM4-202ENST00000593564 MEIS2O14770 477 aa27.57■■■□□ 2
LSM4-202ENST00000593564 TREHO43280 583 aa27.57■■■□□ 2
LSM4-202ENST00000593564 PRC1O43663 620 aa27.57■■■□□ 2
LSM4-202ENST00000593564 IRX6P78412 446 aaPredicted RBP27.57■■■□□ 2
LSM4-202ENST00000593564 PLEKHG4Q58EX7 1191 aa27.57■■■□□ 2
LSM4-202ENST00000593564 LIN28BQ6ZN17 250 aaKnown RBP eCLIP27.57■■■□□ 2
LSM4-202ENST00000593564 TMTC2Q8N394 836 aa27.57■■■□□ 2
LSM4-202ENST00000593564 GDPD5Q8WTR4 605 aa27.57■■■□□ 2
LSM4-202ENST00000593564 COL4A4P53420 1690 aaPredicted RBP27.56■■■□□ 2
LSM4-202ENST00000593564 MCM5P33992 734 aa27.56■■■□□ 2
LSM4-202ENST00000593564 FAM117BQ6P1L5 589 aa27.56■■■□□ 2
LSM4-202ENST00000593564 TMEM87BQ96K49 555 aa27.56■■■□□ 2
LSM4-202ENST00000593564 NECAB3Q96P71 396 aaPredicted RBP27.56■■■□□ 2
LSM4-202ENST00000593564 INSL6Q9Y581 213 aa27.56■■■□□ 2
LSM4-202ENST00000593564 RBAK-RBAKDNI3L0D1 243 aa27.55■■■□□ 2
LSM4-202ENST00000593564 SH2B2O14492 632 aaPredicted RBP27.55■■■□□ 2
LSM4-202ENST00000593564 AMHP03971 560 aa27.55■■■□□ 2
LSM4-202ENST00000593564 GNAT1P11488 350 aa27.55■■■□□ 2
LSM4-202ENST00000593564 SRBD1Q8N5C6 995 aaKnown RBP27.55■■■□□ 2
LSM4-202ENST00000593564 HLA-CQ95604 372 aa27.55■■■□□ 2
LSM4-202ENST00000593564 LSG1Q9H089 658 aaKnown RBP27.55■■■□□ 2
LSM4-202ENST00000593564 SUGCTQ9HAC7 445 aa27.55■■■□□ 2
LSM4-202ENST00000593564 ZNF215Q9UL58 517 aaPredicted RBP27.55■■■□□ 2
LSM4-202ENST00000593564 MTUS1Q9ULD2 1270 aa27.55■■■□□ 2
LSM4-202ENST00000593564 PLEKHA8P1O95397 391 aa27.54■■■□□ 2
LSM4-202ENST00000593564 NFXL1Q6ZNB6 911 aa27.54■■■□□ 2
LSM4-202ENST00000593564 NLRX1Q86UT6 975 aa27.54■■■□□ 2
LSM4-202ENST00000593564 TRIM50Q86XT4 487 aa27.54■■■□□ 2
LSM4-202ENST00000593564 SEPT8Q92599 483 aa27.54■■■□□ 2
LSM4-202ENST00000593564 SETD4Q9NVD3 440 aa27.54■■■□□ 2
LSM4-202ENST00000593564 CCDC69A6NI79 296 aa27.53■■■□□ 2
LSM4-202ENST00000593564 CALM1P0DP23 149 aa27.53■■■□□ 2
LSM4-202ENST00000593564 CALM2P0DP24 149 aa27.53■■■□□ 2
LSM4-202ENST00000593564 CALM3P0DP25 149 aa27.53■■■□□ 2
LSM4-202ENST00000593564 LIFRP42702 1097 aa27.53■■■□□ 2
LSM4-202ENST00000593564 MYOCDQ8IZQ8 938 aa27.53■■■□□ 2
LSM4-202ENST00000593564 GIMAP8Q8ND71 665 aaPredicted RBP27.53■■■□□ 2
LSM4-202ENST00000593564 TELO2Q9Y4R8 837 aa27.53■■■□□ 2
LSM4-202ENST00000593564 TCF20Q9UGU0 1960 aaKnown RBP27.53■■■□□ 2
LSM4-202ENST00000593564 ADAM17P78536 824 aa27.52■■■□□ 2
LSM4-202ENST00000593564 HTRA4P83105 476 aaPredicted RBP27.52■■■□□ 2
LSM4-202ENST00000593564 GPRASP2Q96D09 838 aa27.52■■■□□ 2
LSM4-202ENST00000593564 PSTPIP2Q9H939 334 aa27.52■■■□□ 2
LSM4-202ENST00000593564 MICAL3Q7RTP6 2002 aa27.51■■■□□ 2
LSM4-202ENST00000593564 SLC27A2O14975 620 aa27.51■■□□□ 1.99
LSM4-202ENST00000593564 CTSHP09668 335 aa27.51■■□□□ 1.99
LSM4-202ENST00000593564 SP4Q02446 784 aa27.51■■□□□ 1.99
LSM4-202ENST00000593564 COL9A3Q14050 684 aaPredicted RBP27.51■■□□□ 1.99
LSM4-202ENST00000593564 UTP14CQ5TAP6 766 aaKnown RBP27.51■■□□□ 1.99
LSM4-202ENST00000593564 SP7Q8TDD2 431 aaPredicted RBP27.51■■□□□ 1.99
LSM4-202ENST00000593564 LMBR1Q8WVP7 490 aa27.51■■□□□ 1.99
LSM4-202ENST00000593564 CDHR1Q96JP9 859 aa27.51■■□□□ 1.99
LSM4-202ENST00000593564 CMTR1Q8N1G2 835 aaKnown RBP27.5■■□□□ 1.99
LSM4-202ENST00000593564 ESYT1Q9BSJ8 1104 aa27.5■■□□□ 1.99
LSM4-202ENST00000593564 DOCK5Q9H7D0 1870 aa27.49■■□□□ 1.99
LSM4-202ENST00000593564 NRCAMQ92823 1304 aa27.49■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms