RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 TMEM67Q5HYA8 995 aa12.07□□□□□ -0.48
VPS4B-207ENST00000591519 MYSM1Q5VVJ2 828 aa12.07□□□□□ -0.48
VPS4B-207ENST00000591519 TYW1BQ6NUM6 668 aa12.07□□□□□ -0.48
VPS4B-207ENST00000591519 DHX37Q8IY37 1157 aaKnown RBP12.07□□□□□ -0.48
VPS4B-207ENST00000591519 CCDC155Q8N6L0 562 aa12.07□□□□□ -0.48
VPS4B-207ENST00000591519 PPP1R13LQ8WUF5 828 aa12.07□□□□□ -0.48
VPS4B-207ENST00000591519 KATNAL1Q9BW62 490 aa12.07□□□□□ -0.48
VPS4B-207ENST00000591519 GTF2IRD1Q9UHL9 959 aa12.07□□□□□ -0.48
VPS4B-207ENST00000591519 NOD1Q9Y239 953 aa12.07□□□□□ -0.48
VPS4B-207ENST00000591519 MRVI1Q9Y6F6 885 aa12.07□□□□□ -0.48
VPS4B-207ENST00000591519 TET1Q8NFU7 2136 aa12.07□□□□□ -0.48
VPS4B-207ENST00000591519 MYH7BA7E2Y1 1941 aa12.06□□□□□ -0.48
VPS4B-207ENST00000591519 PNMA6FA0A0J9YX94 578 aa12.06□□□□□ -0.48
VPS4B-207ENST00000591519 DPYSL4O14531 572 aa12.06□□□□□ -0.48
VPS4B-207ENST00000591519 IFIT3O14879 490 aaKnown RBP12.06□□□□□ -0.48
VPS4B-207ENST00000591519 SGSM2O43147 1006 aa12.06□□□□□ -0.48
VPS4B-207ENST00000591519 CXCL10P02778 98 aa12.06□□□□□ -0.48
VPS4B-207ENST00000591519 SELPP16109 830 aa12.06□□□□□ -0.48
VPS4B-207ENST00000591519 SMARCA1P28370 1054 aa12.06□□□□□ -0.48
VPS4B-207ENST00000591519 PGM5Q15124 567 aa12.06□□□□□ -0.48
VPS4B-207ENST00000591519 CELF3Q5SZQ8 465 aaKnown RBP12.06□□□□□ -0.48
VPS4B-207ENST00000591519 PPP2R2DQ66LE6 453 aa12.06□□□□□ -0.48
VPS4B-207ENST00000591519 CHST3Q7LGC8 479 aa12.06□□□□□ -0.48
VPS4B-207ENST00000591519 NCOA7Q8NI08 942 aa12.06□□□□□ -0.48
VPS4B-207ENST00000591519 IGDCC4Q8TDY8 1250 aa12.06□□□□□ -0.48
VPS4B-207ENST00000591519 DHX38Q92620 1227 aaKnown RBP12.06□□□□□ -0.48
VPS4B-207ENST00000591519 MAP4K1Q92918 833 aa12.06□□□□□ -0.48
VPS4B-207ENST00000591519 CCDC136Q96JN2 1154 aa12.06□□□□□ -0.48
VPS4B-207ENST00000591519 MAP3K14Q99558 947 aa12.06□□□□□ -0.48
VPS4B-207ENST00000591519 MTA3Q9BTC8 594 aa12.06□□□□□ -0.48
VPS4B-207ENST00000591519 FTOQ9C0B1 505 aaKnown RBP eCLIP12.06□□□□□ -0.48
VPS4B-207ENST00000591519 SENP2Q9HC62 589 aa12.06□□□□□ -0.48
VPS4B-207ENST00000591519 PRDM6Q9NQX0 595 aa12.06□□□□□ -0.48
VPS4B-207ENST00000591519 HDAC6Q9UBN7 1215 aa12.06□□□□□ -0.48
VPS4B-207ENST00000591519 TTC28Q96AY4 2481 aa12.06□□□□□ -0.48
VPS4B-207ENST00000591519 SPTBN5Q9NRC6 3674 aaKnown RBP12.06□□□□□ -0.48
VPS4B-207ENST00000591519 BAZ2BQ9UIF8 2168 aaKnown RBP12.05□□□□□ -0.48
VPS4B-207ENST00000591519 CHD7Q9P2D1 2997 aa12.05□□□□□ -0.48
VPS4B-207ENST00000591519 ERICH2A1L162 156 aa12.05□□□□□ -0.48
VPS4B-207ENST00000591519 KIF28PB7ZC32 967 aa12.05□□□□□ -0.48
VPS4B-207ENST00000591519 E7EWF7 191 aa12.05□□□□□ -0.48
VPS4B-207ENST00000591519 GCOM1H8Y6P7 765 aaPredicted RBP12.05□□□□□ -0.48
VPS4B-207ENST00000591519 POLR2MP0CAP2 368 aa12.05□□□□□ -0.48
VPS4B-207ENST00000591519 CKBP12277 381 aa12.05□□□□□ -0.48
VPS4B-207ENST00000591519 IGFBP4P22692 258 aa12.05□□□□□ -0.48
VPS4B-207ENST00000591519 SP2Q02086 613 aa12.05□□□□□ -0.48
VPS4B-207ENST00000591519 PTK7Q13308 1070 aa12.05□□□□□ -0.48
VPS4B-207ENST00000591519 WTAPQ15007 396 aa12.05□□□□□ -0.48
VPS4B-207ENST00000591519 HSDL1Q3SXM5 330 aa12.05□□□□□ -0.48
VPS4B-207ENST00000591519 LRRC8DQ7L1W4 858 aa12.05□□□□□ -0.48
VPS4B-207ENST00000591519 HERC6Q8IVU3 1022 aa12.05□□□□□ -0.48
VPS4B-207ENST00000591519 C7orf31Q8N865 590 aa12.05□□□□□ -0.48
VPS4B-207ENST00000591519 PPM1EQ8WY54 764 aa12.05□□□□□ -0.48
VPS4B-207ENST00000591519 ASB2Q96Q27 587 aa12.05□□□□□ -0.48
VPS4B-207ENST00000591519 PIGSQ96S52 555 aa12.05□□□□□ -0.48
VPS4B-207ENST00000591519 TAF6LQ9Y6J9 622 aa12.05□□□□□ -0.48
VPS4B-207ENST00000591519 TANC1Q9C0D5 1861 aa12.04□□□□□ -0.48
VPS4B-207ENST00000591519 STAM2O75886 525 aa12.04□□□□□ -0.48
VPS4B-207ENST00000591519 CA3P07451 260 aa12.04□□□□□ -0.48
VPS4B-207ENST00000591519 MYCLP12524 364 aaPredicted RBP12.04□□□□□ -0.48
VPS4B-207ENST00000591519 HOXA13P31271 388 aaPredicted RBP12.04□□□□□ -0.48
VPS4B-207ENST00000591519 ICAM3P32942 547 aa12.04□□□□□ -0.48
VPS4B-207ENST00000591519 CHMP4BP1P59074 171 aa12.04□□□□□ -0.48
VPS4B-207ENST00000591519 MRPS5P82675 430 aaKnown RBP12.04□□□□□ -0.48
VPS4B-207ENST00000591519 SART3Q15020 963 aaKnown RBP12.04□□□□□ -0.48
VPS4B-207ENST00000591519 KIAA0753Q2KHM9 967 aa12.04□□□□□ -0.48
VPS4B-207ENST00000591519 TRIM71Q2Q1W2 868 aaKnown RBP12.04□□□□□ -0.48
VPS4B-207ENST00000591519 TRAF7Q6Q0C0 670 aa12.04□□□□□ -0.48
VPS4B-207ENST00000591519 CENPQQ7L2Z9 268 aaPredicted RBP12.04□□□□□ -0.48
VPS4B-207ENST00000591519 RALYLQ86SE5 291 aaKnown RBP12.04□□□□□ -0.48
VPS4B-207ENST00000591519 C16orf70Q9BSU1 422 aa12.04□□□□□ -0.48
VPS4B-207ENST00000591519 ALG1Q9BT22 464 aa12.04□□□□□ -0.48
VPS4B-207ENST00000591519 THEGQ9P2T0 379 aa12.04□□□□□ -0.48
VPS4B-207ENST00000591519 RABGEF1Q9UJ41 708 aa12.04□□□□□ -0.48
VPS4B-207ENST00000591519 FRMPD4Q14CM0 1322 aa12.04□□□□□ -0.48
VPS4B-207ENST00000591519 ABHD14A-ACY1A0A1B0GW23 586 aa12.03□□□□□ -0.48
VPS4B-207ENST00000591519 NBNO60934 754 aa12.03□□□□□ -0.48
VPS4B-207ENST00000591519 GGPS1O95749 300 aa12.03□□□□□ -0.48
VPS4B-207ENST00000591519 CCND2P30279 289 aa12.03□□□□□ -0.48
VPS4B-207ENST00000591519 HOXC8P31273 242 aa12.03□□□□□ -0.48
VPS4B-207ENST00000591519 ANTXR2P58335 489 aa12.03□□□□□ -0.48
VPS4B-207ENST00000591519 TAP1Q03518 808 aa12.03□□□□□ -0.48
VPS4B-207ENST00000591519 CCDC85BQ15834 202 aaPredicted RBP12.03□□□□□ -0.48
VPS4B-207ENST00000591519 CNKSR3Q6P9H4 555 aa12.03□□□□□ -0.48
VPS4B-207ENST00000591519 CATIPQ7Z7H3 387 aa12.03□□□□□ -0.48
VPS4B-207ENST00000591519 HOMER1Q86YM7 354 aa12.03□□□□□ -0.48
VPS4B-207ENST00000591519 MB21D2Q8IYB1 491 aaPredicted RBP12.03□□□□□ -0.48
VPS4B-207ENST00000591519 TMTC2Q8N394 836 aa12.03□□□□□ -0.48
VPS4B-207ENST00000591519 IL31RAQ8NI17 732 aa12.03□□□□□ -0.48
VPS4B-207ENST00000591519 SPATA33Q96N06 139 aa12.03□□□□□ -0.48
VPS4B-207ENST00000591519 MTCH2Q9Y6C9 303 aa12.03□□□□□ -0.48
VPS4B-207ENST00000591519 SPATA31C2B4DYI2 1134 aa12.02□□□□□ -0.49
VPS4B-207ENST00000591519 PIK3CDO00329 1044 aa12.02□□□□□ -0.49
VPS4B-207ENST00000591519 EFCAB14O75071 495 aa12.02□□□□□ -0.49
VPS4B-207ENST00000591519 ZNF286BP0CG31 522 aa12.02□□□□□ -0.49
VPS4B-207ENST00000591519 UBA1P22314 1058 aaKnown RBP12.02□□□□□ -0.49
VPS4B-207ENST00000591519 WDR5P61964 334 aaKnown RBP12.02□□□□□ -0.49
VPS4B-207ENST00000591519 MRPS9P82933 396 aaKnown RBP12.02□□□□□ -0.49
VPS4B-207ENST00000591519 HIC1Q14526 733 aa12.02□□□□□ -0.49
VPS4B-207ENST00000591519 XRRA1Q6P2D8 792 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms