RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 MRPS9P82933 396 aaKnown RBP13.73□□□□□ -0.21
LIG3-209ENST00000586435 PTH1RQ03431 593 aa13.73□□□□□ -0.21
LIG3-209ENST00000586435 NEDD9Q14511 834 aa13.73□□□□□ -0.21
LIG3-209ENST00000586435 PLEKHG4Q58EX7 1191 aa13.73□□□□□ -0.21
LIG3-209ENST00000586435 METTL7BQ6UX53 244 aa13.73□□□□□ -0.21
LIG3-209ENST00000586435 FCHSD1Q86WN1 690 aa13.73□□□□□ -0.21
LIG3-209ENST00000586435 GPKOWQ92917 476 aaPredicted RBP eCLIP13.73□□□□□ -0.21
LIG3-209ENST00000586435 MAP3K14Q99558 947 aa13.73□□□□□ -0.21
LIG3-209ENST00000586435 C1QTNF1Q9BXJ1 281 aa13.73□□□□□ -0.21
LIG3-209ENST00000586435 USP26Q9BXU7 913 aa13.73□□□□□ -0.21
LIG3-209ENST00000586435 SUGCTQ9HAC7 445 aa13.73□□□□□ -0.21
LIG3-209ENST00000586435 SENP2Q9HC62 589 aa13.73□□□□□ -0.21
LIG3-209ENST00000586435 INSL6Q9Y581 213 aa13.73□□□□□ -0.21
LIG3-209ENST00000586435 E7EWF7 191 aa13.72□□□□□ -0.21
LIG3-209ENST00000586435 NOP56O00567 594 aaKnown RBP13.72□□□□□ -0.21
LIG3-209ENST00000586435 FIBPO43427 364 aa13.72□□□□□ -0.21
LIG3-209ENST00000586435 AMHP03971 560 aa13.72□□□□□ -0.21
LIG3-209ENST00000586435 SMIM10L2AP0DMW4 78 aa13.72□□□□□ -0.21
LIG3-209ENST00000586435 SMIM10L2BP0DMW5 78 aa13.72□□□□□ -0.21
LIG3-209ENST00000586435 SMARCA1P28370 1054 aa13.72□□□□□ -0.21
LIG3-209ENST00000586435 THPOP40225 353 aa13.72□□□□□ -0.21
LIG3-209ENST00000586435 HTRA4P83105 476 aaPredicted RBP13.72□□□□□ -0.21
LIG3-209ENST00000586435 CATIPQ7Z7H3 387 aa13.72□□□□□ -0.21
LIG3-209ENST00000586435 DBF4BQ8NFT6 615 aa13.72□□□□□ -0.21
LIG3-209ENST00000586435 SP7Q8TDD2 431 aaPredicted RBP13.72□□□□□ -0.21
LIG3-209ENST00000586435 ATP6V0A1Q93050 837 aa13.72□□□□□ -0.21
LIG3-209ENST00000586435 MTA3Q9BTC8 594 aa13.72□□□□□ -0.21
LIG3-209ENST00000586435 SPZ1Q9BXG8 430 aa13.72□□□□□ -0.21
LIG3-209ENST00000586435 SPATA31C2B4DYI2 1134 aa13.71□□□□□ -0.21
LIG3-209ENST00000586435 PIK3CDO00329 1044 aa13.71□□□□□ -0.21
LIG3-209ENST00000586435 SGSM2O43147 1006 aa13.71□□□□□ -0.21
LIG3-209ENST00000586435 SORBS3O60504 671 aa13.71□□□□□ -0.21
LIG3-209ENST00000586435 DDAH1O94760 285 aa13.71□□□□□ -0.21
LIG3-209ENST00000586435 ANTXR2P58335 489 aa13.71□□□□□ -0.21
LIG3-209ENST00000586435 SEMA3FQ13275 785 aa13.71□□□□□ -0.21
LIG3-209ENST00000586435 XRRA1Q6P2D8 792 aa13.71□□□□□ -0.21
LIG3-209ENST00000586435 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.71□□□□□ -0.21
LIG3-209ENST00000586435 MB21D2Q8IYB1 491 aaPredicted RBP13.71□□□□□ -0.21
LIG3-209ENST00000586435 IGDCC4Q8TDY8 1250 aa13.71□□□□□ -0.21
LIG3-209ENST00000586435 ZFP91Q96JP5 570 aaPredicted RBP13.71□□□□□ -0.21
LIG3-209ENST00000586435 GPR20Q99678 358 aa13.71□□□□□ -0.21
LIG3-209ENST00000586435 SENP7Q9BQF6 1050 aa13.71□□□□□ -0.21
LIG3-209ENST00000586435 RNPEPQ9H4A4 650 aa13.71□□□□□ -0.21
LIG3-209ENST00000586435 TAF6LQ9Y6J9 622 aa13.71□□□□□ -0.21
LIG3-209ENST00000586435 TREHO43280 583 aa13.7□□□□□ -0.22
LIG3-209ENST00000586435 GNAT1P11488 350 aa13.7□□□□□ -0.22
LIG3-209ENST00000586435 ADAM17P78536 824 aa13.7□□□□□ -0.22
LIG3-209ENST00000586435 PCNX4Q63HM2 1172 aa13.7□□□□□ -0.22
LIG3-209ENST00000586435 MYOCDQ8IZQ8 938 aa13.7□□□□□ -0.22
LIG3-209ENST00000586435 SEPT8Q92599 483 aa13.7□□□□□ -0.22
LIG3-209ENST00000586435 MAP4K1Q92918 833 aa13.7□□□□□ -0.22
LIG3-209ENST00000586435 SAMD11Q96NU1 681 aa13.7□□□□□ -0.22
LIG3-209ENST00000586435 BCAS3Q9H6U6 928 aa13.7□□□□□ -0.22
LIG3-209ENST00000586435 ZNF215Q9UL58 517 aaPredicted RBP13.7□□□□□ -0.22
LIG3-209ENST00000586435 MTUS1Q9ULD2 1270 aa13.7□□□□□ -0.22
LIG3-209ENST00000586435 ATG2AQ2TAZ0 1938 aa13.7□□□□□ -0.22
LIG3-209ENST00000586435 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.69□□□□□ -0.22
LIG3-209ENST00000586435 KIF5BP33176 963 aa13.69□□□□□ -0.22
LIG3-209ENST00000586435 FAM26DQ5JW98 314 aa13.69□□□□□ -0.22
LIG3-209ENST00000586435 FAM117BQ6P1L5 589 aa13.69□□□□□ -0.22
LIG3-209ENST00000586435 CYFIP1Q7L576 1253 aa13.69□□□□□ -0.22
LIG3-209ENST00000586435 ZNF654Q8IZM8 581 aa13.69□□□□□ -0.22
LIG3-209ENST00000586435 GIMAP8Q8ND71 665 aaPredicted RBP13.69□□□□□ -0.22
LIG3-209ENST00000586435 FBXO22Q8NEZ5 403 aa13.69□□□□□ -0.22
LIG3-209ENST00000586435 CTCFLQ8NI51 663 aaPredicted RBP13.69□□□□□ -0.22
LIG3-209ENST00000586435 SMARCC2Q8TAQ2 1214 aa13.69□□□□□ -0.22
LIG3-209ENST00000586435 APBB2Q92870 758 aa13.69□□□□□ -0.22
LIG3-209ENST00000586435 CUL5Q93034 780 aa13.69□□□□□ -0.22
LIG3-209ENST00000586435 TOP1MTQ969P6 601 aa13.69□□□□□ -0.22
LIG3-209ENST00000586435 RRP36Q96EU6 259 aaKnown RBP13.69□□□□□ -0.22
LIG3-209ENST00000586435 YTHDC1Q96MU7 727 aaKnown RBP13.69□□□□□ -0.22
LIG3-209ENST00000586435 LZTS2Q9BRK4 669 aa13.69□□□□□ -0.22
LIG3-209ENST00000586435 UBE2ZQ9H832 354 aaPredicted RBP13.69□□□□□ -0.22
LIG3-209ENST00000586435 LY9Q9HBG7 655 aa13.69□□□□□ -0.22
LIG3-209ENST00000586435 MEIS2O14770 477 aa13.68□□□□□ -0.22
LIG3-209ENST00000586435 RPAINQ86UA6 219 aa13.68□□□□□ -0.22
LIG3-209ENST00000586435 NLRX1Q86UT6 975 aa13.68□□□□□ -0.22
LIG3-209ENST00000586435 TRIM50Q86XT4 487 aa13.68□□□□□ -0.22
LIG3-209ENST00000586435 LMBR1Q8WVP7 490 aa13.68□□□□□ -0.22
LIG3-209ENST00000586435 C17orf80Q9BSJ5 609 aa13.68□□□□□ -0.22
LIG3-209ENST00000586435 SEC63Q9UGP8 760 aaKnown RBP13.68□□□□□ -0.22
LIG3-209ENST00000586435 TTC3P53804 2025 aa13.68□□□□□ -0.22
LIG3-209ENST00000586435 NRCAMQ92823 1304 aa13.67□□□□□ -0.22
LIG3-209ENST00000586435 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.67□□□□□ -0.22
LIG3-209ENST00000586435 CTSHP09668 335 aa13.67□□□□□ -0.22
LIG3-209ENST00000586435 GNAQP50148 359 aa13.67□□□□□ -0.22
LIG3-209ENST00000586435 PTPROQ16827 1216 aa13.67□□□□□ -0.22
LIG3-209ENST00000586435 LEXMQ3ZCV2 418 aa13.67□□□□□ -0.22
LIG3-209ENST00000586435 USP17L6PQ6QN14 398 aa13.67□□□□□ -0.22
LIG3-209ENST00000586435 TMTC2Q8N394 836 aa13.67□□□□□ -0.22
LIG3-209ENST00000586435 GPRASP2Q96D09 838 aa13.67□□□□□ -0.22
LIG3-209ENST00000586435 MRPL38Q96DV4 380 aaKnown RBP13.67□□□□□ -0.22
LIG3-209ENST00000586435 CDHR1Q96JP9 859 aa13.67□□□□□ -0.22
LIG3-209ENST00000586435 SETD4Q9NVD3 440 aa13.67□□□□□ -0.22
LIG3-209ENST00000586435 RTEL1Q9NZ71 1219 aa13.67□□□□□ -0.22
LIG3-209ENST00000586435 RAPGEFL1Q9UHV5 662 aa13.67□□□□□ -0.22
LIG3-209ENST00000586435 RBM8AQ9Y5S9 174 aaKnown RBP13.67□□□□□ -0.22
LIG3-209ENST00000586435 MYO7AQ13402 2215 aa13.66□□□□□ -0.22
LIG3-209ENST00000586435 H3BNC9 293 aa13.66□□□□□ -0.22
LIG3-209ENST00000586435 PLA2G5P39877 138 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms