RNA–Protein interactions for RNA: ENST00000583649.1

CASC3-208, Transcript of CASC3, exon junction complex subunit, humanhuman

TSL 3

Gene CASC3, Length 577 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC3-208ENST00000583649 GTF2F1P35269 517 aaKnown RBP eCLIP13.01□□□□□ -0.33
CASC3-208ENST00000583649 NRIP1P48552 1158 aa13.01□□□□□ -0.33
CASC3-208ENST00000583649 MTMR3Q13615 1198 aa13.01□□□□□ -0.33
CASC3-208ENST00000583649 GPATCH4Q5T3I0 446 aaKnown RBP13.01□□□□□ -0.33
CASC3-208ENST00000583649 MICAL1Q8TDZ2 1067 aa13.01□□□□□ -0.33
CASC3-208ENST00000583649 WNT8BQ93098 351 aa13.01□□□□□ -0.33
CASC3-208ENST00000583649 NEK1Q96PY6 1258 aa13.01□□□□□ -0.33
CASC3-208ENST00000583649 CDCA3Q99618 268 aaPredicted RBP13.01□□□□□ -0.33
CASC3-208ENST00000583649 MFSD1Q9H3U5 465 aa13.01□□□□□ -0.33
CASC3-208ENST00000583649 TUT1Q9H6E5 874 aaKnown RBP13.01□□□□□ -0.33
CASC3-208ENST00000583649 TLE6Q9H808 572 aa13.01□□□□□ -0.33
CASC3-208ENST00000583649 MLXIPQ9HAP2 919 aa13.01□□□□□ -0.33
CASC3-208ENST00000583649 ALG13Q9NP73 1137 aaKnown RBP13.01□□□□□ -0.33
CASC3-208ENST00000583649 ZFHX2Q9C0A1 2572 aaPredicted RBP13.01□□□□□ -0.33
CASC3-208ENST00000583649 CCDC171Q6TFL3 1326 aa13□□□□□ -0.33
CASC3-208ENST00000583649 NOP56O00567 594 aaKnown RBP13□□□□□ -0.33
CASC3-208ENST00000583649 NMT2O60551 498 aa13□□□□□ -0.33
CASC3-208ENST00000583649 TGFB3P10600 412 aa13□□□□□ -0.33
CASC3-208ENST00000583649 HSPD1P10809 573 aaKnown RBP13□□□□□ -0.33
CASC3-208ENST00000583649 DGLUCYQ7Z3D6 616 aa13□□□□□ -0.33
CASC3-208ENST00000583649 RNF216Q9NWF9 866 aaPredicted RBP13□□□□□ -0.33
CASC3-208ENST00000583649 CLEC1BQ9P126 229 aa13□□□□□ -0.33
CASC3-208ENST00000583649 ZNF215Q9UL58 517 aaPredicted RBP13□□□□□ -0.33
CASC3-208ENST00000583649 MRPL11Q9Y3B7 192 aaKnown RBP13□□□□□ -0.33
CASC3-208ENST00000583649 LCTP09848 1927 aa13□□□□□ -0.33
CASC3-208ENST00000583649 M0R2C6 588 aa12.99□□□□□ -0.33
CASC3-208ENST00000583649 RPLP2P05387 115 aaKnown RBP12.99□□□□□ -0.33
CASC3-208ENST00000583649 STAG3L1P0CL83 205 aa12.99□□□□□ -0.33
CASC3-208ENST00000583649 SMIM10L2AP0DMW4 78 aa12.99□□□□□ -0.33
CASC3-208ENST00000583649 SMIM10L2BP0DMW5 78 aa12.99□□□□□ -0.33
CASC3-208ENST00000583649 PDHBP11177 359 aa12.99□□□□□ -0.33
CASC3-208ENST00000583649 RLBP1P12271 317 aa12.99□□□□□ -0.33
CASC3-208ENST00000583649 HOXD8P13378 290 aaPredicted RBP12.99□□□□□ -0.33
CASC3-208ENST00000583649 NOVP48745 357 aa12.99□□□□□ -0.33
CASC3-208ENST00000583649 CELF3Q5SZQ8 465 aaKnown RBP12.99□□□□□ -0.33
CASC3-208ENST00000583649 MYSM1Q5VVJ2 828 aa12.99□□□□□ -0.33
CASC3-208ENST00000583649 PDE12Q6L8Q7 609 aaKnown RBP12.99□□□□□ -0.33
CASC3-208ENST00000583649 RBM23Q86U06 439 aaKnown RBP12.99□□□□□ -0.33
CASC3-208ENST00000583649 CMTR2Q8IYT2 770 aaKnown RBP12.99□□□□□ -0.33
CASC3-208ENST00000583649 SYTL5Q8TDW5 730 aaPredicted RBP12.99□□□□□ -0.33
CASC3-208ENST00000583649 TTC14Q96N46 770 aa12.99□□□□□ -0.33
CASC3-208ENST00000583649 TAAR1Q96RJ0 339 aa12.99□□□□□ -0.33
CASC3-208ENST00000583649 TMEM47Q9BQJ4 181 aa12.99□□□□□ -0.33
CASC3-208ENST00000583649 USP26Q9BXU7 913 aa12.99□□□□□ -0.33
CASC3-208ENST00000583649 SEMA4AQ9H3S1 761 aa12.99□□□□□ -0.33
CASC3-208ENST00000583649 AAASQ9NRG9 546 aa12.99□□□□□ -0.33
CASC3-208ENST00000583649 NLRC5Q86WI3 1866 aa12.99□□□□□ -0.33
CASC3-208ENST00000583649 KMT2EQ8IZD2 1858 aa12.99□□□□□ -0.33
CASC3-208ENST00000583649 PTPRZ1P23471 2315 aaPredicted RBP12.99□□□□□ -0.33
CASC3-208ENST00000583649 TREHO43280 583 aa12.98□□□□□ -0.33
CASC3-208ENST00000583649 ORC4O43929 436 aa12.98□□□□□ -0.33
CASC3-208ENST00000583649 NR3C2P08235 984 aa12.98□□□□□ -0.33
CASC3-208ENST00000583649 EIF2AK2P19525 551 aaKnown RBP12.98□□□□□ -0.33
CASC3-208ENST00000583649 UBE3AQ05086 875 aa12.98□□□□□ -0.33
CASC3-208ENST00000583649 ZNF543Q08ER8 600 aa12.98□□□□□ -0.33
CASC3-208ENST00000583649 KCNG4Q8TDN1 519 aa12.98□□□□□ -0.33
CASC3-208ENST00000583649 POF1BQ8WVV4 589 aa12.98□□□□□ -0.33
CASC3-208ENST00000583649 TCP11L1Q9NUJ3 509 aa12.98□□□□□ -0.33
CASC3-208ENST00000583649 MAP3K20Q9NYL2 800 aaKnown RBP12.98□□□□□ -0.33
CASC3-208ENST00000583649 BARX2Q9UMQ3 279 aaPredicted RBP12.98□□□□□ -0.33
CASC3-208ENST00000583649 DDX19BQ9UMR2 479 aa12.98□□□□□ -0.33
CASC3-208ENST00000583649 SORCS3Q9UPU3 1222 aa12.98□□□□□ -0.33
CASC3-208ENST00000583649 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.98□□□□□ -0.33
CASC3-208ENST00000583649 PCDHB12Q9Y5F1 795 aa12.98□□□□□ -0.33
CASC3-208ENST00000583649 C5orf42Q9H799 3197 aa12.97□□□□□ -0.33
CASC3-208ENST00000583649 DGKIO75912 1065 aa12.97□□□□□ -0.33
CASC3-208ENST00000583649 GGPS1O95749 300 aa12.97□□□□□ -0.33
CASC3-208ENST00000583649 CLCN5P51795 746 aa12.97□□□□□ -0.33
CASC3-208ENST00000583649 HSDL1Q3SXM5 330 aa12.97□□□□□ -0.33
CASC3-208ENST00000583649 RRP12Q5JTH9 1297 aaKnown RBP12.97□□□□□ -0.33
CASC3-208ENST00000583649 FAM26DQ5JW98 314 aa12.97□□□□□ -0.33
CASC3-208ENST00000583649 ASTLQ6HA08 431 aaPredicted RBP12.97□□□□□ -0.33
CASC3-208ENST00000583649 TAF2Q6P1X5 1199 aa12.97□□□□□ -0.33
CASC3-208ENST00000583649 RASGRP2Q7LDG7 609 aa12.97□□□□□ -0.33
CASC3-208ENST00000583649 FRMD5Q7Z6J6 570 aa12.97□□□□□ -0.33
CASC3-208ENST00000583649 KREMEN2Q8NCW0 462 aa12.97□□□□□ -0.33
CASC3-208ENST00000583649 SPPL3Q8TCT6 385 aa12.97□□□□□ -0.33
CASC3-208ENST00000583649 ZNF689Q96CS4 500 aaPredicted RBP12.97□□□□□ -0.33
CASC3-208ENST00000583649 C16orf70Q9BSU1 422 aa12.97□□□□□ -0.33
CASC3-208ENST00000583649 FTHL17Q9BXU8 183 aa12.97□□□□□ -0.33
CASC3-208ENST00000583649 RNPEPQ9H4A4 650 aa12.97□□□□□ -0.33
CASC3-208ENST00000583649 PXMP2Q9NR77 195 aa12.97□□□□□ -0.33
CASC3-208ENST00000583649 ENPP3O14638 875 aa12.96□□□□□ -0.33
CASC3-208ENST00000583649 DHX16O60231 1041 aaKnown RBP12.96□□□□□ -0.33
CASC3-208ENST00000583649 MYCLP12524 364 aaPredicted RBP12.96□□□□□ -0.33
CASC3-208ENST00000583649 HOXB8P17481 243 aaPredicted RBP12.96□□□□□ -0.33
CASC3-208ENST00000583649 CTDSPL2Q05D32 466 aa12.96□□□□□ -0.33
CASC3-208ENST00000583649 PUM1Q14671 1186 aaKnown RBP eCLIP12.96□□□□□ -0.33
CASC3-208ENST00000583649 CDC37Q16543 378 aaPredicted RBP12.96□□□□□ -0.33
CASC3-208ENST00000583649 GNPTABQ3T906 1256 aa12.96□□□□□ -0.33
CASC3-208ENST00000583649 SPOUT1Q5T280 376 aaKnown RBP12.96□□□□□ -0.33
CASC3-208ENST00000583649 CES5AQ6NT32 575 aa12.96□□□□□ -0.33
CASC3-208ENST00000583649 FAM43BQ6ZT52 329 aaPredicted RBP12.96□□□□□ -0.33
CASC3-208ENST00000583649 KLHL23Q8NBE8 558 aa12.96□□□□□ -0.33
CASC3-208ENST00000583649 SUSD6Q92537 303 aa12.96□□□□□ -0.33
CASC3-208ENST00000583649 NECTIN4Q96NY8 510 aa12.96□□□□□ -0.33
CASC3-208ENST00000583649 TSHZ2Q9NRE2 1034 aa12.96□□□□□ -0.33
CASC3-208ENST00000583649 ANAPC4Q9UJX5 808 aa12.96□□□□□ -0.33
CASC3-208ENST00000583649 LRFN2Q9ULH4 789 aa12.96□□□□□ -0.33
CASC3-208ENST00000583649 TRIOO75962 3097 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms