RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 STAT5AP42229 794 aa5.59□□□□□ -1.51
SMCHD1-209ENST00000583441 NKX3-2P78367 333 aa5.59□□□□□ -1.51
SMCHD1-209ENST00000583441 FXNQ16595 210 aa5.59□□□□□ -1.51
SMCHD1-209ENST00000583441 INTS3Q68E01 1043 aaKnown RBP5.59□□□□□ -1.51
SMCHD1-209ENST00000583441 HNRNPLLQ8WVV9 542 aaKnown RBP5.59□□□□□ -1.51
SMCHD1-209ENST00000583441 MRFAP1L1Q96HT8 127 aa5.59□□□□□ -1.51
SMCHD1-209ENST00000583441 PRRX2Q99811 253 aa5.59□□□□□ -1.51
SMCHD1-209ENST00000583441 ZSWIM4Q9H7M6 989 aa5.59□□□□□ -1.51
SMCHD1-209ENST00000583441 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.59□□□□□ -1.51
SMCHD1-209ENST00000583441 CROTQ9UKG9 612 aa5.59□□□□□ -1.51
SMCHD1-209ENST00000583441 TNFRSF10CO14798 259 aa5.58□□□□□ -1.52
SMCHD1-209ENST00000583441 SHOXO15266 292 aa5.58□□□□□ -1.52
SMCHD1-209ENST00000583441 FUCA1P04066 466 aa5.58□□□□□ -1.52
SMCHD1-209ENST00000583441 NME1P15531 152 aaKnown RBP5.58□□□□□ -1.52
SMCHD1-209ENST00000583441 ZNF445P59923 1031 aa5.58□□□□□ -1.52
SMCHD1-209ENST00000583441 EEF1DP3Q658K8 133 aa5.58□□□□□ -1.52
SMCHD1-209ENST00000583441 ZNF627Q7L945 461 aa5.58□□□□□ -1.52
SMCHD1-209ENST00000583441 FAM126BQ8IXS8 530 aa5.58□□□□□ -1.52
SMCHD1-209ENST00000583441 FIBCD1Q8N539 461 aa5.58□□□□□ -1.52
SMCHD1-209ENST00000583441 FAM169BQ8N8A8 192 aa5.58□□□□□ -1.52
SMCHD1-209ENST00000583441 CACTINQ8WUQ7 758 aaKnown RBP5.58□□□□□ -1.52
SMCHD1-209ENST00000583441 TMA7Q9Y2S6 64 aaKnown RBP5.58□□□□□ -1.52
SMCHD1-209ENST00000583441 LOC105371045A0A1W2PR82 267 aa5.57□□□□□ -1.52
SMCHD1-209ENST00000583441 ACO1P21399 889 aaKnown RBP5.57□□□□□ -1.52
SMCHD1-209ENST00000583441 DDR2Q16832 855 aa5.57□□□□□ -1.52
SMCHD1-209ENST00000583441 FNDC7Q5VTL7 733 aa5.57□□□□□ -1.52
SMCHD1-209ENST00000583441 RCSD1Q6JBY9 416 aa5.57□□□□□ -1.52
SMCHD1-209ENST00000583441 ZCCHC14Q8WYQ9 949 aaKnown RBP5.57□□□□□ -1.52
SMCHD1-209ENST00000583441 DHRS1Q96LJ7 313 aa5.57□□□□□ -1.52
SMCHD1-209ENST00000583441 YIPF4Q9BSR8 244 aa5.57□□□□□ -1.52
SMCHD1-209ENST00000583441 TTPALQ9BTX7 342 aa5.57□□□□□ -1.52
SMCHD1-209ENST00000583441 PHAXQ9H814 394 aaKnown RBP5.57□□□□□ -1.52
SMCHD1-209ENST00000583441 SUCOQ9UBS9 1254 aaKnown RBP5.57□□□□□ -1.52
SMCHD1-209ENST00000583441 TMEFF2Q9UIK5 374 aaPredicted RBP5.57□□□□□ -1.52
SMCHD1-209ENST00000583441 FHOD1Q9Y613 1164 aa5.57□□□□□ -1.52
SMCHD1-209ENST00000583441 A0A1W2PQH9 124 aa5.56□□□□□ -1.52
SMCHD1-209ENST00000583441 SGSM2O43147 1006 aa5.56□□□□□ -1.52
SMCHD1-209ENST00000583441 RBM10P98175 930 aaKnown RBP5.56□□□□□ -1.52
SMCHD1-209ENST00000583441 BMS1Q14692 1282 aaKnown RBP5.56□□□□□ -1.52
SMCHD1-209ENST00000583441 PPP2R5EQ16537 467 aa5.56□□□□□ -1.52
SMCHD1-209ENST00000583441 EPHA10Q5JZY3 1008 aa5.56□□□□□ -1.52
SMCHD1-209ENST00000583441 LARP1BQ659C4 914 aaKnown RBP5.56□□□□□ -1.52
SMCHD1-209ENST00000583441 TRMT10BQ6PF06 316 aaKnown RBP5.56□□□□□ -1.52
SMCHD1-209ENST00000583441 RALYLQ86SE5 291 aaKnown RBP5.56□□□□□ -1.52
SMCHD1-209ENST00000583441 TAX1BP1Q86VP1 789 aa5.56□□□□□ -1.52
SMCHD1-209ENST00000583441 CPNE8Q86YQ8 564 aa5.56□□□□□ -1.52
SMCHD1-209ENST00000583441 IL17DQ8TAD2 202 aa5.56□□□□□ -1.52
SMCHD1-209ENST00000583441 CCDC113Q9H0I3 377 aa5.56□□□□□ -1.52
SMCHD1-209ENST00000583441 GP6Q9HCN6 339 aa5.56□□□□□ -1.52
SMCHD1-209ENST00000583441 ADAM29Q9UKF5 820 aa5.56□□□□□ -1.52
SMCHD1-209ENST00000583441 CDK11AQ9UQ88 783 aaPredicted RBP5.56□□□□□ -1.52
SMCHD1-209ENST00000583441 C9IYK1 514 aa5.55□□□□□ -1.52
SMCHD1-209ENST00000583441 NCAPHQ15003 741 aa5.55□□□□□ -1.52
SMCHD1-209ENST00000583441 CR1LQ2VPA4 569 aa5.55□□□□□ -1.52
SMCHD1-209ENST00000583441 ZDHHC15Q96MV8 337 aa5.55□□□□□ -1.52
SMCHD1-209ENST00000583441 DEPDC7Q96QD5 511 aa5.55□□□□□ -1.52
SMCHD1-209ENST00000583441 SRPK1Q96SB4 655 aaKnown RBP5.55□□□□□ -1.52
SMCHD1-209ENST00000583441 PTGFRNQ9P2B2 879 aa5.55□□□□□ -1.52
SMCHD1-209ENST00000583441 MSRB2Q9Y3D2 182 aa5.55□□□□□ -1.52
SMCHD1-209ENST00000583441 IFRD2Q12894 506 aaPredicted RBP5.54□□□□□ -1.52
SMCHD1-209ENST00000583441 RASGRF1Q13972 1273 aa5.54□□□□□ -1.52
SMCHD1-209ENST00000583441 RASA3Q14644 834 aa5.54□□□□□ -1.52
SMCHD1-209ENST00000583441 RUFY4Q6ZNE9 571 aa5.54□□□□□ -1.52
SMCHD1-209ENST00000583441 MILR1Q7Z6M3 343 aa5.54□□□□□ -1.52
SMCHD1-209ENST00000583441 FUKQ8N0W3 1084 aa5.54□□□□□ -1.52
SMCHD1-209ENST00000583441 SEC14L1Q92503 715 aa5.54□□□□□ -1.52
SMCHD1-209ENST00000583441 SMARCC1Q92922 1105 aaPredicted RBP5.54□□□□□ -1.52
SMCHD1-209ENST00000583441 CLIP3Q96DZ5 547 aa5.54□□□□□ -1.52
SMCHD1-209ENST00000583441 WRNIP1Q96S55 665 aa5.54□□□□□ -1.52
SMCHD1-209ENST00000583441 NOL6Q9H6R4 1146 aaKnown RBP5.54□□□□□ -1.52
SMCHD1-209ENST00000583441 SNTG2Q9NY99 539 aa5.54□□□□□ -1.52
SMCHD1-209ENST00000583441 REXO2Q9Y3B8 237 aaKnown RBP5.54□□□□□ -1.52
SMCHD1-209ENST00000583441 MASP2O00187 686 aa5.53□□□□□ -1.52
SMCHD1-209ENST00000583441 NPHS1O60500 1241 aa5.53□□□□□ -1.52
SMCHD1-209ENST00000583441 NAT2P11245 290 aa5.53□□□□□ -1.52
SMCHD1-209ENST00000583441 ANKRD39Q53RE8 183 aa5.53□□□□□ -1.52
SMCHD1-209ENST00000583441 DCAF15Q66K64 600 aa5.53□□□□□ -1.52
SMCHD1-209ENST00000583441 UNC5AQ6ZN44 842 aa5.53□□□□□ -1.52
SMCHD1-209ENST00000583441 FAM178BQ8IXR5 827 aa5.53□□□□□ -1.52
SMCHD1-209ENST00000583441 ZNF669Q96BR6 464 aaPredicted RBP5.53□□□□□ -1.52
SMCHD1-209ENST00000583441 FAM89AQ96GI7 184 aa5.53□□□□□ -1.52
SMCHD1-209ENST00000583441 SLC9A7Q96T83 725 aa5.53□□□□□ -1.52
SMCHD1-209ENST00000583441 PIF1Q9H611 641 aa5.53□□□□□ -1.52
SMCHD1-209ENST00000583441 ADARB2Q9NS39 739 aaKnown RBP5.53□□□□□ -1.52
SMCHD1-209ENST00000583441 SLC4A7Q9Y6M7 1214 aa5.53□□□□□ -1.52
SMCHD1-209ENST00000583441 TLDC2A0PJX2 215 aa5.52□□□□□ -1.53
SMCHD1-209ENST00000583441 FAM86C2PA6NEL3 165 aa5.52□□□□□ -1.53
SMCHD1-209ENST00000583441 PDPK1O15530 556 aa5.52□□□□□ -1.53
SMCHD1-209ENST00000583441 DDAH1O94760 285 aa5.52□□□□□ -1.53
SMCHD1-209ENST00000583441 SEPHS1P49903 392 aa5.52□□□□□ -1.53
SMCHD1-209ENST00000583441 ZNF143P52747 638 aaPredicted RBP5.52□□□□□ -1.53
SMCHD1-209ENST00000583441 COL10A1Q03692 680 aa5.52□□□□□ -1.53
SMCHD1-209ENST00000583441 GIMAP6Q6P9H5 292 aa5.52□□□□□ -1.53
SMCHD1-209ENST00000583441 VHLLQ6RSH7 139 aa5.52□□□□□ -1.53
SMCHD1-209ENST00000583441 Q6ZSN1 163 aa5.52□□□□□ -1.53
SMCHD1-209ENST00000583441 EEPD1Q7L9B9 569 aa5.52□□□□□ -1.53
SMCHD1-209ENST00000583441 ULK2Q8IYT8 1036 aa5.52□□□□□ -1.53
SMCHD1-209ENST00000583441 CELF2-AS1Q8N7Q2 184 aa5.52□□□□□ -1.53
SMCHD1-209ENST00000583441 ST13P5Q8NFI4 369 aaPredicted RBP5.52□□□□□ -1.53
SMCHD1-209ENST00000583441 EPN3Q9H201 632 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms