RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 KCNA2P16389 499 aa28.25■■■□□ 2.11
SHMT1-207ENST00000580002 PTGS1P23219 599 aa28.25■■■□□ 2.11
SHMT1-207ENST00000580002 PDGFCQ9NRA1 345 aa28.25■■■□□ 2.11
SHMT1-207ENST00000580002 GJD2Q9UKL4 321 aa28.25■■■□□ 2.11
SHMT1-207ENST00000580002 MED24O75448 989 aa28.24■■■□□ 2.11
SHMT1-207ENST00000580002 PLCG1P19174 1290 aa28.24■■■□□ 2.11
SHMT1-207ENST00000580002 ARMCX2Q7L311 632 aa28.24■■■□□ 2.11
SHMT1-207ENST00000580002 KCNK18Q7Z418 384 aa28.24■■■□□ 2.11
SHMT1-207ENST00000580002 MORC4Q8TE76 937 aa28.24■■■□□ 2.11
SHMT1-207ENST00000580002 MAML3Q96JK9 1138 aa28.24■■■□□ 2.11
SHMT1-207ENST00000580002 TEKT3Q9BXF9 490 aa28.24■■■□□ 2.11
SHMT1-207ENST00000580002 RGL1Q9NZL6 768 aa28.24■■■□□ 2.11
SHMT1-207ENST00000580002 CASP1P29466 404 aa28.24■■■□□ 2.11
SHMT1-207ENST00000580002 RIT2Q99578 217 aa28.24■■■□□ 2.11
SHMT1-207ENST00000580002 SDF4Q9BRK5 362 aa28.24■■■□□ 2.11
SHMT1-207ENST00000580002 RAB34Q9BZG1 259 aa28.24■■■□□ 2.11
SHMT1-207ENST00000580002 TNMDQ9H2S6 317 aa28.24■■■□□ 2.11
SHMT1-207ENST00000580002 DISC1Q9NRI5 854 aa28.24■■■□□ 2.11
SHMT1-207ENST00000580002 FLRT1Q9NZU1 646 aa28.24■■■□□ 2.11
SHMT1-207ENST00000580002 KIAA1217Q5T5P2 1943 aa28.23■■■□□ 2.11
SHMT1-207ENST00000580002 ARIH2O95376 493 aa28.23■■■□□ 2.11
SHMT1-207ENST00000580002 MAP2K5Q13163 448 aa28.23■■■□□ 2.11
SHMT1-207ENST00000580002 PPP2R5CQ13362 524 aa28.23■■■□□ 2.11
SHMT1-207ENST00000580002 CNNM3Q8NE01 707 aa28.23■■■□□ 2.11
SHMT1-207ENST00000580002 RASSF8Q8NHQ8 419 aa28.23■■■□□ 2.11
SHMT1-207ENST00000580002 USP6NLQ92738 828 aa28.23■■■□□ 2.11
SHMT1-207ENST00000580002 TRIM47Q96LD4 638 aa28.23■■■□□ 2.11
SHMT1-207ENST00000580002 MTRQ99707 1265 aa28.23■■■□□ 2.11
SHMT1-207ENST00000580002 STAM2O75886 525 aa28.22■■■□□ 2.11
SHMT1-207ENST00000580002 SNAI1O95863 264 aaPredicted RBP28.22■■■□□ 2.11
SHMT1-207ENST00000580002 CCNE2O96020 404 aa28.22■■■□□ 2.11
SHMT1-207ENST00000580002 PRR29P0C7W0 189 aa28.22■■■□□ 2.11
SHMT1-207ENST00000580002 SPATA31C1P0DKV0 1188 aa28.22■■■□□ 2.11
SHMT1-207ENST00000580002 CCL14Q16627 93 aa28.22■■■□□ 2.11
SHMT1-207ENST00000580002 KRT79Q5XKE5 535 aa28.22■■■□□ 2.11
SHMT1-207ENST00000580002 PDXDC2PQ6P474 469 aa28.22■■■□□ 2.11
SHMT1-207ENST00000580002 REM2Q8IYK8 340 aaPredicted RBP28.22■■■□□ 2.11
SHMT1-207ENST00000580002 LRRC37A2A6NM11 1700 aa28.22■■■□□ 2.11
SHMT1-207ENST00000580002 POTEB3A0JP26 581 aa28.22■■■□□ 2.11
SHMT1-207ENST00000580002 TNPO2O14787 897 aaKnown RBP28.22■■■□□ 2.11
SHMT1-207ENST00000580002 CYP2B6P20813 491 aa28.22■■■□□ 2.11
SHMT1-207ENST00000580002 TXLNAP40222 546 aa28.22■■■□□ 2.11
SHMT1-207ENST00000580002 CCT6AP40227 531 aaKnown RBP28.22■■■□□ 2.11
SHMT1-207ENST00000580002 PSMC4P43686 418 aa28.22■■■□□ 2.11
SHMT1-207ENST00000580002 LACTBP83111 547 aaPredicted RBP28.22■■■□□ 2.11
SHMT1-207ENST00000580002 MDM2Q00987 491 aaPredicted RBP28.22■■■□□ 2.11
SHMT1-207ENST00000580002 CYP4A11Q02928 519 aa28.22■■■□□ 2.11
SHMT1-207ENST00000580002 RRAGBQ5VZM2 374 aa28.22■■■□□ 2.11
SHMT1-207ENST00000580002 POTEBQ6S5H4 581 aa28.22■■■□□ 2.11
SHMT1-207ENST00000580002 CATSPER3Q86XQ3 398 aa28.22■■■□□ 2.11
SHMT1-207ENST00000580002 SYAP1Q96A49 352 aaPredicted RBP28.22■■■□□ 2.11
SHMT1-207ENST00000580002 EIF2AK1Q9BQI3 630 aaKnown RBP28.22■■■□□ 2.11
SHMT1-207ENST00000580002 PLXNA1Q9UIW2 1896 aa28.21■■■□□ 2.11
SHMT1-207ENST00000580002 ICAM3P32942 547 aa28.21■■■□□ 2.11
SHMT1-207ENST00000580002 AFMP43652 599 aa28.21■■■□□ 2.11
SHMT1-207ENST00000580002 SP4Q02446 784 aa28.21■■■□□ 2.11
SHMT1-207ENST00000580002 PNOCQ13519 176 aa28.21■■■□□ 2.11
SHMT1-207ENST00000580002 LY6KQ17RY6 165 aa28.21■■■□□ 2.11
SHMT1-207ENST00000580002 GNPTABQ3T906 1256 aa28.21■■■□□ 2.11
SHMT1-207ENST00000580002 TIGD1Q96MW7 591 aa28.21■■■□□ 2.11
SHMT1-207ENST00000580002 GABRQQ9UN88 632 aa28.21■■■□□ 2.11
SHMT1-207ENST00000580002 ASB14A6NK59 587 aa28.2■■■□□ 2.11
SHMT1-207ENST00000580002 SLFN14P0C7P3 912 aa28.2■■■□□ 2.11
SHMT1-207ENST00000580002 STAT6P42226 847 aa28.2■■■□□ 2.11
SHMT1-207ENST00000580002 CTTNQ14247 550 aaKnown RBP28.2■■■□□ 2.11
SHMT1-207ENST00000580002 DYDC2Q96IM9 177 aa28.2■■■□□ 2.11
SHMT1-207ENST00000580002 WRAP73Q9P2S5 460 aaPredicted RBP28.2■■■□□ 2.11
SHMT1-207ENST00000580002 CEP350Q5VT06 3117 aa28.2■■■□□ 2.1
SHMT1-207ENST00000580002 MAFGO15525 162 aa28.19■■■□□ 2.1
SHMT1-207ENST00000580002 IQUBQ8NA54 791 aa28.19■■■□□ 2.1
SHMT1-207ENST00000580002 PAGE5Q96GU1 130 aa28.19■■■□□ 2.1
SHMT1-207ENST00000580002 KATNBL1Q9H079 304 aa28.19■■■□□ 2.1
SHMT1-207ENST00000580002 TBC1D22BQ9NU19 505 aa28.19■■■□□ 2.1
SHMT1-207ENST00000580002 BLOC1S4Q9NUP1 217 aa28.19■■■□□ 2.1
SHMT1-207ENST00000580002 CDKN2AIPQ9NXV6 580 aaPredicted RBP28.19■■■□□ 2.1
SHMT1-207ENST00000580002 CCDC39Q9UFE4 941 aa28.19■■■□□ 2.1
SHMT1-207ENST00000580002 KIAA1024Q9UPX6 916 aa28.19■■■□□ 2.1
SHMT1-207ENST00000580002 DOCK5Q9H7D0 1870 aa28.19■■■□□ 2.1
SHMT1-207ENST00000580002 POTEFA5A3E0 1075 aa28.19■■■□□ 2.1
SHMT1-207ENST00000580002 PSMC6P62333 389 aa28.19■■■□□ 2.1
SHMT1-207ENST00000580002 TMEM119Q4V9L6 283 aa28.19■■■□□ 2.1
SHMT1-207ENST00000580002 PRAMEF19Q5SWL8 479 aa28.19■■■□□ 2.1
SHMT1-207ENST00000580002 POTEGQ6S5H5 508 aa28.19■■■□□ 2.1
SHMT1-207ENST00000580002 CYFIP1Q7L576 1253 aa28.19■■■□□ 2.1
SHMT1-207ENST00000580002 COPS5Q92905 334 aa28.19■■■□□ 2.1
SHMT1-207ENST00000580002 CALML4Q96GE6 196 aa28.19■■■□□ 2.1
SHMT1-207ENST00000580002 HSD17B14Q9BPX1 270 aa28.19■■■□□ 2.1
SHMT1-207ENST00000580002 ZBTB39O15060 712 aa28.18■■■□□ 2.1
SHMT1-207ENST00000580002 SLITRK3O94933 977 aa28.18■■■□□ 2.1
SHMT1-207ENST00000580002 UBA1P22314 1058 aaKnown RBP28.18■■■□□ 2.1
SHMT1-207ENST00000580002 TAPT1Q6NXT6 567 aa28.18■■■□□ 2.1
SHMT1-207ENST00000580002 MAMDC4Q6UXC1 1216 aa28.18■■■□□ 2.1
SHMT1-207ENST00000580002 RBM43Q6ZSC3 357 aaKnown RBP28.18■■■□□ 2.1
SHMT1-207ENST00000580002 SH3RF1Q7Z6J0 888 aa28.18■■■□□ 2.1
SHMT1-207ENST00000580002 ZNF467Q7Z7K2 595 aaPredicted RBP28.18■■■□□ 2.1
SHMT1-207ENST00000580002 TINF2Q9BSI4 451 aa28.18■■■□□ 2.1
SHMT1-207ENST00000580002 DIS3Q9Y2L1 958 aaKnown RBP28.18■■■□□ 2.1
SHMT1-207ENST00000580002 B4DLN1 442 aa28.17■■■□□ 2.1
SHMT1-207ENST00000580002 E9PMD0 336 aa28.17■■■□□ 2.1
SHMT1-207ENST00000580002 SP3Q02447 781 aa28.17■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms