RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 SPIRE1Q08AE8 756 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 ITGB3BPQ13352 177 aaPredicted RBP12.09□□□□□ -0.47
SS18-213ENST00000579640 NEDD9Q14511 834 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 TTLL4Q14679 1199 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 HAUS3Q68CZ6 603 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 FBXO16Q8IX29 292 aaPredicted RBP12.09□□□□□ -0.47
SS18-213ENST00000579640 SCFD2Q8WU76 684 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 ZNF296Q8WUU4 475 aaPredicted RBP12.09□□□□□ -0.47
SS18-213ENST00000579640 SYMPKQ92797 1274 aaKnown RBP12.09□□□□□ -0.47
SS18-213ENST00000579640 CCSER1Q9C0I3 900 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 SRRDQ9UH36 339 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 NRBP1Q9UHY1 535 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 HPSEQ9Y251 543 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 DDX49Q9Y6V7 483 aaKnown RBP12.09□□□□□ -0.47
SS18-213ENST00000579640 ATP9AO75110 1047 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 IGHA2P01877 340 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 PFKFB1P16118 471 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 PRKCZQ05513 592 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 FAM160A1Q05DH4 1040 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 KLHL40Q2TBA0 621 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 KRT79Q5XKE5 535 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 B3GNT9Q6UX72 402 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 EEPD1Q7L9B9 569 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 RDM1Q8NG50 284 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 GJA10Q969M2 543 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 KATNBL1Q9H079 304 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 CCDC39Q9UFE4 941 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 KCNH3Q9ULD8 1083 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 GABRQQ9UN88 632 aa12.09□□□□□ -0.47
SS18-213ENST00000579640 A0A1B0GVL5 298 aa12.08□□□□□ -0.48
SS18-213ENST00000579640 POTEMA6NI47 508 aa12.08□□□□□ -0.48
SS18-213ENST00000579640 SFNP31947 248 aa12.08□□□□□ -0.48
SS18-213ENST00000579640 JAK3P52333 1124 aa12.08□□□□□ -0.48
SS18-213ENST00000579640 ACVR2BQ13705 512 aa12.08□□□□□ -0.48
SS18-213ENST00000579640 TPRNQ4KMQ1 711 aa12.08□□□□□ -0.48
SS18-213ENST00000579640 SPECC1Q5M775 1068 aa12.08□□□□□ -0.48
SS18-213ENST00000579640 MFSD14CQ5VZR4 134 aa12.08□□□□□ -0.48
SS18-213ENST00000579640 NCAPH2Q6IBW4 605 aa12.08□□□□□ -0.48
SS18-213ENST00000579640 ZNF746Q6NUN9 644 aaPredicted RBP12.08□□□□□ -0.48
SS18-213ENST00000579640 TAPT1Q6NXT6 567 aa12.08□□□□□ -0.48
SS18-213ENST00000579640 CABP7Q86V35 215 aa12.08□□□□□ -0.48
SS18-213ENST00000579640 GPT2Q8TD30 523 aa12.08□□□□□ -0.48
SS18-213ENST00000579640 EPSTI1Q96J88 318 aa12.08□□□□□ -0.48
SS18-213ENST00000579640 GOLPH3LQ9H4A5 285 aa12.08□□□□□ -0.48
SS18-213ENST00000579640 JPH1Q9HDC5 661 aaPredicted RBP12.08□□□□□ -0.48
SS18-213ENST00000579640 FLRT1Q9NZU1 646 aa12.08□□□□□ -0.48
SS18-213ENST00000579640 PKD2L1Q9P0L9 805 aa12.08□□□□□ -0.48
SS18-213ENST00000579640 DDX41Q9UJV9 622 aaKnown RBP12.08□□□□□ -0.48
SS18-213ENST00000579640 KDM3AQ9Y4C1 1321 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 UBA1P22314 1058 aaKnown RBP12.07□□□□□ -0.48
SS18-213ENST00000579640 SYKP43405 635 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 NDUFA8P51970 172 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 EPHA7Q15375 998 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 CCL14Q16627 93 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 IQSEC1Q6DN90 963 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 CCDC62Q6P9F0 684 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 SMAP1Q8IYB5 467 aaPredicted RBP12.07□□□□□ -0.48
SS18-213ENST00000579640 KCTD17Q8N5Z5 321 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 ENGASEQ8NFI3 743 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 NEK9Q8TD19 979 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 SNX29Q8TEQ0 813 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 CALML4Q96GE6 196 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 UIMC1Q96RL1 719 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 UNC45AQ9H3U1 944 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 SLC9A2Q9UBY0 812 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 USP25Q9UHP3 1055 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 WDR64B1ANS9 1081 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 NKRFO15226 690 aaKnown RBP eCLIP12.07□□□□□ -0.48
SS18-213ENST00000579640 TRAK2O60296 914 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 TXNP10599 105 aaKnown RBP12.07□□□□□ -0.48
SS18-213ENST00000579640 LIG1P18858 919 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 MUTP22033 750 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 CAP1Q01518 475 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 SP2Q02086 613 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 HYIQ5T013 277 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 METTL7BQ6UX53 244 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 USP49Q70CQ1 688 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 MIER3Q7Z3K6 550 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 FMR1NBQ8N0W7 255 aaPredicted RBP12.07□□□□□ -0.48
SS18-213ENST00000579640 RASSF8Q8NHQ8 419 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 CCDC34Q96HJ3 373 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 TIGD1Q96MW7 591 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 POLR3CQ9BUI4 534 aaPredicted RBP12.07□□□□□ -0.48
SS18-213ENST00000579640 NT5C3AQ9H0P0 336 aa12.07□□□□□ -0.48
SS18-213ENST00000579640 DDX19AQ9NUU7 478 aaKnown RBP12.07□□□□□ -0.48
SS18-213ENST00000579640 ZHX1Q9UKY1 873 aaPredicted RBP12.07□□□□□ -0.48
SS18-213ENST00000579640 PP2D1A8MPX8 630 aa12.06□□□□□ -0.48
SS18-213ENST00000579640 DDX39AO00148 427 aaKnown RBP12.06□□□□□ -0.48
SS18-213ENST00000579640 CHMP2AO43633 222 aa12.06□□□□□ -0.48
SS18-213ENST00000579640 KINO60870 393 aaKnown RBP12.06□□□□□ -0.48
SS18-213ENST00000579640 ZNF202O95125 648 aa12.06□□□□□ -0.48
SS18-213ENST00000579640 GGPS1O95749 300 aa12.06□□□□□ -0.48
SS18-213ENST00000579640 RPA1P27694 616 aa12.06□□□□□ -0.48
SS18-213ENST00000579640 CCT6AP40227 531 aaKnown RBP12.06□□□□□ -0.48
SS18-213ENST00000579640 SNW1Q13573 536 aaKnown RBP12.06□□□□□ -0.48
SS18-213ENST00000579640 CELF3Q5SZQ8 465 aaKnown RBP12.06□□□□□ -0.48
SS18-213ENST00000579640 IQUBQ8NA54 791 aa12.06□□□□□ -0.48
SS18-213ENST00000579640 RAET1EQ8TD07 263 aa12.06□□□□□ -0.48
SS18-213ENST00000579640 PXYLP1Q8TE99 480 aa12.06□□□□□ -0.48
SS18-213ENST00000579640 TRIB2Q92519 343 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms