RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 FMR1NBQ8N0W7 255 aaPredicted RBP18.19■□□□□ 0.5
SS18-211ENST00000578954 EPSTI1Q96J88 318 aa18.19■□□□□ 0.5
SS18-211ENST00000578954 STK24Q9Y6E0 443 aa18.19■□□□□ 0.5
SS18-211ENST00000578954 TRAK2O60296 914 aa18.18■□□□□ 0.5
SS18-211ENST00000578954 GNRH1P01148 92 aa18.18■□□□□ 0.5
SS18-211ENST00000578954 NDUFA8P51970 172 aa18.18■□□□□ 0.5
SS18-211ENST00000578954 CCDC62Q6P9F0 684 aa18.18■□□□□ 0.5
SS18-211ENST00000578954 ERO1AQ96HE7 468 aa18.18■□□□□ 0.5
SS18-211ENST00000578954 MMTAG2Q9BU76 263 aaKnown RBP18.18■□□□□ 0.5
SS18-211ENST00000578954 WBP1LQ9NX94 342 aa18.18■□□□□ 0.5
SS18-211ENST00000578954 LRWD1Q9UFC0 647 aa18.18■□□□□ 0.5
SS18-211ENST00000578954 PP2D1A8MPX8 630 aa18.17■□□□□ 0.5
SS18-211ENST00000578954 FKTNO75072 461 aa18.17■□□□□ 0.5
SS18-211ENST00000578954 CYP2B6P20813 491 aa18.17■□□□□ 0.5
SS18-211ENST00000578954 HYIQ5T013 277 aa18.17■□□□□ 0.5
SS18-211ENST00000578954 TAPT1Q6NXT6 567 aa18.17■□□□□ 0.5
SS18-211ENST00000578954 SEPT14Q6ZU15 432 aa18.17■□□□□ 0.5
SS18-211ENST00000578954 FBXO16Q8IX29 292 aaPredicted RBP18.17■□□□□ 0.5
SS18-211ENST00000578954 UNC45AQ9H3U1 944 aa18.17■□□□□ 0.5
SS18-211ENST00000578954 ABHD16BQ9H3Z7 469 aa18.17■□□□□ 0.5
SS18-211ENST00000578954 FLRT1Q9NZU1 646 aa18.17■□□□□ 0.5
SS18-211ENST00000578954 KCNH3Q9ULD8 1083 aa18.17■□□□□ 0.5
SS18-211ENST00000578954 NR1I2O75469 434 aa18.16■□□□□ 0.5
SS18-211ENST00000578954 UBA1P22314 1058 aaKnown RBP18.16■□□□□ 0.5
SS18-211ENST00000578954 TXLNAP40222 546 aa18.16■□□□□ 0.5
SS18-211ENST00000578954 UBA7P41226 1012 aa18.16■□□□□ 0.5
SS18-211ENST00000578954 SYKP43405 635 aa18.16■□□□□ 0.5
SS18-211ENST00000578954 FLT3LGP49771 235 aa18.16■□□□□ 0.5
SS18-211ENST00000578954 KRT76Q01546 638 aa18.16■□□□□ 0.5
SS18-211ENST00000578954 PRKCZQ05513 592 aa18.16■□□□□ 0.5
SS18-211ENST00000578954 CABP7Q86V35 215 aa18.16■□□□□ 0.5
SS18-211ENST00000578954 GIMAP8Q8ND71 665 aaPredicted RBP18.16■□□□□ 0.5
SS18-211ENST00000578954 RDM1Q8NG50 284 aa18.16■□□□□ 0.5
SS18-211ENST00000578954 CD99L2Q8TCZ2 262 aa18.16■□□□□ 0.5
SS18-211ENST00000578954 SCFD2Q8WU76 684 aa18.16■□□□□ 0.5
SS18-211ENST00000578954 ZNF296Q8WUU4 475 aaPredicted RBP18.16■□□□□ 0.5
SS18-211ENST00000578954 TIGD1Q96MW7 591 aa18.16■□□□□ 0.5
SS18-211ENST00000578954 UIMC1Q96RL1 719 aa18.16■□□□□ 0.5
SS18-211ENST00000578954 SDF4Q9BRK5 362 aa18.16■□□□□ 0.5
SS18-211ENST00000578954 PYM1Q9BRP8 204 aaKnown RBP18.16■□□□□ 0.5
SS18-211ENST00000578954 DDX19AQ9NUU7 478 aaKnown RBP18.16■□□□□ 0.5
SS18-211ENST00000578954 SRRDQ9UH36 339 aa18.16■□□□□ 0.5
SS18-211ENST00000578954 DDX41Q9UJV9 622 aaKnown RBP18.16■□□□□ 0.5
SS18-211ENST00000578954 GABRQQ9UN88 632 aa18.16■□□□□ 0.5
SS18-211ENST00000578954 A0A087X0B3 334 aa18.15■□□□□ 0.5
SS18-211ENST00000578954 EML1O00423 815 aa18.15■□□□□ 0.5
SS18-211ENST00000578954 ECM2O94769 699 aaPredicted RBP18.15■□□□□ 0.5
SS18-211ENST00000578954 ARIH2O95376 493 aa18.15■□□□□ 0.5
SS18-211ENST00000578954 HOXD10P28358 340 aa18.15■□□□□ 0.5
SS18-211ENST00000578954 CDC25AP30304 524 aa18.15■□□□□ 0.5
SS18-211ENST00000578954 SP2Q02086 613 aa18.15■□□□□ 0.5
SS18-211ENST00000578954 NEDD9Q14511 834 aa18.15■□□□□ 0.5
SS18-211ENST00000578954 EPHA7Q15375 998 aa18.15■□□□□ 0.5
SS18-211ENST00000578954 E2F4Q16254 413 aa18.15■□□□□ 0.5
SS18-211ENST00000578954 CCL14Q16627 93 aa18.15■□□□□ 0.5
SS18-211ENST00000578954 KRT79Q5XKE5 535 aa18.15■□□□□ 0.5
SS18-211ENST00000578954 HAUS3Q68CZ6 603 aa18.15■□□□□ 0.5
SS18-211ENST00000578954 ZNF746Q6NUN9 644 aaPredicted RBP18.15■□□□□ 0.5
SS18-211ENST00000578954 EEPD1Q7L9B9 569 aa18.15■□□□□ 0.5
SS18-211ENST00000578954 TRMT44Q8IYL2 757 aaKnown RBP18.15■□□□□ 0.5
SS18-211ENST00000578954 NEK9Q8TD19 979 aa18.15■□□□□ 0.5
SS18-211ENST00000578954 DACT1Q9NYF0 836 aa18.15■□□□□ 0.5
SS18-211ENST00000578954 USP25Q9UHP3 1055 aa18.15■□□□□ 0.5
SS18-211ENST00000578954 NRBP1Q9UHY1 535 aa18.15■□□□□ 0.5
SS18-211ENST00000578954 FARP2O94887 1054 aaPredicted RBP18.14■□□□□ 0.49
SS18-211ENST00000578954 ZNF202O95125 648 aa18.14■□□□□ 0.49
SS18-211ENST00000578954 CCNE2O96020 404 aa18.14■□□□□ 0.49
SS18-211ENST00000578954 MUTP22033 750 aa18.14■□□□□ 0.49
SS18-211ENST00000578954 SFNP31947 248 aa18.14■□□□□ 0.49
SS18-211ENST00000578954 JAK3P52333 1124 aa18.14■□□□□ 0.49
SS18-211ENST00000578954 ACVR2BQ13705 512 aa18.14■□□□□ 0.49
SS18-211ENST00000578954 TTLL4Q14679 1199 aa18.14■□□□□ 0.49
SS18-211ENST00000578954 ARHGEF6Q15052 776 aa18.14■□□□□ 0.49
SS18-211ENST00000578954 TPRNQ4KMQ1 711 aa18.14■□□□□ 0.49
SS18-211ENST00000578954 TMEM119Q4V9L6 283 aa18.14■□□□□ 0.49
SS18-211ENST00000578954 NCAPH2Q6IBW4 605 aa18.14■□□□□ 0.49
SS18-211ENST00000578954 SMAP1Q8IYB5 467 aaPredicted RBP18.14■□□□□ 0.49
SS18-211ENST00000578954 KCTD17Q8N5Z5 321 aa18.14■□□□□ 0.49
SS18-211ENST00000578954 ERMNQ8TAM6 284 aa18.14■□□□□ 0.49
SS18-211ENST00000578954 SNX29Q8TEQ0 813 aa18.14■□□□□ 0.49
SS18-211ENST00000578954 HSD17B14Q9BPX1 270 aa18.14■□□□□ 0.49
SS18-211ENST00000578954 BEGAINQ9BUH8 593 aa18.14■□□□□ 0.49
SS18-211ENST00000578954 POLR3CQ9BUI4 534 aaPredicted RBP18.14■□□□□ 0.49
SS18-211ENST00000578954 JPH1Q9HDC5 661 aaPredicted RBP18.14■□□□□ 0.49
SS18-211ENST00000578954 DISC1Q9NRI5 854 aa18.14■□□□□ 0.49
SS18-211ENST00000578954 PKD2L1Q9P0L9 805 aa18.14■□□□□ 0.49
SS18-211ENST00000578954 KDM3AQ9Y4C1 1321 aa18.14■□□□□ 0.49
SS18-211ENST00000578954 RPA1P27694 616 aa18.13■□□□□ 0.49
SS18-211ENST00000578954 PRMT2P55345 433 aa18.13■□□□□ 0.49
SS18-211ENST00000578954 GRB10Q13322 594 aa18.13■□□□□ 0.49
SS18-211ENST00000578954 KARSQ15046 597 aaKnown RBP18.13■□□□□ 0.49
SS18-211ENST00000578954 METTL7BQ6UX53 244 aa18.13■□□□□ 0.49
SS18-211ENST00000578954 ELOA2Q8IYF1 753 aaPredicted RBP18.13■□□□□ 0.49
SS18-211ENST00000578954 PNMA5Q96PV4 448 aa18.13■□□□□ 0.49
SS18-211ENST00000578954 EIF2AK1Q9BQI3 630 aaKnown RBP18.13■□□□□ 0.49
SS18-211ENST00000578954 TUFT1Q9NNX1 390 aa18.13■□□□□ 0.49
SS18-211ENST00000578954 PDGFCQ9NRA1 345 aa18.13■□□□□ 0.49
SS18-211ENST00000578954 SLC9A2Q9UBY0 812 aa18.13■□□□□ 0.49
SS18-211ENST00000578954 CCDC39Q9UFE4 941 aa18.13■□□□□ 0.49
SS18-211ENST00000578954 WDR64B1ANS9 1081 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms