RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 TECP42680 631 aa19.3■□□□□ 0.68
VPS53-218ENST00000575207 VARS2Q5ST30 1063 aaKnown RBP19.3■□□□□ 0.68
VPS53-218ENST00000575207 DHX37Q8IY37 1157 aaKnown RBP19.3■□□□□ 0.68
VPS53-218ENST00000575207 RIN2Q8WYP3 895 aaPredicted RBP19.3■□□□□ 0.68
VPS53-218ENST00000575207 NECTIN4Q96NY8 510 aa19.3■□□□□ 0.68
VPS53-218ENST00000575207 RNF216Q9NWF9 866 aaPredicted RBP19.3■□□□□ 0.68
VPS53-218ENST00000575207 CCPG1Q9ULG6 757 aa19.3■□□□□ 0.68
VPS53-218ENST00000575207 TTC3P53804 2025 aa19.29■□□□□ 0.68
VPS53-218ENST00000575207 RASGRP4Q8TDF6 673 aa19.29■□□□□ 0.68
VPS53-218ENST00000575207 EAF2Q96CJ1 260 aaPredicted RBP19.29■□□□□ 0.68
VPS53-218ENST00000575207 POMKQ9H5K3 350 aa19.29■□□□□ 0.68
VPS53-218ENST00000575207 ERVK-5Q9HDB9 667 aa19.29■□□□□ 0.68
VPS53-218ENST00000575207 MTMR4Q9NYA4 1195 aa19.29■□□□□ 0.68
VPS53-218ENST00000575207 NFIBO00712 420 aa19.28■□□□□ 0.68
VPS53-218ENST00000575207 ICAM1P05362 532 aa19.28■□□□□ 0.68
VPS53-218ENST00000575207 SNAP25P60880 206 aa19.28■□□□□ 0.68
VPS53-218ENST00000575207 PPM1JQ5JR12 505 aa19.28■□□□□ 0.68
VPS53-218ENST00000575207 DNERQ8NFT8 737 aa19.28■□□□□ 0.68
VPS53-218ENST00000575207 MICAL1Q8TDZ2 1067 aa19.28■□□□□ 0.68
VPS53-218ENST00000575207 CEP95Q96GE4 821 aa19.28■□□□□ 0.68
VPS53-218ENST00000575207 BORCS6Q96GS4 357 aa19.28■□□□□ 0.68
VPS53-218ENST00000575207 GMCL1Q96IK5 515 aa19.28■□□□□ 0.68
VPS53-218ENST00000575207 APOL5Q9BWW9 433 aa19.28■□□□□ 0.68
VPS53-218ENST00000575207 API5Q9BZZ5 524 aaKnown RBP19.28■□□□□ 0.68
VPS53-218ENST00000575207 NCDNQ9UBB6 729 aa19.28■□□□□ 0.68
VPS53-218ENST00000575207 LIMD1Q9UGP4 676 aa19.28■□□□□ 0.68
VPS53-218ENST00000575207 PTPDC1A2A3K4 754 aa19.27■□□□□ 0.68
VPS53-218ENST00000575207 MBD4O95243 580 aa19.27■□□□□ 0.68
VPS53-218ENST00000575207 TTLL1O95922 423 aa19.27■□□□□ 0.68
VPS53-218ENST00000575207 UBE3AQ05086 875 aa19.27■□□□□ 0.68
VPS53-218ENST00000575207 IKQ13123 557 aaPredicted RBP19.27■□□□□ 0.68
VPS53-218ENST00000575207 LY6KQ17RY6 165 aa19.27■□□□□ 0.68
VPS53-218ENST00000575207 SLC30A10Q6XR72 485 aa19.27■□□□□ 0.68
VPS53-218ENST00000575207 CMTR2Q8IYT2 770 aaKnown RBP19.27■□□□□ 0.68
VPS53-218ENST00000575207 PLCD3Q8N3E9 789 aa19.27■□□□□ 0.68
VPS53-218ENST00000575207 EMID1Q96A84 441 aaPredicted RBP19.27■□□□□ 0.68
VPS53-218ENST00000575207 DDRGK1Q96HY6 314 aa19.27■□□□□ 0.68
VPS53-218ENST00000575207 SMC4Q9NTJ3 1288 aa19.27■□□□□ 0.68
VPS53-218ENST00000575207 CDH22Q9UJ99 828 aa19.27■□□□□ 0.68
VPS53-218ENST00000575207 ANGPTL2Q9UKU9 493 aa19.27■□□□□ 0.68
VPS53-218ENST00000575207 PRR12Q9ULL5 1215 aa19.27■□□□□ 0.68
VPS53-218ENST00000575207 CNOT1A5YKK6 2376 aaKnown RBP19.26■□□□□ 0.67
VPS53-218ENST00000575207 KINO60870 393 aaKnown RBP19.26■□□□□ 0.67
VPS53-218ENST00000575207 HOXC8P31273 242 aa19.26■□□□□ 0.67
VPS53-218ENST00000575207 OS9Q13438 667 aaPredicted RBP19.26■□□□□ 0.67
VPS53-218ENST00000575207 CHST3Q7LGC8 479 aa19.26■□□□□ 0.67
VPS53-218ENST00000575207 MKNK2Q9HBH9 465 aa19.26■□□□□ 0.67
VPS53-218ENST00000575207 CACNA1IQ9P0X4 2223 aa19.25■□□□□ 0.67
VPS53-218ENST00000575207 B4DLN1 442 aa19.25■□□□□ 0.67
VPS53-218ENST00000575207 ENPP3O14638 875 aa19.25■□□□□ 0.67
VPS53-218ENST00000575207 GNAI2P04899 355 aa19.25■□□□□ 0.67
VPS53-218ENST00000575207 CTSHP09668 335 aa19.25■□□□□ 0.67
VPS53-218ENST00000575207 ZNF286BP0CG31 522 aa19.25■□□□□ 0.67
VPS53-218ENST00000575207 HOXD8P13378 290 aaPredicted RBP19.25■□□□□ 0.67
VPS53-218ENST00000575207 CALML3P27482 149 aa19.25■□□□□ 0.67
VPS53-218ENST00000575207 SLC1A4P43007 532 aa19.25■□□□□ 0.67
VPS53-218ENST00000575207 MRPL12P52815 198 aaKnown RBP19.25■□□□□ 0.67
VPS53-218ENST00000575207 POLA2Q14181 598 aa19.25■□□□□ 0.67
VPS53-218ENST00000575207 SIX5Q8N196 739 aa19.25■□□□□ 0.67
VPS53-218ENST00000575207 ATP6V0A1Q93050 837 aa19.25■□□□□ 0.67
VPS53-218ENST00000575207 ADAM7Q9H2U9 754 aa19.25■□□□□ 0.67
VPS53-218ENST00000575207 ISY1Q9ULR0 285 aaKnown RBP19.25■□□□□ 0.67
VPS53-218ENST00000575207 NOB1Q9ULX3 412 aaKnown RBP19.25■□□□□ 0.67
VPS53-218ENST00000575207 KIAA1671Q9BY89 1806 aa19.24■□□□□ 0.67
VPS53-218ENST00000575207 TGM1P22735 817 aa19.24■□□□□ 0.67
VPS53-218ENST00000575207 ITIH3Q06033 890 aa19.24■□□□□ 0.67
VPS53-218ENST00000575207 PDE12Q6L8Q7 609 aaKnown RBP19.24■□□□□ 0.67
VPS53-218ENST00000575207 TDRD5Q8NAT2 981 aaKnown RBP19.24■□□□□ 0.67
VPS53-218ENST00000575207 PPTC7Q8NI37 304 aa19.24■□□□□ 0.67
VPS53-218ENST00000575207 ARPP21Q9UBL0 812 aaPredicted RBP19.24■□□□□ 0.67
VPS53-218ENST00000575207 USTQ9Y2C2 406 aa19.24■□□□□ 0.67
VPS53-218ENST00000575207 PLXNA4Q9HCM2 1894 aa19.23■□□□□ 0.67
VPS53-218ENST00000575207 PROS1P07225 676 aa19.23■□□□□ 0.67
VPS53-218ENST00000575207 TBC1D8BQ0IIM8 1120 aa19.23■□□□□ 0.67
VPS53-218ENST00000575207 FAM26DQ5JW98 314 aa19.23■□□□□ 0.67
VPS53-218ENST00000575207 CES5AQ6NT32 575 aa19.23■□□□□ 0.67
VPS53-218ENST00000575207 RNF207Q6ZRF8 634 aa19.23■□□□□ 0.67
VPS53-218ENST00000575207 DUSP12Q9UNI6 340 aa19.23■□□□□ 0.67
VPS53-218ENST00000575207 C17orf102A2RUQ5 167 aa19.22■□□□□ 0.67
VPS53-218ENST00000575207 FSCN2O14926 492 aa19.22■□□□□ 0.67
VPS53-218ENST00000575207 MCCP23508 829 aa19.22■□□□□ 0.67
VPS53-218ENST00000575207 ERVFC1P60507 584 aa19.22■□□□□ 0.67
VPS53-218ENST00000575207 RPS6P62753 249 aaKnown RBP19.22■□□□□ 0.67
VPS53-218ENST00000575207 SHC2P98077 582 aa19.22■□□□□ 0.67
VPS53-218ENST00000575207 TPRNQ4KMQ1 711 aa19.22■□□□□ 0.67
VPS53-218ENST00000575207 C1orf210Q8IVY1 113 aa19.22■□□□□ 0.67
VPS53-218ENST00000575207 CLEC4DQ8WXI8 215 aa19.22■□□□□ 0.67
VPS53-218ENST00000575207 FBXL21Q9UKT6 434 aa19.22■□□□□ 0.67
VPS53-218ENST00000575207 TREHO43280 583 aa19.21■□□□□ 0.67
VPS53-218ENST00000575207 PPFIA3O75145 1194 aa19.21■□□□□ 0.67
VPS53-218ENST00000575207 SURF6O75683 361 aaKnown RBP19.21■□□□□ 0.67
VPS53-218ENST00000575207 PMLP29590 882 aa19.21■□□□□ 0.67
VPS53-218ENST00000575207 MTHFRP42898 656 aa19.21■□□□□ 0.67
VPS53-218ENST00000575207 TDGQ13569 410 aa19.21■□□□□ 0.67
VPS53-218ENST00000575207 SBK1Q52WX2 424 aa19.21■□□□□ 0.67
VPS53-218ENST00000575207 RCSD1Q6JBY9 416 aa19.21■□□□□ 0.67
VPS53-218ENST00000575207 RANBP17Q9H2T7 1088 aaKnown RBP19.21■□□□□ 0.67
VPS53-218ENST00000575207 DLGAP2Q9P1A6 1054 aa19.21■□□□□ 0.67
VPS53-218ENST00000575207 DDX41Q9UJV9 622 aaKnown RBP19.21■□□□□ 0.67
VPS53-218ENST00000575207 UNC79Q9P2D8 2635 aa19.21■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms