RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 PDCD2LQ9BRP1 358 aa9.32□□□□□ -0.92
VPS53-214ENST00000572607 MTG1Q9BT17 334 aaPredicted RBP9.32□□□□□ -0.92
VPS53-214ENST00000572607 TTYH1Q9H313 450 aaPredicted RBP9.32□□□□□ -0.92
VPS53-214ENST00000572607 EHMT1Q9H9B1 1298 aa9.32□□□□□ -0.92
VPS53-214ENST00000572607 SNX14Q9Y5W7 946 aa9.32□□□□□ -0.92
VPS53-214ENST00000572607 TRIM43BA6NCK2 446 aa9.31□□□□□ -0.92
VPS53-214ENST00000572607 SPDYE3A6NKU9 549 aa9.31□□□□□ -0.92
VPS53-214ENST00000572607 hCG_1984214I3L0E3 225 aa9.31□□□□□ -0.92
VPS53-214ENST00000572607 STAM2O75886 525 aa9.31□□□□□ -0.92
VPS53-214ENST00000572607 PTGS1P23219 599 aa9.31□□□□□ -0.92
VPS53-214ENST00000572607 RPS6KB1P23443 525 aa9.31□□□□□ -0.92
VPS53-214ENST00000572607 NAPAP54920 295 aa9.31□□□□□ -0.92
VPS53-214ENST00000572607 AKAP17AQ02040 695 aaKnown RBP9.31□□□□□ -0.92
VPS53-214ENST00000572607 FPGSQ05932 587 aa9.31□□□□□ -0.92
VPS53-214ENST00000572607 FAAP100Q0VG06 881 aa9.31□□□□□ -0.92
VPS53-214ENST00000572607 LAMC2Q13753 1193 aa9.31□□□□□ -0.92
VPS53-214ENST00000572607 COL9A3Q14050 684 aaPredicted RBP9.31□□□□□ -0.92
VPS53-214ENST00000572607 C9orf50Q5SZB4 431 aa9.31□□□□□ -0.92
VPS53-214ENST00000572607 PPP1R18Q6NYC8 613 aa9.31□□□□□ -0.92
VPS53-214ENST00000572607 XRRA1Q6P2D8 792 aa9.31□□□□□ -0.92
VPS53-214ENST00000572607 VSIG10LQ86VR7 867 aa9.31□□□□□ -0.92
VPS53-214ENST00000572607 ZNF713Q8N859 430 aaPredicted RBP9.31□□□□□ -0.92
VPS53-214ENST00000572607 COPS5Q92905 334 aa9.31□□□□□ -0.92
VPS53-214ENST00000572607 BADQ92934 168 aa9.31□□□□□ -0.92
VPS53-214ENST00000572607 BRF1Q92994 677 aa9.31□□□□□ -0.92
VPS53-214ENST00000572607 TRIM43Q96BQ3 446 aaPredicted RBP9.31□□□□□ -0.92
VPS53-214ENST00000572607 CDX2Q99626 313 aaPredicted RBP9.31□□□□□ -0.92
VPS53-214ENST00000572607 PSTPIP2Q9H939 334 aa9.31□□□□□ -0.92
VPS53-214ENST00000572607 WDR70Q9NW82 654 aa9.31□□□□□ -0.92
VPS53-214ENST00000572607 DDX41Q9UJV9 622 aaKnown RBP9.31□□□□□ -0.92
VPS53-214ENST00000572607 BRPF3Q9ULD4 1205 aa9.31□□□□□ -0.92
VPS53-214ENST00000572607 hCG_1642624A0A1W2PR95 340 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 A6NJR5 290 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 PIK3CDO00329 1044 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 ARIH2O95376 493 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 MMP3P08254 477 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 SUPT20HL2P0C7V6 817 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 TGFB3P10600 412 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 CPA1P15085 419 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 CDK7P50613 346 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 CHMP4BP1P59074 171 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 PSMC6P62333 389 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 PURAQ00577 322 aaKnown RBP9.3□□□□□ -0.92
VPS53-214ENST00000572607 APOBRQ0VD83 1088 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 SHHQ15465 462 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 LY6KQ17RY6 165 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 FAM47CQ5HY64 1035 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 CCDC62Q6P9F0 684 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 USP17L6PQ6QN14 398 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 SH3RF1Q7Z6J0 888 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 NLRX1Q86UT6 975 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 TEX2Q8IWB9 1127 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 FAM126BQ8IXS8 530 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 DHX37Q8IY37 1157 aaKnown RBP9.3□□□□□ -0.92
VPS53-214ENST00000572607 TMEM199Q8N511 208 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 AFG1LQ8WV93 481 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 TATDN2Q93075 761 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 EMID1Q96A84 441 aaPredicted RBP9.3□□□□□ -0.92
VPS53-214ENST00000572607 KATNAL1Q9BW62 490 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 GLT8D2Q9H1C3 349 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 SEMA6BQ9H3T3 888 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 MLXIPQ9HAP2 919 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 CHD7Q9P2D1 2997 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 NOD1Q9Y239 953 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 CNTNAP5Q8WYK1 1306 aa9.3□□□□□ -0.92
VPS53-214ENST00000572607 LCTP09848 1927 aa9.29□□□□□ -0.92
VPS53-214ENST00000572607 GRXCR2A6NFK2 248 aa9.29□□□□□ -0.92
VPS53-214ENST00000572607 SMAPO00193 183 aa9.29□□□□□ -0.92
VPS53-214ENST00000572607 NOP56O00567 594 aaKnown RBP9.29□□□□□ -0.92
VPS53-214ENST00000572607 FIBPO43427 364 aa9.29□□□□□ -0.92
VPS53-214ENST00000572607 GGPS1O95749 300 aa9.29□□□□□ -0.92
VPS53-214ENST00000572607 TIMP1P01033 207 aa9.29□□□□□ -0.92
VPS53-214ENST00000572607 ADCY7P51828 1080 aa9.29□□□□□ -0.92
VPS53-214ENST00000572607 PTPN11Q06124 597 aaPredicted RBP9.29□□□□□ -0.92
VPS53-214ENST00000572607 ARHGAP1Q07960 439 aa9.29□□□□□ -0.92
VPS53-214ENST00000572607 PPIGQ13427 754 aaKnown RBP eCLIP9.29□□□□□ -0.92
VPS53-214ENST00000572607 DGKDQ16760 1214 aa9.29□□□□□ -0.92
VPS53-214ENST00000572607 MFSD5Q6N075 450 aa9.29□□□□□ -0.92
VPS53-214ENST00000572607 RUFY3Q7L099 469 aa9.29□□□□□ -0.92
VPS53-214ENST00000572607 SLC43A3Q8NBI5 491 aa9.29□□□□□ -0.92
VPS53-214ENST00000572607 CCDC12Q8WUD4 166 aaPredicted RBP9.29□□□□□ -0.92
VPS53-214ENST00000572607 GPKOWQ92917 476 aaPredicted RBP eCLIP9.29□□□□□ -0.92
VPS53-214ENST00000572607 CDHR1Q96JP9 859 aa9.29□□□□□ -0.92
VPS53-214ENST00000572607 USP26Q9BXU7 913 aa9.29□□□□□ -0.92
VPS53-214ENST00000572607 PPP1R12CQ9BZL4 782 aa9.29□□□□□ -0.92
VPS53-214ENST00000572607 PRDM6Q9NQX0 595 aa9.29□□□□□ -0.92
VPS53-214ENST00000572607 TBX21Q9UL17 535 aa9.29□□□□□ -0.92
VPS53-214ENST00000572607 CYP46A1Q9Y6A2 500 aa9.29□□□□□ -0.92
VPS53-214ENST00000572607 V9GY48 417 aaPredicted RBP9.29□□□□□ -0.92
VPS53-214ENST00000572607 MCM3APO60318 1980 aa9.29□□□□□ -0.92
VPS53-214ENST00000572607 FRMPD4Q14CM0 1322 aa9.29□□□□□ -0.92
VPS53-214ENST00000572607 MEIS2O14770 477 aa9.28□□□□□ -0.92
VPS53-214ENST00000572607 CD4P01730 458 aa9.28□□□□□ -0.92
VPS53-214ENST00000572607 UBA1P22314 1058 aaKnown RBP9.28□□□□□ -0.92
VPS53-214ENST00000572607 ITGB8P26012 769 aa9.28□□□□□ -0.92
VPS53-214ENST00000572607 NEDD9Q14511 834 aa9.28□□□□□ -0.92
VPS53-214ENST00000572607 TJAP1Q5JTD0 557 aa9.28□□□□□ -0.92
VPS53-214ENST00000572607 PCNX4Q63HM2 1172 aa9.28□□□□□ -0.92
VPS53-214ENST00000572607 WWC2Q6AWC2 1192 aa9.28□□□□□ -0.92
VPS53-214ENST00000572607 NFRKBQ6P4R8 1299 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms