RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 DNAH14Q0VDD8 3507 aa15.36■□□□□ 0.05
CCDC40-208ENST00000572270 GVINP1Q7Z2Y8 2422 aa15.36■□□□□ 0.05
CCDC40-208ENST00000572270 FSD2A1L4K1 749 aa15.35■□□□□ 0.05
CCDC40-208ENST00000572270 GPAA1O43292 621 aa15.35■□□□□ 0.05
CCDC40-208ENST00000572270 HIC1Q14526 733 aa15.35■□□□□ 0.05
CCDC40-208ENST00000572270 ASTLQ6HA08 431 aaPredicted RBP15.35■□□□□ 0.05
CCDC40-208ENST00000572270 KREMEN2Q8NCW0 462 aa15.35■□□□□ 0.05
CCDC40-208ENST00000572270 SUSD6Q92537 303 aa15.35■□□□□ 0.05
CCDC40-208ENST00000572270 APPBP2Q92624 585 aa15.35■□□□□ 0.05
CCDC40-208ENST00000572270 NACAP1Q9BZK3 213 aa15.35■□□□□ 0.05
CCDC40-208ENST00000572270 MFSD1Q9H3U5 465 aa15.35■□□□□ 0.05
CCDC40-208ENST00000572270 DDX41Q9UJV9 622 aaKnown RBP15.35■□□□□ 0.05
CCDC40-208ENST00000572270 MRVI1Q9Y6F6 885 aa15.35■□□□□ 0.05
CCDC40-208ENST00000572270 PUM1Q14671 1186 aaKnown RBP eCLIP15.34■□□□□ 0.05
CCDC40-208ENST00000572270 KCNG4Q8TDN1 519 aa15.34■□□□□ 0.05
CCDC40-208ENST00000572270 NSUN6Q8TEA1 469 aaKnown RBP15.34■□□□□ 0.05
CCDC40-208ENST00000572270 OSBP2Q969R2 916 aa15.34■□□□□ 0.05
CCDC40-208ENST00000572270 NEK1Q96PY6 1258 aa15.34■□□□□ 0.05
CCDC40-208ENST00000572270 TLE6Q9H808 572 aa15.34■□□□□ 0.05
CCDC40-208ENST00000572270 RC3H2Q9HBD1 1191 aaKnown RBP15.34■□□□□ 0.05
CCDC40-208ENST00000572270 GPCPD1Q9NPB8 672 aa15.34■□□□□ 0.05
CCDC40-208ENST00000572270 SORCS3Q9UPU3 1222 aa15.34■□□□□ 0.05
CCDC40-208ENST00000572270 FRMPD2Q68DX3 1309 aaPredicted RBP15.34■□□□□ 0.05
CCDC40-208ENST00000572270 WDR19Q8NEZ3 1342 aa15.34■□□□□ 0.05
CCDC40-208ENST00000572270 KIAA1671Q9BY89 1806 aa15.33■□□□□ 0.05
CCDC40-208ENST00000572270 KMT2BQ9UMN6 2715 aaPredicted RBP15.33■□□□□ 0.05
CCDC40-208ENST00000572270 PATL2C9JE40 543 aaKnown RBP15.33■□□□□ 0.04
CCDC40-208ENST00000572270 NMT2O60551 498 aa15.33■□□□□ 0.04
CCDC40-208ENST00000572270 PPFIA4O75335 1185 aa15.33■□□□□ 0.04
CCDC40-208ENST00000572270 ITGB1P05556 798 aa15.33■□□□□ 0.04
CCDC40-208ENST00000572270 SRGAP2BP0DMP2 458 aa15.33■□□□□ 0.04
CCDC40-208ENST00000572270 SP100P23497 879 aaPredicted RBP15.33■□□□□ 0.04
CCDC40-208ENST00000572270 DNAJB1P25685 340 aa15.33■□□□□ 0.04
CCDC40-208ENST00000572270 PPARAQ07869 468 aa15.33■□□□□ 0.04
CCDC40-208ENST00000572270 IFNL3Q8IZI9 196 aa15.33■□□□□ 0.04
CCDC40-208ENST00000572270 SPPL3Q8TCT6 385 aa15.33■□□□□ 0.04
CCDC40-208ENST00000572270 POF1BQ8WVV4 589 aa15.33■□□□□ 0.04
CCDC40-208ENST00000572270 IWS1Q96ST2 819 aa15.33■□□□□ 0.04
CCDC40-208ENST00000572270 NAPBQ9H115 298 aa15.33■□□□□ 0.04
CCDC40-208ENST00000572270 NR2E1Q9Y466 385 aa15.33■□□□□ 0.04
CCDC40-208ENST00000572270 TREHO43280 583 aa15.32■□□□□ 0.04
CCDC40-208ENST00000572270 HOXD8P13378 290 aaPredicted RBP15.32■□□□□ 0.04
CCDC40-208ENST00000572270 USH1GQ495M9 461 aa15.32■□□□□ 0.04
CCDC40-208ENST00000572270 KIAA2013Q8IYS2 634 aa15.32■□□□□ 0.04
CCDC40-208ENST00000572270 RGS22Q8NE09 1264 aa15.32■□□□□ 0.04
CCDC40-208ENST00000572270 ZNF689Q96CS4 500 aaPredicted RBP15.32■□□□□ 0.04
CCDC40-208ENST00000572270 OSBPL7Q9BZF2 842 aa15.32■□□□□ 0.04
CCDC40-208ENST00000572270 TSHZ2Q9NRE2 1034 aa15.32■□□□□ 0.04
CCDC40-208ENST00000572270 IL17RBQ9NRM6 502 aa15.32■□□□□ 0.04
CCDC40-208ENST00000572270 PCDHGC5Q9Y5F6 944 aa15.32■□□□□ 0.04
CCDC40-208ENST00000572270 RAB11FIP3O75154 756 aa15.31■□□□□ 0.04
CCDC40-208ENST00000572270 SMIM10L2AP0DMW4 78 aa15.31■□□□□ 0.04
CCDC40-208ENST00000572270 SMIM10L2BP0DMW5 78 aa15.31■□□□□ 0.04
CCDC40-208ENST00000572270 GNAT1P11488 350 aa15.31■□□□□ 0.04
CCDC40-208ENST00000572270 CLCN5P51795 746 aa15.31■□□□□ 0.04
CCDC40-208ENST00000572270 ARHGEF16Q5VV41 709 aa15.31■□□□□ 0.04
CCDC40-208ENST00000572270 KLHL23Q8NBE8 558 aa15.31■□□□□ 0.04
CCDC40-208ENST00000572270 MICAL1Q8TDZ2 1067 aa15.31■□□□□ 0.04
CCDC40-208ENST00000572270 SPATA33Q96N06 139 aa15.31■□□□□ 0.04
CCDC40-208ENST00000572270 TAAR1Q96RJ0 339 aa15.31■□□□□ 0.04
CCDC40-208ENST00000572270 RMDN3Q96TC7 470 aa15.31■□□□□ 0.04
CCDC40-208ENST00000572270 CDCA3Q99618 268 aaPredicted RBP15.31■□□□□ 0.04
CCDC40-208ENST00000572270 MRPL42Q9Y6G3 142 aaKnown RBP15.31■□□□□ 0.04
CCDC40-208ENST00000572270 EPG5Q9HCE0 2579 aa15.31■□□□□ 0.04
CCDC40-208ENST00000572270 ZFHX4Q86UP3 3567 aa15.31■□□□□ 0.04
CCDC40-208ENST00000572270 ZNF292O60281 2723 aa15.3■□□□□ 0.04
CCDC40-208ENST00000572270 RANBP6O60518 1105 aaKnown RBP15.3■□□□□ 0.04
CCDC40-208ENST00000572270 HMMRO75330 724 aa15.3■□□□□ 0.04
CCDC40-208ENST00000572270 EIF3JO75822 258 aaKnown RBP15.3■□□□□ 0.04
CCDC40-208ENST00000572270 BRD1O95696 1058 aa15.3■□□□□ 0.04
CCDC40-208ENST00000572270 ZFYP08048 801 aaPredicted RBP15.3■□□□□ 0.04
CCDC40-208ENST00000572270 CMTR2Q8IYT2 770 aaKnown RBP15.3■□□□□ 0.04
CCDC40-208ENST00000572270 KBTBD3Q8NAB2 608 aa15.3■□□□□ 0.04
CCDC40-208ENST00000572270 HINFPQ9BQA5 517 aa15.3■□□□□ 0.04
CCDC40-208ENST00000572270 MAF1Q9H063 256 aa15.3■□□□□ 0.04
CCDC40-208ENST00000572270 PLXNA4Q9HCM2 1894 aa15.3■□□□□ 0.04
CCDC40-208ENST00000572270 WDR87Q6ZQQ6 2873 aa15.29■□□□□ 0.04
CCDC40-208ENST00000572270 CCDC171Q6TFL3 1326 aa15.29■□□□□ 0.04
CCDC40-208ENST00000572270 H3BRB1 525 aa15.29■□□□□ 0.04
CCDC40-208ENST00000572270 M0R2C6 588 aa15.29■□□□□ 0.04
CCDC40-208ENST00000572270 PER2O15055 1255 aa15.29■□□□□ 0.04
CCDC40-208ENST00000572270 RNF113AO15541 343 aaKnown RBP15.29■□□□□ 0.04
CCDC40-208ENST00000572270 SORBS3O60504 671 aa15.29■□□□□ 0.04
CCDC40-208ENST00000572270 DGKIO75912 1065 aa15.29■□□□□ 0.04
CCDC40-208ENST00000572270 LMNAP02545 664 aaKnown RBP15.29■□□□□ 0.04
CCDC40-208ENST00000572270 GHRP10912 638 aa15.29■□□□□ 0.04
CCDC40-208ENST00000572270 EIF2AK2P19525 551 aaKnown RBP15.29■□□□□ 0.04
CCDC40-208ENST00000572270 HOXC8P31273 242 aa15.29■□□□□ 0.04
CCDC40-208ENST00000572270 HSDL1Q3SXM5 330 aa15.29■□□□□ 0.04
CCDC40-208ENST00000572270 MYSM1Q5VVJ2 828 aa15.29■□□□□ 0.04
CCDC40-208ENST00000572270 SYTL5Q8TDW5 730 aaPredicted RBP15.29■□□□□ 0.04
CCDC40-208ENST00000572270 ATP8B4Q8TF62 1192 aa15.29■□□□□ 0.04
CCDC40-208ENST00000572270 C16orf70Q9BSU1 422 aa15.29■□□□□ 0.04
CCDC40-208ENST00000572270 SEMA4AQ9H3S1 761 aa15.29■□□□□ 0.04
CCDC40-208ENST00000572270 RNPEPQ9H4A4 650 aa15.29■□□□□ 0.04
CCDC40-208ENST00000572270 TUT1Q9H6E5 874 aaKnown RBP15.29■□□□□ 0.04
CCDC40-208ENST00000572270 TTC3P53804 2025 aa15.28■□□□□ 0.04
CCDC40-208ENST00000572270 GGPS1O95749 300 aa15.28■□□□□ 0.04
CCDC40-208ENST00000572270 RLBP1P12271 317 aa15.28■□□□□ 0.04
CCDC40-208ENST00000572270 RBM10P98175 930 aaKnown RBP15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms