RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 DDRGK1Q96HY6 314 aa13.34□□□□□ -0.27
CDH3-208ENST00000569036 SH2B1Q9NRF2 756 aaPredicted RBP13.34□□□□□ -0.27
CDH3-208ENST00000569036 MTMR4Q9NYA4 1195 aa13.34□□□□□ -0.27
CDH3-208ENST00000569036 MRPL42Q9Y6G3 142 aaKnown RBP13.34□□□□□ -0.27
CDH3-208ENST00000569036 KIAA1217Q5T5P2 1943 aa13.34□□□□□ -0.27
CDH3-208ENST00000569036 TTC3P53804 2025 aa13.34□□□□□ -0.27
CDH3-208ENST00000569036 SURF6O75683 361 aaKnown RBP13.33□□□□□ -0.28
CDH3-208ENST00000569036 TTLL1O95922 423 aa13.33□□□□□ -0.28
CDH3-208ENST00000569036 ICAM1P05362 532 aa13.33□□□□□ -0.28
CDH3-208ENST00000569036 ASGR2P07307 311 aa13.33□□□□□ -0.28
CDH3-208ENST00000569036 CTSHP09668 335 aa13.33□□□□□ -0.28
CDH3-208ENST00000569036 CALML3P27482 149 aa13.33□□□□□ -0.28
CDH3-208ENST00000569036 LY6KQ17RY6 165 aa13.33□□□□□ -0.28
CDH3-208ENST00000569036 DHX37Q8IY37 1157 aaKnown RBP13.33□□□□□ -0.28
CDH3-208ENST00000569036 GMCL1Q96IK5 515 aa13.33□□□□□ -0.28
CDH3-208ENST00000569036 APOL5Q9BWW9 433 aa13.33□□□□□ -0.28
CDH3-208ENST00000569036 MKNK2Q9HBH9 465 aa13.33□□□□□ -0.28
CDH3-208ENST00000569036 ARPP21Q9UBL0 812 aaPredicted RBP13.33□□□□□ -0.28
CDH3-208ENST00000569036 PRR12Q9ULL5 1215 aa13.33□□□□□ -0.28
CDH3-208ENST00000569036 PLA2G6O60733 806 aa13.32□□□□□ -0.28
CDH3-208ENST00000569036 DUSP6Q16828 381 aa13.32□□□□□ -0.28
CDH3-208ENST00000569036 ANKRD54Q6NXT1 300 aa13.32□□□□□ -0.28
CDH3-208ENST00000569036 SYCE2Q6PIF2 218 aa13.32□□□□□ -0.28
CDH3-208ENST00000569036 SSH3Q8TE77 659 aa13.32□□□□□ -0.28
CDH3-208ENST00000569036 MPHOSPH6Q99547 160 aaKnown RBP13.32□□□□□ -0.28
CDH3-208ENST00000569036 RTP3Q9BQQ7 232 aa13.32□□□□□ -0.28
CDH3-208ENST00000569036 CDH22Q9UJ99 828 aa13.32□□□□□ -0.28
CDH3-208ENST00000569036 SLC4A4Q9Y6R1 1079 aa13.32□□□□□ -0.28
CDH3-208ENST00000569036 MYH7P12883 1935 aa13.31□□□□□ -0.28
CDH3-208ENST00000569036 FSD2A1L4K1 749 aa13.31□□□□□ -0.28
CDH3-208ENST00000569036 DCDC2BA2VCK2 349 aa13.31□□□□□ -0.28
CDH3-208ENST00000569036 GOLIM4O00461 696 aa13.31□□□□□ -0.28
CDH3-208ENST00000569036 TECP42680 631 aa13.31□□□□□ -0.28
CDH3-208ENST00000569036 SLC1A4P43007 532 aa13.31□□□□□ -0.28
CDH3-208ENST00000569036 ZC3H14Q6PJT7 736 aaKnown RBP13.31□□□□□ -0.28
CDH3-208ENST00000569036 KCTD1Q719H9 257 aa13.31□□□□□ -0.28
CDH3-208ENST00000569036 CRIPAKQ8N1N5 446 aa13.31□□□□□ -0.28
CDH3-208ENST00000569036 RIN2Q8WYP3 895 aaPredicted RBP13.31□□□□□ -0.28
CDH3-208ENST00000569036 CDCA3Q99618 268 aaPredicted RBP13.31□□□□□ -0.28
CDH3-208ENST00000569036 DGKIO75912 1065 aa13.3□□□□□ -0.28
CDH3-208ENST00000569036 MCCP23508 829 aa13.3□□□□□ -0.28
CDH3-208ENST00000569036 ADD2P35612 726 aa13.3□□□□□ -0.28
CDH3-208ENST00000569036 KCNC3Q14003 757 aa13.3□□□□□ -0.28
CDH3-208ENST00000569036 TMEM184AQ6ZMB5 413 aa13.3□□□□□ -0.28
CDH3-208ENST00000569036 RNF207Q6ZRF8 634 aa13.3□□□□□ -0.28
CDH3-208ENST00000569036 RASGRP2Q7LDG7 609 aa13.3□□□□□ -0.28
CDH3-208ENST00000569036 SUMF1Q8NBK3 374 aa13.3□□□□□ -0.28
CDH3-208ENST00000569036 DNERQ8NFT8 737 aa13.3□□□□□ -0.28
CDH3-208ENST00000569036 BCL11AQ9H165 835 aa13.3□□□□□ -0.28
CDH3-208ENST00000569036 POMKQ9H5K3 350 aa13.3□□□□□ -0.28
CDH3-208ENST00000569036 CDV3Q9UKY7 258 aaKnown RBP13.3□□□□□ -0.28
CDH3-208ENST00000569036 PLIN4Q96Q06 1357 aa13.3□□□□□ -0.28
CDH3-208ENST00000569036 CEP295Q9C0D2 2601 aa13.29□□□□□ -0.28
CDH3-208ENST00000569036 CAND2O75155 1236 aa13.29□□□□□ -0.28
CDH3-208ENST00000569036 SRGAP2BP0DMP2 458 aa13.29□□□□□ -0.28
CDH3-208ENST00000569036 RPS6P62753 249 aaKnown RBP13.29□□□□□ -0.28
CDH3-208ENST00000569036 COL9A3Q14050 684 aaPredicted RBP13.29□□□□□ -0.28
CDH3-208ENST00000569036 SEPT14Q6ZU15 432 aa13.29□□□□□ -0.28
CDH3-208ENST00000569036 CLEC4DQ8WXI8 215 aa13.29□□□□□ -0.28
CDH3-208ENST00000569036 ATP6V0A1Q93050 837 aa13.29□□□□□ -0.28
CDH3-208ENST00000569036 DNAJC2Q99543 621 aaKnown RBP13.29□□□□□ -0.28
CDH3-208ENST00000569036 RTKNQ9BST9 563 aa13.29□□□□□ -0.28
CDH3-208ENST00000569036 RANBP17Q9H2T7 1088 aaKnown RBP13.29□□□□□ -0.28
CDH3-208ENST00000569036 MRS2Q9HD23 443 aa13.29□□□□□ -0.28
CDH3-208ENST00000569036 ERVK-5Q9HDB9 667 aa13.29□□□□□ -0.28
CDH3-208ENST00000569036 NOP58Q9Y2X3 529 aaKnown RBP13.29□□□□□ -0.28
CDH3-208ENST00000569036 PRDM1O75626 825 aa13.28□□□□□ -0.28
CDH3-208ENST00000569036 BCAR3O75815 825 aa13.28□□□□□ -0.28
CDH3-208ENST00000569036 CHGBP05060 677 aa13.28□□□□□ -0.28
CDH3-208ENST00000569036 HOXC8P31273 242 aa13.28□□□□□ -0.28
CDH3-208ENST00000569036 DMWDQ09019 674 aa13.28□□□□□ -0.28
CDH3-208ENST00000569036 SBK1Q52WX2 424 aa13.28□□□□□ -0.28
CDH3-208ENST00000569036 AACSQ86V21 672 aa13.28□□□□□ -0.28
CDH3-208ENST00000569036 CMTR2Q8IYT2 770 aaKnown RBP13.28□□□□□ -0.28
CDH3-208ENST00000569036 PPTC7Q8NI37 304 aa13.28□□□□□ -0.28
CDH3-208ENST00000569036 MICAL1Q8TDZ2 1067 aa13.28□□□□□ -0.28
CDH3-208ENST00000569036 EMID1Q96A84 441 aaPredicted RBP13.28□□□□□ -0.28
CDH3-208ENST00000569036 LIMD1Q9UGP4 676 aa13.28□□□□□ -0.28
CDH3-208ENST00000569036 FLNBO75369 2602 aaKnown RBP13.28□□□□□ -0.28
CDH3-208ENST00000569036 GCN1Q92616 2671 aaKnown RBP13.28□□□□□ -0.28
CDH3-208ENST00000569036 C17orf102A2RUQ5 167 aa13.27□□□□□ -0.29
CDH3-208ENST00000569036 PRR5-ARHGAP8B1AHC4 643 aa13.27□□□□□ -0.29
CDH3-208ENST00000569036 B4DLN1 442 aa13.27□□□□□ -0.29
CDH3-208ENST00000569036 TREHO43280 583 aa13.27□□□□□ -0.29
CDH3-208ENST00000569036 PPFIA3O75145 1194 aa13.27□□□□□ -0.29
CDH3-208ENST00000569036 SP9P0CG40 484 aa13.27□□□□□ -0.29
CDH3-208ENST00000569036 HOXD8P13378 290 aaPredicted RBP13.27□□□□□ -0.29
CDH3-208ENST00000569036 MRPL12P52815 198 aaKnown RBP13.27□□□□□ -0.29
CDH3-208ENST00000569036 ARHGAP8P85298 464 aa13.27□□□□□ -0.29
CDH3-208ENST00000569036 RCSD1Q6JBY9 416 aa13.27□□□□□ -0.29
CDH3-208ENST00000569036 LLGL2Q6P1M3 1020 aa13.27□□□□□ -0.29
CDH3-208ENST00000569036 ZDHHC14Q8IZN3 488 aa13.27□□□□□ -0.29
CDH3-208ENST00000569036 ZNF444Q8N0Y2 327 aaPredicted RBP13.27□□□□□ -0.29
CDH3-208ENST00000569036 SIX5Q8N196 739 aa13.27□□□□□ -0.29
CDH3-208ENST00000569036 TDRD5Q8NAT2 981 aaKnown RBP13.27□□□□□ -0.29
CDH3-208ENST00000569036 MINDY4BA8MYZ0 360 aa13.26□□□□□ -0.29
CDH3-208ENST00000569036 ENPP3O14638 875 aa13.26□□□□□ -0.29
CDH3-208ENST00000569036 HOXB8P17481 243 aaPredicted RBP13.26□□□□□ -0.29
CDH3-208ENST00000569036 LMNB2Q03252 620 aa13.26□□□□□ -0.29
CDH3-208ENST00000569036 PAN2Q504Q3 1202 aaKnown RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms