RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 HEATR3Q7Z4Q2 680 aa16.01■□□□□ 0.15
CLN3-235ENST00000568497 TMTC2Q8N394 836 aa16.01■□□□□ 0.15
CLN3-235ENST00000568497 NECAB1Q8N987 351 aa16.01■□□□□ 0.15
CLN3-235ENST00000568497 IL31RAQ8NI17 732 aa16.01■□□□□ 0.15
CLN3-235ENST00000568497 RRP36Q96EU6 259 aaKnown RBP16.01■□□□□ 0.15
CLN3-235ENST00000568497 MTA3Q9BTC8 594 aa16.01■□□□□ 0.15
CLN3-235ENST00000568497 SUGCTQ9HAC7 445 aa16.01■□□□□ 0.15
CLN3-235ENST00000568497 PTPRSQ13332 1948 aa16■□□□□ 0.15
CLN3-235ENST00000568497 POTEB3A0JP26 581 aa16■□□□□ 0.15
CLN3-235ENST00000568497 BAIAP3O94812 1187 aa16■□□□□ 0.15
CLN3-235ENST00000568497 MYL3P08590 195 aa16■□□□□ 0.15
CLN3-235ENST00000568497 IQCF3P0C7M6 154 aa16■□□□□ 0.15
CLN3-235ENST00000568497 ALDH5A1P51649 535 aaPredicted RBP16■□□□□ 0.15
CLN3-235ENST00000568497 AK2P54819 239 aa16■□□□□ 0.15
CLN3-235ENST00000568497 WWC2Q6AWC2 1192 aa16■□□□□ 0.15
CLN3-235ENST00000568497 IQSEC1Q6DN90 963 aa16■□□□□ 0.15
CLN3-235ENST00000568497 USP17L6PQ6QN14 398 aa16■□□□□ 0.15
CLN3-235ENST00000568497 POTEBQ6S5H4 581 aa16■□□□□ 0.15
CLN3-235ENST00000568497 PGBD1Q96JS3 809 aa16■□□□□ 0.15
CLN3-235ENST00000568497 TGS1Q96RS0 853 aaKnown RBP16■□□□□ 0.15
CLN3-235ENST00000568497 SPZ1Q9BXG8 430 aa16■□□□□ 0.15
CLN3-235ENST00000568497 TPCN1Q9ULQ1 816 aa16■□□□□ 0.15
CLN3-235ENST00000568497 NOD1Q9Y239 953 aa16■□□□□ 0.15
CLN3-235ENST00000568497 MRPL11Q9Y3B7 192 aaKnown RBP16■□□□□ 0.15
CLN3-235ENST00000568497 CACNA1AO00555 2505 aa16■□□□□ 0.15
CLN3-235ENST00000568497 CALM1P0DP23 149 aa15.99■□□□□ 0.15
CLN3-235ENST00000568497 CALM2P0DP24 149 aa15.99■□□□□ 0.15
CLN3-235ENST00000568497 CALM3P0DP25 149 aa15.99■□□□□ 0.15
CLN3-235ENST00000568497 TET1Q8NFU7 2136 aa15.99■□□□□ 0.15
CLN3-235ENST00000568497 PPP1R13LQ8WUF5 828 aa15.99■□□□□ 0.15
CLN3-235ENST00000568497 COPS5Q92905 334 aa15.99■□□□□ 0.15
CLN3-235ENST00000568497 AIFM3Q96NN9 605 aa15.99■□□□□ 0.15
CLN3-235ENST00000568497 KIF2CQ99661 725 aa15.99■□□□□ 0.15
CLN3-235ENST00000568497 AGXT2Q9BYV1 514 aa15.99■□□□□ 0.15
CLN3-235ENST00000568497 TM6SF1Q9BZW5 370 aa15.99■□□□□ 0.15
CLN3-235ENST00000568497 POLR3EQ9NVU0 708 aa15.99■□□□□ 0.15
CLN3-235ENST00000568497 FAM50BQ9Y247 325 aa15.99■□□□□ 0.15
CLN3-235ENST00000568497 ZDBF2Q9HCK1 2354 aa15.98■□□□□ 0.15
CLN3-235ENST00000568497 PITPNM1O00562 1244 aa15.98■□□□□ 0.15
CLN3-235ENST00000568497 FOSBP53539 338 aa15.98■□□□□ 0.15
CLN3-235ENST00000568497 WDR5P61964 334 aaKnown RBP15.98■□□□□ 0.15
CLN3-235ENST00000568497 FOXK2Q01167 660 aa15.98■□□□□ 0.15
CLN3-235ENST00000568497 BFSP2Q13515 415 aa15.98■□□□□ 0.15
CLN3-235ENST00000568497 TAPT1Q6NXT6 567 aa15.98■□□□□ 0.15
CLN3-235ENST00000568497 MAP3K14Q99558 947 aa15.98■□□□□ 0.15
CLN3-235ENST00000568497 SIP14410 1827 aa15.98■□□□□ 0.15
CLN3-235ENST00000568497 MYCLP12524 364 aaPredicted RBP15.97■□□□□ 0.15
CLN3-235ENST00000568497 GNAQP50148 359 aa15.97■□□□□ 0.15
CLN3-235ENST00000568497 NEK4P51957 841 aa15.97■□□□□ 0.15
CLN3-235ENST00000568497 PTPN5P54829 565 aa15.97■□□□□ 0.15
CLN3-235ENST00000568497 CHMP4BP1P59074 171 aa15.97■□□□□ 0.15
CLN3-235ENST00000568497 ERVK-21P61565 698 aa15.97■□□□□ 0.15
CLN3-235ENST00000568497 DEFB103AP81534 67 aa15.97■□□□□ 0.15
CLN3-235ENST00000568497 ZP2Q05996 745 aa15.97■□□□□ 0.15
CLN3-235ENST00000568497 FAM117BQ6P1L5 589 aa15.97■□□□□ 0.15
CLN3-235ENST00000568497 PRSS33Q8NF86 280 aa15.97■□□□□ 0.15
CLN3-235ENST00000568497 SLC26A6Q9BXS9 759 aa15.97■□□□□ 0.15
CLN3-235ENST00000568497 C22orf23Q9BZE7 217 aa15.97■□□□□ 0.15
CLN3-235ENST00000568497 TMEM260Q9NX78 707 aa15.97■□□□□ 0.15
CLN3-235ENST00000568497 SEC63Q9UGP8 760 aaKnown RBP15.97■□□□□ 0.15
CLN3-235ENST00000568497 EPB41L2O43491 1005 aaKnown RBP15.96■□□□□ 0.15
CLN3-235ENST00000568497 GFRA3O60609 400 aa15.96■□□□□ 0.15
CLN3-235ENST00000568497 ARIH2O95376 493 aa15.96■□□□□ 0.15
CLN3-235ENST00000568497 PURAQ00577 322 aaKnown RBP15.96■□□□□ 0.15
CLN3-235ENST00000568497 ST3GAL1Q11201 340 aa15.96■□□□□ 0.15
CLN3-235ENST00000568497 SCRN1Q12765 414 aa15.96■□□□□ 0.15
CLN3-235ENST00000568497 NTRK3Q16288 839 aa15.96■□□□□ 0.15
CLN3-235ENST00000568497 SEPT14Q6ZU15 432 aa15.96■□□□□ 0.15
CLN3-235ENST00000568497 FBXO22Q8NEZ5 403 aa15.96■□□□□ 0.15
CLN3-235ENST00000568497 NEK9Q8TD19 979 aa15.96■□□□□ 0.15
CLN3-235ENST00000568497 RMDN3Q96TC7 470 aa15.96■□□□□ 0.15
CLN3-235ENST00000568497 MTG1Q9BT17 334 aaPredicted RBP15.96■□□□□ 0.15
CLN3-235ENST00000568497 GJB4Q9NTQ9 266 aa15.96■□□□□ 0.15
CLN3-235ENST00000568497 RBM28Q9NW13 759 aaKnown RBP15.96■□□□□ 0.15
CLN3-235ENST00000568497 PRKAG3Q9UGI9 489 aa15.96■□□□□ 0.15
CLN3-235ENST00000568497 LINC01553A4QN01 128 aa15.95■□□□□ 0.14
CLN3-235ENST00000568497 GCOM1H8Y6P7 765 aaPredicted RBP15.95■□□□□ 0.14
CLN3-235ENST00000568497 STXBP3O00186 592 aa15.95■□□□□ 0.14
CLN3-235ENST00000568497 POLR2MP0CAP2 368 aa15.95■□□□□ 0.14
CLN3-235ENST00000568497 CPT1AP50416 773 aa15.95■□□□□ 0.14
CLN3-235ENST00000568497 HSD17B4P51659 736 aa15.95■□□□□ 0.14
CLN3-235ENST00000568497 PDE4DQ08499 809 aa15.95■□□□□ 0.14
CLN3-235ENST00000568497 PKN1Q16512 942 aa15.95■□□□□ 0.14
CLN3-235ENST00000568497 ME3Q16798 604 aa15.95■□□□□ 0.14
CLN3-235ENST00000568497 NBPF20Q3BBV1 942 aa15.95■□□□□ 0.14
CLN3-235ENST00000568497 ARHGEF16Q5VV41 709 aa15.95■□□□□ 0.14
CLN3-235ENST00000568497 RASGRP4Q8TDF6 673 aa15.95■□□□□ 0.14
CLN3-235ENST00000568497 RAD9AQ99638 391 aa15.95■□□□□ 0.14
CLN3-235ENST00000568497 LZTS2Q9BRK4 669 aa15.95■□□□□ 0.14
CLN3-235ENST00000568497 BCAS3Q9H6U6 928 aa15.95■□□□□ 0.14
CLN3-235ENST00000568497 VTA1Q9NP79 307 aa15.95■□□□□ 0.14
CLN3-235ENST00000568497 PXMP2Q9NR77 195 aa15.95■□□□□ 0.14
CLN3-235ENST00000568497 MUTYHQ9UIF7 546 aa15.95■□□□□ 0.14
CLN3-235ENST00000568497 MEIS2O14770 477 aa15.94■□□□□ 0.14
CLN3-235ENST00000568497 GJB5O95377 273 aa15.94■□□□□ 0.14
CLN3-235ENST00000568497 IRS1P35568 1242 aa15.94■□□□□ 0.14
CLN3-235ENST00000568497 NAPAP54920 295 aa15.94■□□□□ 0.14
CLN3-235ENST00000568497 ANAPC15P60006 121 aa15.94■□□□□ 0.14
CLN3-235ENST00000568497 PTPROQ16827 1216 aa15.94■□□□□ 0.14
CLN3-235ENST00000568497 DUSP28Q4G0W2 176 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms