RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 PCNX4Q63HM2 1172 aa18.53■□□□□ 0.56
CLN3-229ENST00000567963 METTL7BQ6UX53 244 aa18.53■□□□□ 0.56
CLN3-229ENST00000567963 CYFIP1Q7L576 1253 aa18.53■□□□□ 0.56
CLN3-229ENST00000567963 THEGQ9P2T0 379 aa18.53■□□□□ 0.56
CLN3-229ENST00000567963 ABHD14A-ACY1A0A1B0GW23 586 aa18.52■□□□□ 0.56
CLN3-229ENST00000567963 RFXAPO00287 272 aa18.52■□□□□ 0.56
CLN3-229ENST00000567963 TLL1O43897 1013 aa18.52■□□□□ 0.56
CLN3-229ENST00000567963 ARHGEF15O94989 841 aa18.52■□□□□ 0.56
CLN3-229ENST00000567963 POU3F3P20264 500 aaPredicted RBP18.52■□□□□ 0.56
CLN3-229ENST00000567963 HOXC8P31273 242 aa18.52■□□□□ 0.56
CLN3-229ENST00000567963 TCTN1Q2MV58 587 aa18.52■□□□□ 0.56
CLN3-229ENST00000567963 XRRA1Q6P2D8 792 aa18.52■□□□□ 0.56
CLN3-229ENST00000567963 SERINC5Q86VE9 423 aa18.52■□□□□ 0.56
CLN3-229ENST00000567963 ANO2Q9NQ90 1003 aa18.52■□□□□ 0.56
CLN3-229ENST00000567963 DOCK5Q9H7D0 1870 aa18.52■□□□□ 0.56
CLN3-229ENST00000567963 C17orf102A2RUQ5 167 aa18.52■□□□□ 0.55
CLN3-229ENST00000567963 EPOPA6NHQ4 379 aa18.52■□□□□ 0.55
CLN3-229ENST00000567963 DEFB103AP81534 67 aa18.52■□□□□ 0.55
CLN3-229ENST00000567963 IKBKEQ14164 716 aa18.52■□□□□ 0.55
CLN3-229ENST00000567963 MBTPS1Q14703 1052 aa18.52■□□□□ 0.55
CLN3-229ENST00000567963 TMCO2Q7Z6W1 182 aaPredicted RBP18.52■□□□□ 0.55
CLN3-229ENST00000567963 ATP6V0A1Q93050 837 aa18.52■□□□□ 0.55
CLN3-229ENST00000567963 ASB2Q96Q27 587 aa18.52■□□□□ 0.55
CLN3-229ENST00000567963 GPR20Q99678 358 aa18.52■□□□□ 0.55
CLN3-229ENST00000567963 SENP7Q9BQF6 1050 aa18.52■□□□□ 0.55
CLN3-229ENST00000567963 RNPEPQ9H4A4 650 aa18.52■□□□□ 0.55
CLN3-229ENST00000567963 PSTPIP2Q9H939 334 aa18.52■□□□□ 0.55
CLN3-229ENST00000567963 SLC12A7Q9Y666 1083 aa18.52■□□□□ 0.55
CLN3-229ENST00000567963 EFCAB14O75071 495 aa18.51■□□□□ 0.55
CLN3-229ENST00000567963 SMIM10L2AP0DMW4 78 aa18.51■□□□□ 0.55
CLN3-229ENST00000567963 SMIM10L2BP0DMW5 78 aa18.51■□□□□ 0.55
CLN3-229ENST00000567963 THPOP40225 353 aa18.51■□□□□ 0.55
CLN3-229ENST00000567963 BMP2KLQ5H9B9 411 aa18.51■□□□□ 0.55
CLN3-229ENST00000567963 FANCBQ8NB91 859 aa18.51■□□□□ 0.55
CLN3-229ENST00000567963 ARNTL2Q8WYA1 636 aa18.51■□□□□ 0.55
CLN3-229ENST00000567963 ZBED2Q9BTP6 218 aa18.51■□□□□ 0.55
CLN3-229ENST00000567963 LRRC2Q9BYS8 371 aa18.51■□□□□ 0.55
CLN3-229ENST00000567963 MTCH2Q9Y6C9 303 aa18.51■□□□□ 0.55
CLN3-229ENST00000567963 EMSYQ7Z589 1322 aa18.5■□□□□ 0.55
CLN3-229ENST00000567963 RSPH10B2B2RC85 870 aa18.5■□□□□ 0.55
CLN3-229ENST00000567963 RBAK-RBAKDNI3L0D1 243 aa18.5■□□□□ 0.55
CLN3-229ENST00000567963 TREHO43280 583 aa18.5■□□□□ 0.55
CLN3-229ENST00000567963 RSPH10BP0C881 870 aa18.5■□□□□ 0.55
CLN3-229ENST00000567963 MRPS5P82675 430 aaKnown RBP18.5■□□□□ 0.55
CLN3-229ENST00000567963 NLRX1Q86UT6 975 aa18.5■□□□□ 0.55
CLN3-229ENST00000567963 SGMS1Q86VZ5 419 aa18.5■□□□□ 0.55
CLN3-229ENST00000567963 RAB11FIP4Q86YS3 637 aa18.5■□□□□ 0.55
CLN3-229ENST00000567963 MICALL1Q8N3F8 863 aa18.5■□□□□ 0.55
CLN3-229ENST00000567963 CCDC82Q8N4S0 544 aa18.5■□□□□ 0.55
CLN3-229ENST00000567963 TELO2Q9Y4R8 837 aa18.5■□□□□ 0.55
CLN3-229ENST00000567963 hCG_1642624A0A1W2PR95 340 aa18.49■□□□□ 0.55
CLN3-229ENST00000567963 LCHNA4D1U4 455 aa18.49■□□□□ 0.55
CLN3-229ENST00000567963 GTPBP6O43824 516 aaPredicted RBP18.49■□□□□ 0.55
CLN3-229ENST00000567963 LGR5O75473 907 aa18.49■□□□□ 0.55
CLN3-229ENST00000567963 GJB5O95377 273 aa18.49■□□□□ 0.55
CLN3-229ENST00000567963 SKAP1Q86WV1 359 aa18.49■□□□□ 0.55
CLN3-229ENST00000567963 RAD9AQ99638 391 aa18.49■□□□□ 0.55
CLN3-229ENST00000567963 TSPYL2Q9H2G4 693 aaPredicted RBP18.49■□□□□ 0.55
CLN3-229ENST00000567963 RNF20Q5VTR2 975 aa18.48■□□□□ 0.55
CLN3-229ENST00000567963 TMTC3Q6ZXV5 915 aa18.48■□□□□ 0.55
CLN3-229ENST00000567963 SPRED2Q7Z698 418 aa18.48■□□□□ 0.55
CLN3-229ENST00000567963 GIMAP8Q8ND71 665 aaPredicted RBP18.48■□□□□ 0.55
CLN3-229ENST00000567963 DBF4BQ8NFT6 615 aa18.48■□□□□ 0.55
CLN3-229ENST00000567963 GPRASP2Q96D09 838 aa18.48■□□□□ 0.55
CLN3-229ENST00000567963 SETD4Q9NVD3 440 aa18.48■□□□□ 0.55
CLN3-229ENST00000567963 PRRC2BQ5JSZ5 2229 aaKnown RBP18.48■□□□□ 0.55
CLN3-229ENST00000567963 ATP9AO75110 1047 aa18.47■□□□□ 0.55
CLN3-229ENST00000567963 GNAT1P11488 350 aa18.47■□□□□ 0.55
CLN3-229ENST00000567963 SP4Q02446 784 aa18.47■□□□□ 0.55
CLN3-229ENST00000567963 UTP14CQ5TAP6 766 aaKnown RBP18.47■□□□□ 0.55
CLN3-229ENST00000567963 CENPQQ7L2Z9 268 aaPredicted RBP18.47■□□□□ 0.55
CLN3-229ENST00000567963 MICU3Q86XE3 530 aa18.47■□□□□ 0.55
CLN3-229ENST00000567963 TRIM50Q86XT4 487 aa18.47■□□□□ 0.55
CLN3-229ENST00000567963 NEK1Q96PY6 1258 aa18.47■□□□□ 0.55
CLN3-229ENST00000567963 ZNF215Q9UL58 517 aaPredicted RBP18.47■□□□□ 0.55
CLN3-229ENST00000567963 TTC28Q96AY4 2481 aa18.47■□□□□ 0.55
CLN3-229ENST00000567963 CAND2O75155 1236 aa18.46■□□□□ 0.55
CLN3-229ENST00000567963 ITGB5P18084 799 aa18.46■□□□□ 0.55
CLN3-229ENST00000567963 ADAM17P78536 824 aa18.46■□□□□ 0.55
CLN3-229ENST00000567963 EXOSC10Q01780 885 aaKnown RBP18.46■□□□□ 0.55
CLN3-229ENST00000567963 MKRN4PQ13434 485 aaPredicted RBP18.46■□□□□ 0.55
CLN3-229ENST00000567963 UBE2SQ16763 222 aa18.46■□□□□ 0.55
CLN3-229ENST00000567963 PLEKHG4Q58EX7 1191 aa18.46■□□□□ 0.55
CLN3-229ENST00000567963 KRT40Q6A162 431 aa18.46■□□□□ 0.55
CLN3-229ENST00000567963 SYNE3Q6ZMZ3 975 aa18.46■□□□□ 0.55
CLN3-229ENST00000567963 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.46■□□□□ 0.55
CLN3-229ENST00000567963 CDHR1Q96JP9 859 aa18.46■□□□□ 0.55
CLN3-229ENST00000567963 SPDYE3A6NKU9 549 aa18.46■□□□□ 0.54
CLN3-229ENST00000567963 TNFRSF10AO00220 468 aa18.46■□□□□ 0.54
CLN3-229ENST00000567963 LPXNO60711 386 aa18.46■□□□□ 0.54
CLN3-229ENST00000567963 KCNA2P16389 499 aa18.46■□□□□ 0.54
CLN3-229ENST00000567963 GRB10Q13322 594 aa18.46■□□□□ 0.54
CLN3-229ENST00000567963 TSGA10IPQ3SY00 556 aa18.46■□□□□ 0.54
CLN3-229ENST00000567963 APOA5Q6Q788 366 aa18.46■□□□□ 0.54
CLN3-229ENST00000567963 PCDHA6Q9UN73 950 aa18.46■□□□□ 0.54
CLN3-229ENST00000567963 PCDHA8Q9Y5H6 950 aa18.46■□□□□ 0.54
CLN3-229ENST00000567963 UBIAD1Q9Y5Z9 338 aa18.46■□□□□ 0.54
CLN3-229ENST00000567963 MAFGO15525 162 aa18.45■□□□□ 0.54
CLN3-229ENST00000567963 TCF7P36402 384 aaPredicted RBP18.45■□□□□ 0.54
CLN3-229ENST00000567963 SKIV2LQ15477 1246 aaKnown RBP18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms