RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 PTK7Q13308 1070 aa23.77■■□□□ 1.4
CLN3-219ENST00000565778 AFAP1L1Q8TED9 768 aa23.77■■□□□ 1.4
CLN3-219ENST00000565778 GPRASP2Q96D09 838 aa23.77■■□□□ 1.4
CLN3-219ENST00000565778 CDHR1Q96JP9 859 aa23.77■■□□□ 1.4
CLN3-219ENST00000565778 GPR20Q99678 358 aa23.77■■□□□ 1.4
CLN3-219ENST00000565778 SMCO2A6NFE2 343 aa23.76■■□□□ 1.39
CLN3-219ENST00000565778 LGALS2P05162 132 aa23.76■■□□□ 1.39
CLN3-219ENST00000565778 SELPP16109 830 aa23.76■■□□□ 1.39
CLN3-219ENST00000565778 GRIN2CQ14957 1233 aa23.76■■□□□ 1.39
CLN3-219ENST00000565778 RAB30Q15771 203 aa23.76■■□□□ 1.39
CLN3-219ENST00000565778 UTP14CQ5TAP6 766 aaKnown RBP23.76■■□□□ 1.39
CLN3-219ENST00000565778 DHX38Q92620 1227 aaKnown RBP23.76■■□□□ 1.39
CLN3-219ENST00000565778 RIC8AQ9NPQ8 531 aa23.76■■□□□ 1.39
CLN3-219ENST00000565778 hCG_1984214I3L0E3 225 aa23.75■■□□□ 1.39
CLN3-219ENST00000565778 STXBP3O00186 592 aa23.75■■□□□ 1.39
CLN3-219ENST00000565778 ATP9AO75110 1047 aa23.75■■□□□ 1.39
CLN3-219ENST00000565778 CKBP12277 381 aa23.75■■□□□ 1.39
CLN3-219ENST00000565778 ITGB5P18084 799 aa23.75■■□□□ 1.39
CLN3-219ENST00000565778 ADCY7P51828 1080 aa23.75■■□□□ 1.39
CLN3-219ENST00000565778 MTMR1Q13613 665 aa23.75■■□□□ 1.39
CLN3-219ENST00000565778 TYW1BQ6NUM6 668 aa23.75■■□□□ 1.39
CLN3-219ENST00000565778 PPP1R18Q6NYC8 613 aa23.75■■□□□ 1.39
CLN3-219ENST00000565778 LRRC8DQ7L1W4 858 aa23.75■■□□□ 1.39
CLN3-219ENST00000565778 ZNF713Q8N859 430 aaPredicted RBP23.75■■□□□ 1.39
CLN3-219ENST00000565778 BARHL2Q9NY43 387 aa23.75■■□□□ 1.39
CLN3-219ENST00000565778 UBIAD1Q9Y5Z9 338 aa23.75■■□□□ 1.39
CLN3-219ENST00000565778 COL6A3P12111 3177 aa23.74■■□□□ 1.39
CLN3-219ENST00000565778 C17orf102A2RUQ5 167 aa23.74■■□□□ 1.39
CLN3-219ENST00000565778 MAFGO15525 162 aa23.74■■□□□ 1.39
CLN3-219ENST00000565778 FOSP01100 380 aaPredicted RBP23.74■■□□□ 1.39
CLN3-219ENST00000565778 ATP2A2P16615 1042 aaKnown RBP23.74■■□□□ 1.39
CLN3-219ENST00000565778 RABGGTBP53611 331 aa23.74■■□□□ 1.39
CLN3-219ENST00000565778 SLC28A3Q9HAS3 691 aa23.74■■□□□ 1.39
CLN3-219ENST00000565778 JADE2Q9NQC1 790 aa23.74■■□□□ 1.39
CLN3-219ENST00000565778 PKD2L1Q9P0L9 805 aa23.74■■□□□ 1.39
CLN3-219ENST00000565778 TELO2Q9Y4R8 837 aa23.74■■□□□ 1.39
CLN3-219ENST00000565778 EPB41L2O43491 1005 aaKnown RBP23.73■■□□□ 1.39
CLN3-219ENST00000565778 PARNO95453 639 aaKnown RBP23.73■■□□□ 1.39
CLN3-219ENST00000565778 SMIM10L2AP0DMW4 78 aa23.73■■□□□ 1.39
CLN3-219ENST00000565778 SMIM10L2BP0DMW5 78 aa23.73■■□□□ 1.39
CLN3-219ENST00000565778 FOSL2P15408 326 aa23.73■■□□□ 1.39
CLN3-219ENST00000565778 HIC1Q14526 733 aa23.73■■□□□ 1.39
CLN3-219ENST00000565778 TEX2Q8IWB9 1127 aa23.73■■□□□ 1.39
CLN3-219ENST00000565778 FBXL16Q8N461 479 aa23.73■■□□□ 1.39
CLN3-219ENST00000565778 ATP6V0A1Q93050 837 aa23.73■■□□□ 1.39
CLN3-219ENST00000565778 GLT8D2Q9H1C3 349 aa23.73■■□□□ 1.39
CLN3-219ENST00000565778 NKX2-4Q9H2Z4 354 aa23.73■■□□□ 1.39
CLN3-219ENST00000565778 RNPEPQ9H4A4 650 aa23.73■■□□□ 1.39
CLN3-219ENST00000565778 KCNA2P16389 499 aa23.72■■□□□ 1.39
CLN3-219ENST00000565778 RBL2Q08999 1139 aa23.72■■□□□ 1.39
CLN3-219ENST00000565778 PFKFB3Q16875 520 aaPredicted RBP23.72■■□□□ 1.39
CLN3-219ENST00000565778 SEPT1Q8WYJ6 367 aa23.72■■□□□ 1.39
CLN3-219ENST00000565778 PGBD1Q96JS3 809 aa23.72■■□□□ 1.39
CLN3-219ENST00000565778 ZNF215Q9UL58 517 aaPredicted RBP23.72■■□□□ 1.39
CLN3-219ENST00000565778 GNAT1P11488 350 aa23.71■■□□□ 1.39
CLN3-219ENST00000565778 SCG2P13521 617 aa23.71■■□□□ 1.39
CLN3-219ENST00000565778 AKAP17AQ02040 695 aaKnown RBP23.71■■□□□ 1.39
CLN3-219ENST00000565778 GPNMBQ14956 572 aa23.71■■□□□ 1.39
CLN3-219ENST00000565778 ZNF618Q5T7W0 954 aa23.71■■□□□ 1.39
CLN3-219ENST00000565778 ERICH6BQ5W0A0 696 aa23.71■■□□□ 1.39
CLN3-219ENST00000565778 RUFY3Q7L099 469 aa23.71■■□□□ 1.39
CLN3-219ENST00000565778 TRIM50Q86XT4 487 aa23.71■■□□□ 1.39
CLN3-219ENST00000565778 MXRA8Q9BRK3 442 aa23.71■■□□□ 1.39
CLN3-219ENST00000565778 AGXT2Q9BYV1 514 aa23.71■■□□□ 1.39
CLN3-219ENST00000565778 SETD4Q9NVD3 440 aa23.71■■□□□ 1.39
CLN3-219ENST00000565778 TMEM260Q9NX78 707 aa23.71■■□□□ 1.39
CLN3-219ENST00000565778 YBX2Q9Y2T7 364 aaKnown RBP23.71■■□□□ 1.39
CLN3-219ENST00000565778 TCF7P36402 384 aaPredicted RBP23.7■■□□□ 1.38
CLN3-219ENST00000565778 THPOP40225 353 aa23.7■■□□□ 1.38
CLN3-219ENST00000565778 TRIM71Q2Q1W2 868 aaKnown RBP23.7■■□□□ 1.38
CLN3-219ENST00000565778 SERINC5Q86VE9 423 aa23.7■■□□□ 1.38
CLN3-219ENST00000565778 MAFAQ8NHW3 353 aaPredicted RBP23.7■■□□□ 1.38
CLN3-219ENST00000565778 PHOSPHO2Q8TCD6 241 aa23.7■■□□□ 1.38
CLN3-219ENST00000565778 WNT8BQ93098 351 aa23.7■■□□□ 1.38
CLN3-219ENST00000565778 ANO3Q9BYT9 981 aa23.7■■□□□ 1.38
CLN3-219ENST00000565778 ZSWIM6Q9HCJ5 1215 aa23.7■■□□□ 1.38
CLN3-219ENST00000565778 PCDHA11Q9Y5I1 949 aa23.7■■□□□ 1.38
CLN3-219ENST00000565778 CYP46A1Q9Y6A2 500 aa23.7■■□□□ 1.38
CLN3-219ENST00000565778 TREHO43280 583 aa23.69■■□□□ 1.38
CLN3-219ENST00000565778 PRPF3O43395 683 aaKnown RBP23.69■■□□□ 1.38
CLN3-219ENST00000565778 NBNO60934 754 aa23.69■■□□□ 1.38
CLN3-219ENST00000565778 MYOGP15173 224 aa23.69■■□□□ 1.38
CLN3-219ENST00000565778 ZNF76P36508 570 aa23.69■■□□□ 1.38
CLN3-219ENST00000565778 CCT2P78371 535 aaKnown RBP23.69■■□□□ 1.38
CLN3-219ENST00000565778 CYP2W1Q8TAV3 490 aa23.69■■□□□ 1.38
CLN3-219ENST00000565778 PHKBQ93100 1093 aa23.69■■□□□ 1.38
CLN3-219ENST00000565778 PRDM12Q9H4Q4 367 aa23.69■■□□□ 1.38
CLN3-219ENST00000565778 KCNH7Q9NS40 1196 aa23.69■■□□□ 1.38
CLN3-219ENST00000565778 SCN5AQ14524 2016 aa23.69■■□□□ 1.38
CLN3-219ENST00000565778 GSTTP1A0A1W2PQM5 241 aa23.68■■□□□ 1.38
CLN3-219ENST00000565778 RSPH10B2B2RC85 870 aa23.68■■□□□ 1.38
CLN3-219ENST00000565778 BAIAP3O94812 1187 aa23.68■■□□□ 1.38
CLN3-219ENST00000565778 RSPH10BP0C881 870 aa23.68■■□□□ 1.38
CLN3-219ENST00000565778 PDIA3P30101 505 aaKnown RBP23.68■■□□□ 1.38
CLN3-219ENST00000565778 KCNJ6P48051 423 aa23.68■■□□□ 1.38
CLN3-219ENST00000565778 CLK2P49760 499 aaKnown RBP23.68■■□□□ 1.38
CLN3-219ENST00000565778 AP3B2Q13367 1082 aa23.68■■□□□ 1.38
CLN3-219ENST00000565778 JAKMIP3Q5VZ66 844 aa23.68■■□□□ 1.38
CLN3-219ENST00000565778 CNKSR3Q6P9H4 555 aa23.68■■□□□ 1.38
CLN3-219ENST00000565778 CCDC12Q8WUD4 166 aaPredicted RBP23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms