RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 SENP7Q9BQF6 1050 aa21.57■■□□□ 1.04
CLN3-218ENST00000565688 ZBED2Q9BTP6 218 aa21.57■■□□□ 1.04
CLN3-218ENST00000565688 RTEL1Q9NZ71 1219 aa21.57■■□□□ 1.04
CLN3-218ENST00000565688 REV3LO60673 3130 aa21.56■■□□□ 1.04
CLN3-218ENST00000565688 MEIS2O14770 477 aa21.56■■□□□ 1.04
CLN3-218ENST00000565688 HOXC8P31273 242 aa21.56■■□□□ 1.04
CLN3-218ENST00000565688 NECTIN1Q15223 517 aa21.56■■□□□ 1.04
CLN3-218ENST00000565688 CREB3L3Q68CJ9 461 aa21.56■■□□□ 1.04
CLN3-218ENST00000565688 CYFIP1Q7L576 1253 aa21.56■■□□□ 1.04
CLN3-218ENST00000565688 MICALL1Q8N3F8 863 aa21.56■■□□□ 1.04
CLN3-218ENST00000565688 SRBD1Q8N5C6 995 aaKnown RBP21.56■■□□□ 1.04
CLN3-218ENST00000565688 GIMAP8Q8ND71 665 aaPredicted RBP21.56■■□□□ 1.04
CLN3-218ENST00000565688 ARNTL2Q8WYA1 636 aa21.56■■□□□ 1.04
CLN3-218ENST00000565688 WNT8BQ93098 351 aa21.56■■□□□ 1.04
CLN3-218ENST00000565688 CERS4Q9HA82 394 aa21.56■■□□□ 1.04
CLN3-218ENST00000565688 ANO2Q9NQ90 1003 aa21.56■■□□□ 1.04
CLN3-218ENST00000565688 SLC12A7Q9Y666 1083 aa21.56■■□□□ 1.04
CLN3-218ENST00000565688 LGR5O75473 907 aa21.55■■□□□ 1.04
CLN3-218ENST00000565688 PLEKHA8P1O95397 391 aa21.55■■□□□ 1.04
CLN3-218ENST00000565688 SMIM10L2AP0DMW4 78 aa21.55■■□□□ 1.04
CLN3-218ENST00000565688 SMIM10L2BP0DMW5 78 aa21.55■■□□□ 1.04
CLN3-218ENST00000565688 GNAT1P11488 350 aa21.55■■□□□ 1.04
CLN3-218ENST00000565688 THPOP40225 353 aa21.55■■□□□ 1.04
CLN3-218ENST00000565688 SEMA3FQ13275 785 aa21.55■■□□□ 1.04
CLN3-218ENST00000565688 HIC1Q14526 733 aa21.55■■□□□ 1.04
CLN3-218ENST00000565688 NLRX1Q86UT6 975 aa21.55■■□□□ 1.04
CLN3-218ENST00000565688 IL27Q8NEV9 243 aa21.55■■□□□ 1.04
CLN3-218ENST00000565688 GPR20Q99678 358 aa21.55■■□□□ 1.04
CLN3-218ENST00000565688 BCAS3Q9H6U6 928 aa21.55■■□□□ 1.04
CLN3-218ENST00000565688 PSTPIP2Q9H939 334 aa21.55■■□□□ 1.04
CLN3-218ENST00000565688 ZNF215Q9UL58 517 aaPredicted RBP21.55■■□□□ 1.04
CLN3-218ENST00000565688 MTCH2Q9Y6C9 303 aa21.55■■□□□ 1.04
CLN3-218ENST00000565688 BDP1A6H8Y1 2624 aa21.54■■□□□ 1.04
CLN3-218ENST00000565688 RSPH10B2B2RC85 870 aa21.54■■□□□ 1.04
CLN3-218ENST00000565688 CAND2O75155 1236 aa21.54■■□□□ 1.04
CLN3-218ENST00000565688 GJB5O95377 273 aa21.54■■□□□ 1.04
CLN3-218ENST00000565688 RSPH10BP0C881 870 aa21.54■■□□□ 1.04
CLN3-218ENST00000565688 DEFB103AP81534 67 aa21.54■■□□□ 1.04
CLN3-218ENST00000565688 MBTPS1Q14703 1052 aa21.54■■□□□ 1.04
CLN3-218ENST00000565688 RNF20Q5VTR2 975 aa21.54■■□□□ 1.04
CLN3-218ENST00000565688 CDHR1Q96JP9 859 aa21.54■■□□□ 1.04
CLN3-218ENST00000565688 RAD9AQ99638 391 aa21.54■■□□□ 1.04
CLN3-218ENST00000565688 EPOPA6NHQ4 379 aa21.53■■□□□ 1.04
CLN3-218ENST00000565688 TNFRSF10AO00220 468 aa21.53■■□□□ 1.04
CLN3-218ENST00000565688 RFXAPO00287 272 aa21.53■■□□□ 1.04
CLN3-218ENST00000565688 ARHGEF15O94989 841 aa21.53■■□□□ 1.04
CLN3-218ENST00000565688 AAK1Q2M2I8 961 aa21.53■■□□□ 1.04
CLN3-218ENST00000565688 BMP2KLQ5H9B9 411 aa21.53■■□□□ 1.04
CLN3-218ENST00000565688 SGMS1Q86VZ5 419 aa21.53■■□□□ 1.04
CLN3-218ENST00000565688 FANCBQ8NB91 859 aa21.53■■□□□ 1.04
CLN3-218ENST00000565688 GPRASP2Q96D09 838 aa21.53■■□□□ 1.04
CLN3-218ENST00000565688 RNPEPQ9H4A4 650 aa21.53■■□□□ 1.04
CLN3-218ENST00000565688 RXRAP19793 462 aa21.52■■□□□ 1.04
CLN3-218ENST00000565688 TCTN1Q2MV58 587 aa21.52■■□□□ 1.04
CLN3-218ENST00000565688 SYNE3Q6ZMZ3 975 aa21.52■■□□□ 1.04
CLN3-218ENST00000565688 TMTC3Q6ZXV5 915 aa21.52■■□□□ 1.04
CLN3-218ENST00000565688 CMTR1Q8N1G2 835 aaKnown RBP21.52■■□□□ 1.04
CLN3-218ENST00000565688 MUC3AQ02505 3323 aa21.52■■□□□ 1.04
CLN3-218ENST00000565688 PTPRSQ13332 1948 aa21.51■■□□□ 1.03
CLN3-218ENST00000565688 LCHNA4D1U4 455 aa21.51■■□□□ 1.03
CLN3-218ENST00000565688 TREHO43280 583 aa21.51■■□□□ 1.03
CLN3-218ENST00000565688 SKIV2LQ15477 1246 aaKnown RBP21.51■■□□□ 1.03
CLN3-218ENST00000565688 TMCO2Q7Z6W1 182 aaPredicted RBP21.51■■□□□ 1.03
CLN3-218ENST00000565688 ADAMTS19Q8TE59 1207 aa21.51■■□□□ 1.03
CLN3-218ENST00000565688 XIRP2A4UGR9 3374 aa21.51■■□□□ 1.03
CLN3-218ENST00000565688 PRRC2BQ5JSZ5 2229 aaKnown RBP21.51■■□□□ 1.03
CLN3-218ENST00000565688 SPDYE3A6NKU9 549 aa21.5■■□□□ 1.03
CLN3-218ENST00000565688 AMHP03971 560 aa21.5■■□□□ 1.03
CLN3-218ENST00000565688 GRB10Q13322 594 aa21.5■■□□□ 1.03
CLN3-218ENST00000565688 COL9A3Q14050 684 aaPredicted RBP21.5■■□□□ 1.03
CLN3-218ENST00000565688 PLEKHG4Q58EX7 1191 aa21.5■■□□□ 1.03
CLN3-218ENST00000565688 CENPQQ7L2Z9 268 aaPredicted RBP21.5■■□□□ 1.03
CLN3-218ENST00000565688 TRIM50Q86XT4 487 aa21.5■■□□□ 1.03
CLN3-218ENST00000565688 TEX2Q8IWB9 1127 aa21.5■■□□□ 1.03
CLN3-218ENST00000565688 CCDC82Q8N4S0 544 aa21.5■■□□□ 1.03
CLN3-218ENST00000565688 DBF4BQ8NFT6 615 aa21.5■■□□□ 1.03
CLN3-218ENST00000565688 LRRC2Q9BYS8 371 aa21.5■■□□□ 1.03
CLN3-218ENST00000565688 EHMT1Q9H9B1 1298 aa21.5■■□□□ 1.03
CLN3-218ENST00000565688 SETD4Q9NVD3 440 aa21.5■■□□□ 1.03
CLN3-218ENST00000565688 INSL6Q9Y581 213 aa21.5■■□□□ 1.03
CLN3-218ENST00000565688 SP4Q02446 784 aa21.49■■□□□ 1.03
CLN3-218ENST00000565688 UTP14CQ5TAP6 766 aaKnown RBP21.49■■□□□ 1.03
CLN3-218ENST00000565688 MICU3Q86XE3 530 aa21.49■■□□□ 1.03
CLN3-218ENST00000565688 SEPT8Q92599 483 aa21.49■■□□□ 1.03
CLN3-218ENST00000565688 TGS1Q96RS0 853 aaKnown RBP21.49■■□□□ 1.03
CLN3-218ENST00000565688 RBM28Q9NW13 759 aaKnown RBP21.49■■□□□ 1.03
CLN3-218ENST00000565688 LMCD1Q9NZU5 365 aa21.49■■□□□ 1.03
CLN3-218ENST00000565688 COG5Q9UP83 839 aa21.49■■□□□ 1.03
CLN3-218ENST00000565688 NCOR1O75376 2440 aa21.49■■□□□ 1.03
CLN3-218ENST00000565688 NRCAMQ92823 1304 aa21.49■■□□□ 1.03
CLN3-218ENST00000565688 MAFGO15525 162 aa21.48■■□□□ 1.03
CLN3-218ENST00000565688 KCNA2P16389 499 aa21.48■■□□□ 1.03
CLN3-218ENST00000565688 ITGB5P18084 799 aa21.48■■□□□ 1.03
CLN3-218ENST00000565688 TCF7P36402 384 aaPredicted RBP21.48■■□□□ 1.03
CLN3-218ENST00000565688 ERVK-21P61565 698 aa21.48■■□□□ 1.03
CLN3-218ENST00000565688 ARHGAP4P98171 946 aa21.48■■□□□ 1.03
CLN3-218ENST00000565688 MKRN4PQ13434 485 aaPredicted RBP21.48■■□□□ 1.03
CLN3-218ENST00000565688 MTMR1Q13613 665 aa21.48■■□□□ 1.03
CLN3-218ENST00000565688 HEATR3Q7Z4Q2 680 aa21.48■■□□□ 1.03
CLN3-218ENST00000565688 RAB11FIP4Q86YS3 637 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms