RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 NAP1L2Q9ULW6 460 aaPredicted RBP25.8■■□□□ 1.72
CLN3-215ENST00000565236 TANC1Q9C0D5 1861 aa25.8■■□□□ 1.72
CLN3-215ENST00000565236 TET1Q8NFU7 2136 aa25.79■■□□□ 1.72
CLN3-215ENST00000565236 GBF1Q92538 1859 aa25.79■■□□□ 1.72
CLN3-215ENST00000565236 PHOSPHO2Q8TCD6 241 aa25.79■■□□□ 1.72
CLN3-215ENST00000565236 GPRASP2Q96D09 838 aa25.79■■□□□ 1.72
CLN3-215ENST00000565236 CDHR1Q96JP9 859 aa25.79■■□□□ 1.72
CLN3-215ENST00000565236 SLC9A7Q96T83 725 aa25.79■■□□□ 1.72
CLN3-215ENST00000565236 GPR20Q99678 358 aa25.79■■□□□ 1.72
CLN3-215ENST00000565236 PCDHA6Q9UN73 950 aa25.79■■□□□ 1.72
CLN3-215ENST00000565236 PCDHA8Q9Y5H6 950 aa25.79■■□□□ 1.72
CLN3-215ENST00000565236 V9GY48 417 aaPredicted RBP25.79■■□□□ 1.72
CLN3-215ENST00000565236 CNTNAP5Q8WYK1 1306 aa25.79■■□□□ 1.72
CLN3-215ENST00000565236 PRUNE2Q8WUY3 3088 aa25.79■■□□□ 1.72
CLN3-215ENST00000565236 C17orf102A2RUQ5 167 aa25.78■■□□□ 1.72
CLN3-215ENST00000565236 GOLGA8AA7E2F4 631 aa25.78■■□□□ 1.72
CLN3-215ENST00000565236 GOLGA8BA8MQT2 603 aa25.78■■□□□ 1.72
CLN3-215ENST00000565236 BAIAP3O94812 1187 aa25.78■■□□□ 1.72
CLN3-215ENST00000565236 MYOGP15173 224 aa25.78■■□□□ 1.72
CLN3-215ENST00000565236 NAPAP54920 295 aa25.78■■□□□ 1.72
CLN3-215ENST00000565236 SP4Q02446 784 aa25.78■■□□□ 1.72
CLN3-215ENST00000565236 WWC2Q6AWC2 1192 aa25.78■■□□□ 1.72
CLN3-215ENST00000565236 EHMT1Q9H9B1 1298 aa25.78■■□□□ 1.72
CLN3-215ENST00000565236 SMIM10L2AP0DMW4 78 aa25.77■■□□□ 1.72
CLN3-215ENST00000565236 SMIM10L2BP0DMW5 78 aa25.77■■□□□ 1.72
CLN3-215ENST00000565236 FUT2Q10981 343 aa25.77■■□□□ 1.72
CLN3-215ENST00000565236 HIC1Q14526 733 aa25.77■■□□□ 1.72
CLN3-215ENST00000565236 GPNMBQ14956 572 aa25.77■■□□□ 1.72
CLN3-215ENST00000565236 ZNF618Q5T7W0 954 aa25.77■■□□□ 1.72
CLN3-215ENST00000565236 UTP14CQ5TAP6 766 aaKnown RBP25.77■■□□□ 1.72
CLN3-215ENST00000565236 PPP2R2DQ66LE6 453 aa25.77■■□□□ 1.72
CLN3-215ENST00000565236 KCNB2Q92953 911 aa25.77■■□□□ 1.72
CLN3-215ENST00000565236 ATP6V0A1Q93050 837 aa25.77■■□□□ 1.72
CLN3-215ENST00000565236 DOCK5Q9H7D0 1870 aa25.77■■□□□ 1.72
CLN3-215ENST00000565236 CPA1P15085 419 aa25.76■■□□□ 1.71
CLN3-215ENST00000565236 ITGB5P18084 799 aa25.76■■□□□ 1.71
CLN3-215ENST00000565236 HSPA4P34932 840 aa25.76■■□□□ 1.71
CLN3-215ENST00000565236 KCNJ6P48051 423 aa25.76■■□□□ 1.71
CLN3-215ENST00000565236 RCAN1P53805 252 aa25.76■■□□□ 1.71
CLN3-215ENST00000565236 TRIM71Q2Q1W2 868 aaKnown RBP25.76■■□□□ 1.71
CLN3-215ENST00000565236 SERINC5Q86VE9 423 aa25.76■■□□□ 1.71
CLN3-215ENST00000565236 WNT8BQ93098 351 aa25.76■■□□□ 1.71
CLN3-215ENST00000565236 JAKMIP1Q96N16 626 aaKnown RBP25.76■■□□□ 1.71
CLN3-215ENST00000565236 RNPEPQ9H4A4 650 aa25.76■■□□□ 1.71
CLN3-215ENST00000565236 ZNF215Q9UL58 517 aaPredicted RBP25.76■■□□□ 1.71
CLN3-215ENST00000565236 KIF28PB7ZC32 967 aa25.75■■□□□ 1.71
CLN3-215ENST00000565236 NBNO60934 754 aa25.75■■□□□ 1.71
CLN3-215ENST00000565236 REC8O95072 547 aa25.75■■□□□ 1.71
CLN3-215ENST00000565236 CXCL10P02778 98 aa25.75■■□□□ 1.71
CLN3-215ENST00000565236 PPP1R18Q6NYC8 613 aa25.75■■□□□ 1.71
CLN3-215ENST00000565236 CNKSR3Q6P9H4 555 aa25.75■■□□□ 1.71
CLN3-215ENST00000565236 TEX2Q8IWB9 1127 aa25.75■■□□□ 1.71
CLN3-215ENST00000565236 RIC8AQ9NPQ8 531 aa25.75■■□□□ 1.71
CLN3-215ENST00000565236 FAM217BQ9NTX9 383 aaPredicted RBP25.75■■□□□ 1.71
CLN3-215ENST00000565236 TELO2Q9Y4R8 837 aa25.75■■□□□ 1.71
CLN3-215ENST00000565236 SNX14Q9Y5W7 946 aa25.75■■□□□ 1.71
CLN3-215ENST00000565236 UBIAD1Q9Y5Z9 338 aa25.75■■□□□ 1.71
CLN3-215ENST00000565236 hCG_1984214I3L0E3 225 aa25.74■■□□□ 1.71
CLN3-215ENST00000565236 MAFGO15525 162 aa25.74■■□□□ 1.71
CLN3-215ENST00000565236 ATP9AO75110 1047 aa25.74■■□□□ 1.71
CLN3-215ENST00000565236 NEFLP07196 543 aa25.74■■□□□ 1.71
CLN3-215ENST00000565236 GNAT1P11488 350 aa25.74■■□□□ 1.71
CLN3-215ENST00000565236 CDC27P30260 824 aa25.74■■□□□ 1.71
CLN3-215ENST00000565236 THPOP40225 353 aa25.74■■□□□ 1.71
CLN3-215ENST00000565236 MTMR1Q13613 665 aa25.74■■□□□ 1.71
CLN3-215ENST00000565236 BLOC1S2Q6QNY1 142 aa25.74■■□□□ 1.71
CLN3-215ENST00000565236 Q6ZUG5 572 aa25.74■■□□□ 1.71
CLN3-215ENST00000565236 TRIM50Q86XT4 487 aa25.74■■□□□ 1.71
CLN3-215ENST00000565236 HERC6Q8IVU3 1022 aa25.74■■□□□ 1.71
CLN3-215ENST00000565236 ZNF713Q8N859 430 aaPredicted RBP25.74■■□□□ 1.71
CLN3-215ENST00000565236 CCDC196A0A1B0GTZ2 297 aa25.73■■□□□ 1.71
CLN3-215ENST00000565236 TREHO43280 583 aa25.73■■□□□ 1.71
CLN3-215ENST00000565236 FOSP01100 380 aaPredicted RBP25.73■■□□□ 1.71
CLN3-215ENST00000565236 KCNA2P16389 499 aa25.73■■□□□ 1.71
CLN3-215ENST00000565236 IGFBP4P22692 258 aa25.73■■□□□ 1.71
CLN3-215ENST00000565236 HOXC8P31273 242 aa25.73■■□□□ 1.71
CLN3-215ENST00000565236 METAP2P50579 478 aaKnown RBP eCLIP25.73■■□□□ 1.71
CLN3-215ENST00000565236 ADCY7P51828 1080 aa25.73■■□□□ 1.71
CLN3-215ENST00000565236 APOBRQ0VD83 1088 aa25.73■■□□□ 1.71
CLN3-215ENST00000565236 TYW1BQ6NUM6 668 aa25.73■■□□□ 1.71
CLN3-215ENST00000565236 JADE2Q9NQC1 790 aa25.73■■□□□ 1.71
CLN3-215ENST00000565236 SETD4Q9NVD3 440 aa25.73■■□□□ 1.71
CLN3-215ENST00000565236 BARHL2Q9NY43 387 aa25.73■■□□□ 1.71
CLN3-215ENST00000565236 PKD2L1Q9P0L9 805 aa25.73■■□□□ 1.71
CLN3-215ENST00000565236 CHD7Q9P2D1 2997 aa25.72■■□□□ 1.71
CLN3-215ENST00000565236 CUL9Q8IWT3 2517 aa25.72■■□□□ 1.71
CLN3-215ENST00000565236 SMCO2A6NFE2 343 aa25.72■■□□□ 1.71
CLN3-215ENST00000565236 RSPH10B2B2RC85 870 aa25.72■■□□□ 1.71
CLN3-215ENST00000565236 STXBP3O00186 592 aa25.72■■□□□ 1.71
CLN3-215ENST00000565236 CA3P07451 260 aa25.72■■□□□ 1.71
CLN3-215ENST00000565236 RSPH10BP0C881 870 aa25.72■■□□□ 1.71
CLN3-215ENST00000565236 ADD1P35611 737 aaKnown RBP25.72■■□□□ 1.71
CLN3-215ENST00000565236 TCF7P36402 384 aaPredicted RBP25.72■■□□□ 1.71
CLN3-215ENST00000565236 WDR5P61964 334 aaKnown RBP25.72■■□□□ 1.71
CLN3-215ENST00000565236 IKBKEQ14164 716 aa25.72■■□□□ 1.71
CLN3-215ENST00000565236 TRAF7Q6Q0C0 670 aa25.72■■□□□ 1.71
CLN3-215ENST00000565236 SEPT1Q8WYJ6 367 aa25.72■■□□□ 1.71
CLN3-215ENST00000565236 BRF1Q92994 677 aa25.72■■□□□ 1.71
CLN3-215ENST00000565236 GLT8D2Q9H1C3 349 aa25.72■■□□□ 1.71
CLN3-215ENST00000565236 EMSYQ7Z589 1322 aa25.71■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms