RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 DEFB128Q7Z7B8 93 aa17.09■□□□□ 0.33
CLN3-213ENST00000565047 AFAP1L1Q8TED9 768 aa17.09■□□□□ 0.33
CLN3-213ENST00000565047 MYLIPQ8WY64 445 aa17.09■□□□□ 0.33
CLN3-213ENST00000565047 GPRASP2Q96D09 838 aa17.09■□□□□ 0.33
CLN3-213ENST00000565047 JAKMIP1Q96N16 626 aaKnown RBP17.09■□□□□ 0.33
CLN3-213ENST00000565047 ZNF576Q9H609 170 aa17.09■□□□□ 0.33
CLN3-213ENST00000565047 TUT1Q9H6E5 874 aaKnown RBP17.09■□□□□ 0.33
CLN3-213ENST00000565047 RIC8AQ9NPQ8 531 aa17.09■□□□□ 0.33
CLN3-213ENST00000565047 YBX2Q9Y2T7 364 aaKnown RBP17.09■□□□□ 0.33
CLN3-213ENST00000565047 TET1Q8NFU7 2136 aa17.08■□□□□ 0.33
CLN3-213ENST00000565047 CXCL10P02778 98 aa17.08■□□□□ 0.32
CLN3-213ENST00000565047 RPS6KB1P23443 525 aa17.08■□□□□ 0.32
CLN3-213ENST00000565047 ADAM17P78536 824 aa17.08■□□□□ 0.32
CLN3-213ENST00000565047 APOBRQ0VD83 1088 aa17.08■□□□□ 0.32
CLN3-213ENST00000565047 TCTN1Q2MV58 587 aa17.08■□□□□ 0.32
CLN3-213ENST00000565047 Q6ZUG5 572 aa17.08■□□□□ 0.32
CLN3-213ENST00000565047 RETREG2Q8NC44 543 aa17.08■□□□□ 0.32
CLN3-213ENST00000565047 SLC17A8Q8NDX2 589 aa17.08■□□□□ 0.32
CLN3-213ENST00000565047 USP26Q9BXU7 913 aa17.08■□□□□ 0.32
CLN3-213ENST00000565047 MTIF3Q9H2K0 278 aaKnown RBP17.08■□□□□ 0.32
CLN3-213ENST00000565047 BARHL2Q9NY43 387 aa17.08■□□□□ 0.32
CLN3-213ENST00000565047 SPTBN5Q9NRC6 3674 aaKnown RBP17.08■□□□□ 0.32
CLN3-213ENST00000565047 VCANP13611 3396 aa17.08■□□□□ 0.32
CLN3-213ENST00000565047 GOLGA8AA7E2F4 631 aa17.07■□□□□ 0.32
CLN3-213ENST00000565047 GOLGA8BA8MQT2 603 aa17.07■□□□□ 0.32
CLN3-213ENST00000565047 hCG_1984214I3L0E3 225 aa17.07■□□□□ 0.32
CLN3-213ENST00000565047 ADAMTS3O15072 1205 aa17.07■□□□□ 0.32
CLN3-213ENST00000565047 NBNO60934 754 aa17.07■□□□□ 0.32
CLN3-213ENST00000565047 REC8O95072 547 aa17.07■□□□□ 0.32
CLN3-213ENST00000565047 SELPP16109 830 aa17.07■□□□□ 0.32
CLN3-213ENST00000565047 MBTPS1Q14703 1052 aa17.07■□□□□ 0.32
CLN3-213ENST00000565047 NTRK3Q16288 839 aa17.07■□□□□ 0.32
CLN3-213ENST00000565047 PKN1Q16512 942 aa17.07■□□□□ 0.32
CLN3-213ENST00000565047 PPP1R18Q6NYC8 613 aa17.07■□□□□ 0.32
CLN3-213ENST00000565047 NLRX1Q86UT6 975 aa17.07■□□□□ 0.32
CLN3-213ENST00000565047 SERINC5Q86VE9 423 aa17.07■□□□□ 0.32
CLN3-213ENST00000565047 ZNF713Q8N859 430 aaPredicted RBP17.07■□□□□ 0.32
CLN3-213ENST00000565047 BRF1Q92994 677 aa17.07■□□□□ 0.32
CLN3-213ENST00000565047 RNPEPQ9H4A4 650 aa17.07■□□□□ 0.32
CLN3-213ENST00000565047 JADE2Q9NQC1 790 aa17.07■□□□□ 0.32
CLN3-213ENST00000565047 NOD1Q9Y239 953 aa17.07■□□□□ 0.32
CLN3-213ENST00000565047 SLC4A7Q9Y6M7 1214 aa17.07■□□□□ 0.32
CLN3-213ENST00000565047 TRIP12Q14669 1992 aaPredicted RBP17.07■□□□□ 0.32
CLN3-213ENST00000565047 DOCK5Q9H7D0 1870 aa17.07■□□□□ 0.32
CLN3-213ENST00000565047 RABGGTBP53611 331 aa17.06■□□□□ 0.32
CLN3-213ENST00000565047 PFKFB3Q16875 520 aaPredicted RBP17.06■□□□□ 0.32
CLN3-213ENST00000565047 BLOC1S2Q6QNY1 142 aa17.06■□□□□ 0.32
CLN3-213ENST00000565047 LRRC8DQ7L1W4 858 aa17.06■□□□□ 0.32
CLN3-213ENST00000565047 TRIM50Q86XT4 487 aa17.06■□□□□ 0.32
CLN3-213ENST00000565047 CYP2W1Q8TAV3 490 aa17.06■□□□□ 0.32
CLN3-213ENST00000565047 GBF1Q92538 1859 aa17.05■□□□□ 0.32
CLN3-213ENST00000565047 GSTTP1A0A1W2PQM5 241 aa17.05■□□□□ 0.32
CLN3-213ENST00000565047 SPDYE3A6NKU9 549 aa17.05■□□□□ 0.32
CLN3-213ENST00000565047 MAFGO15525 162 aa17.05■□□□□ 0.32
CLN3-213ENST00000565047 SMIM10L2AP0DMW4 78 aa17.05■□□□□ 0.32
CLN3-213ENST00000565047 SMIM10L2BP0DMW5 78 aa17.05■□□□□ 0.32
CLN3-213ENST00000565047 MYOGP15173 224 aa17.05■□□□□ 0.32
CLN3-213ENST00000565047 ATP2A2P16615 1042 aaKnown RBP17.05■□□□□ 0.32
CLN3-213ENST00000565047 METAP2P50579 478 aaKnown RBP eCLIP17.05■□□□□ 0.32
CLN3-213ENST00000565047 NAPAP54920 295 aa17.05■□□□□ 0.32
CLN3-213ENST00000565047 MKRN4PQ13434 485 aaPredicted RBP17.05■□□□□ 0.32
CLN3-213ENST00000565047 RAB30Q15771 203 aa17.05■□□□□ 0.32
CLN3-213ENST00000565047 ZNF618Q5T7W0 954 aa17.05■□□□□ 0.32
CLN3-213ENST00000565047 CCDC155Q8N6L0 562 aa17.05■□□□□ 0.32
CLN3-213ENST00000565047 PHOSPHO2Q8TCD6 241 aa17.05■□□□□ 0.32
CLN3-213ENST00000565047 CRYGNQ8WXF5 182 aa17.05■□□□□ 0.32
CLN3-213ENST00000565047 CDHR1Q96JP9 859 aa17.05■□□□□ 0.32
CLN3-213ENST00000565047 NKX2-4Q9H2Z4 354 aa17.05■□□□□ 0.32
CLN3-213ENST00000565047 ZSWIM6Q9HCJ5 1215 aa17.05■□□□□ 0.32
CLN3-213ENST00000565047 PCDHA11Q9Y5I1 949 aa17.05■□□□□ 0.32
CLN3-213ENST00000565047 SMCO2A6NFE2 343 aa17.04■□□□□ 0.32
CLN3-213ENST00000565047 TREHO43280 583 aa17.04■□□□□ 0.32
CLN3-213ENST00000565047 BAIAP3O94812 1187 aa17.04■□□□□ 0.32
CLN3-213ENST00000565047 PARNO95453 639 aaKnown RBP17.04■□□□□ 0.32
CLN3-213ENST00000565047 PDIA3P30101 505 aaKnown RBP17.04■□□□□ 0.32
CLN3-213ENST00000565047 MTMR1Q13613 665 aa17.04■□□□□ 0.32
CLN3-213ENST00000565047 TOB2Q14106 344 aaPredicted RBP17.04■□□□□ 0.32
CLN3-213ENST00000565047 GIMAP8Q8ND71 665 aaPredicted RBP17.04■□□□□ 0.32
CLN3-213ENST00000565047 PGBD1Q96JS3 809 aa17.04■□□□□ 0.32
CLN3-213ENST00000565047 MXRA8Q9BRK3 442 aa17.04■□□□□ 0.32
CLN3-213ENST00000565047 CCDC196A0A1B0GTZ2 297 aa17.03■□□□□ 0.32
CLN3-213ENST00000565047 ESYT2A0FGR8 921 aa17.03■□□□□ 0.32
CLN3-213ENST00000565047 C17orf102A2RUQ5 167 aa17.03■□□□□ 0.32
CLN3-213ENST00000565047 ZBBXA8MT70 800 aa17.03■□□□□ 0.32
CLN3-213ENST00000565047 MEIS1O00470 390 aa17.03■□□□□ 0.32
CLN3-213ENST00000565047 NOP56O00567 594 aaKnown RBP17.03■□□□□ 0.32
CLN3-213ENST00000565047 PRPF3O43395 683 aaKnown RBP17.03■□□□□ 0.32
CLN3-213ENST00000565047 FOSP01100 380 aaPredicted RBP17.03■□□□□ 0.32
CLN3-213ENST00000565047 ACTN1P12814 892 aa17.03■□□□□ 0.32
CLN3-213ENST00000565047 SCG2P13521 617 aa17.03■□□□□ 0.32
CLN3-213ENST00000565047 PSMA5P28066 241 aa17.03■□□□□ 0.32
CLN3-213ENST00000565047 SREBF1P36956 1147 aa17.03■□□□□ 0.32
CLN3-213ENST00000565047 ADCY7P51828 1080 aa17.03■□□□□ 0.32
CLN3-213ENST00000565047 ADGRE1Q14246 886 aa17.03■□□□□ 0.32
CLN3-213ENST00000565047 ERICH6BQ5W0A0 696 aa17.03■□□□□ 0.32
CLN3-213ENST00000565047 RUFY3Q7L099 469 aa17.03■□□□□ 0.32
CLN3-213ENST00000565047 MAFAQ8NHW3 353 aaPredicted RBP17.03■□□□□ 0.32
CLN3-213ENST00000565047 PCYT2Q99447 389 aa17.03■□□□□ 0.32
CLN3-213ENST00000565047 ANO3Q9BYT9 981 aa17.03■□□□□ 0.32
CLN3-213ENST00000565047 OSBPL7Q9BZF2 842 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms