RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 TEKT3Q9BXF9 490 aa23.3■■□□□ 1.32
CLN3-212ENST00000564574 SEPT4O43236 478 aa23.29■■□□□ 1.32
CLN3-212ENST00000564574 GAS7O60861 476 aa23.29■■□□□ 1.32
CLN3-212ENST00000564574 ATP9AO75110 1047 aa23.29■■□□□ 1.32
CLN3-212ENST00000564574 PSMD10O75832 226 aa23.29■■□□□ 1.32
CLN3-212ENST00000564574 ARIH2O95376 493 aa23.29■■□□□ 1.32
CLN3-212ENST00000564574 TXKP42681 527 aa23.29■■□□□ 1.32
CLN3-212ENST00000564574 TNFAIP2Q03169 654 aa23.29■■□□□ 1.32
CLN3-212ENST00000564574 ITGB3BPQ13352 177 aaPredicted RBP23.29■■□□□ 1.32
CLN3-212ENST00000564574 CSPP1Q1MSJ5 1256 aa23.29■■□□□ 1.32
CLN3-212ENST00000564574 DTHD1Q6ZMT9 781 aa23.29■■□□□ 1.32
CLN3-212ENST00000564574 LEO1Q8WVC0 666 aaPredicted RBP23.29■■□□□ 1.32
CLN3-212ENST00000564574 GBP4Q96PP9 640 aa23.29■■□□□ 1.32
CLN3-212ENST00000564574 PKD2L1Q9P0L9 805 aa23.29■■□□□ 1.32
CLN3-212ENST00000564574 TCEAL9Q9UHQ7 104 aa23.29■■□□□ 1.32
CLN3-212ENST00000564574 PCDHA12Q9UN75 941 aa23.29■■□□□ 1.32
CLN3-212ENST00000564574 DHX15O43143 795 aaKnown RBP23.28■■□□□ 1.32
CLN3-212ENST00000564574 GH1P01241 217 aa23.28■■□□□ 1.32
CLN3-212ENST00000564574 FXR2P51116 673 aaKnown RBP eCLIP23.28■■□□□ 1.32
CLN3-212ENST00000564574 SP2Q02086 613 aa23.28■■□□□ 1.32
CLN3-212ENST00000564574 LY6KQ17RY6 165 aa23.28■■□□□ 1.32
CLN3-212ENST00000564574 SLC9C1Q4G0N8 1177 aa23.28■■□□□ 1.32
CLN3-212ENST00000564574 CHAMP1Q96JM3 812 aa23.28■■□□□ 1.32
CLN3-212ENST00000564574 RAB34Q9BZG1 259 aa23.28■■□□□ 1.32
CLN3-212ENST00000564574 TTC12Q9H892 705 aaPredicted RBP23.28■■□□□ 1.32
CLN3-212ENST00000564574 Q9Y3F1 56 aa23.28■■□□□ 1.32
CLN3-212ENST00000564574 SRPRBQ9Y5M8 271 aaKnown RBP23.28■■□□□ 1.32
CLN3-212ENST00000564574 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.27■■□□□ 1.32
CLN3-212ENST00000564574 GGPS1O95749 300 aa23.27■■□□□ 1.32
CLN3-212ENST00000564574 SMPD1P17405 629 aa23.27■■□□□ 1.32
CLN3-212ENST00000564574 KRT76Q01546 638 aa23.27■■□□□ 1.32
CLN3-212ENST00000564574 PPP2R5CQ13362 524 aa23.27■■□□□ 1.32
CLN3-212ENST00000564574 CELF3Q5SZQ8 465 aaKnown RBP23.27■■□□□ 1.32
CLN3-212ENST00000564574 METTL7BQ6UX53 244 aa23.27■■□□□ 1.32
CLN3-212ENST00000564574 DHX37Q8IY37 1157 aaKnown RBP23.27■■□□□ 1.32
CLN3-212ENST00000564574 KRI1Q8N9T8 703 aaKnown RBP23.27■■□□□ 1.32
CLN3-212ENST00000564574 EMID1Q96A84 441 aaPredicted RBP23.27■■□□□ 1.32
CLN3-212ENST00000564574 MCOLN1Q9GZU1 580 aa23.27■■□□□ 1.32
CLN3-212ENST00000564574 JPH1Q9HDC5 661 aaPredicted RBP23.27■■□□□ 1.32
CLN3-212ENST00000564574 HMX1Q9NP08 348 aaPredicted RBP23.27■■□□□ 1.32
CLN3-212ENST00000564574 ELP1O95163 1332 aa23.27■■□□□ 1.32
CLN3-212ENST00000564574 FARP2O94887 1054 aaPredicted RBP23.26■■□□□ 1.31
CLN3-212ENST00000564574 MARCKSP29966 332 aaPredicted RBP23.26■■□□□ 1.31
CLN3-212ENST00000564574 LAMC2Q13753 1193 aa23.26■■□□□ 1.31
CLN3-212ENST00000564574 PDIA5Q14554 519 aa23.26■■□□□ 1.31
CLN3-212ENST00000564574 ZNF746Q6NUN9 644 aaPredicted RBP23.26■■□□□ 1.31
CLN3-212ENST00000564574 SH3TC2Q8TF17 1288 aa23.26■■□□□ 1.31
CLN3-212ENST00000564574 MLXIPQ9HAP2 919 aa23.26■■□□□ 1.31
CLN3-212ENST00000564574 SLC9A2Q9UBY0 812 aa23.26■■□□□ 1.31
CLN3-212ENST00000564574 FBXO2Q9UK22 296 aaPredicted RBP23.26■■□□□ 1.31
CLN3-212ENST00000564574 VAV3Q9UKW4 847 aa23.26■■□□□ 1.31
CLN3-212ENST00000564574 GNEQ9Y223 722 aaKnown RBP23.26■■□□□ 1.31
CLN3-212ENST00000564574 FRMPD3Q5JV73 1810 aa23.25■■□□□ 1.31
CLN3-212ENST00000564574 MSCO60682 206 aa23.25■■□□□ 1.31
CLN3-212ENST00000564574 CUTAO60888 179 aa23.25■■□□□ 1.31
CLN3-212ENST00000564574 DUSP11O75319 330 aaKnown RBP23.25■■□□□ 1.31
CLN3-212ENST00000564574 CNGA1P29973 690 aa23.25■■□□□ 1.31
CLN3-212ENST00000564574 CCND3P30281 292 aaPredicted RBP23.25■■□□□ 1.31
CLN3-212ENST00000564574 LONP1P36776 959 aaKnown RBP23.25■■□□□ 1.31
CLN3-212ENST00000564574 B3GNT9Q6UX72 402 aa23.25■■□□□ 1.31
CLN3-212ENST00000564574 CYFIP1Q7L576 1253 aa23.25■■□□□ 1.31
CLN3-212ENST00000564574 GJA10Q969M2 543 aa23.25■■□□□ 1.31
CLN3-212ENST00000564574 AK8Q96MA6 479 aa23.25■■□□□ 1.31
CLN3-212ENST00000564574 UIMC1Q96RL1 719 aa23.25■■□□□ 1.31
CLN3-212ENST00000564574 STK24Q9Y6E0 443 aa23.25■■□□□ 1.31
CLN3-212ENST00000564574 WDR81Q562E7 1941 aa23.24■■□□□ 1.31
CLN3-212ENST00000564574 VWA3AA6NCI4 1184 aa23.24■■□□□ 1.31
CLN3-212ENST00000564574 CCDC85CA6NKD9 419 aa23.24■■□□□ 1.31
CLN3-212ENST00000564574 SFNP31947 248 aa23.24■■□□□ 1.31
CLN3-212ENST00000564574 TECP42680 631 aa23.24■■□□□ 1.31
CLN3-212ENST00000564574 JAK3P52333 1124 aa23.24■■□□□ 1.31
CLN3-212ENST00000564574 ARHGAP1Q07960 439 aa23.24■■□□□ 1.31
CLN3-212ENST00000564574 SPIRE1Q08AE8 756 aa23.24■■□□□ 1.31
CLN3-212ENST00000564574 SMAP1Q8IYB5 467 aaPredicted RBP23.24■■□□□ 1.31
CLN3-212ENST00000564574 IGSF22Q8N9C0 903 aa23.24■■□□□ 1.31
CLN3-212ENST00000564574 TMEM87AQ8NBN3 555 aa23.24■■□□□ 1.31
CLN3-212ENST00000564574 RDM1Q8NG50 284 aa23.24■■□□□ 1.31
CLN3-212ENST00000564574 COPS5Q92905 334 aa23.24■■□□□ 1.31
CLN3-212ENST00000564574 DDX39AO00148 427 aaKnown RBP23.23■■□□□ 1.31
CLN3-212ENST00000564574 ADCY6O43306 1168 aa23.23■■□□□ 1.31
CLN3-212ENST00000564574 RARBP10826 455 aa23.23■■□□□ 1.31
CLN3-212ENST00000564574 ME1P48163 572 aa23.23■■□□□ 1.31
CLN3-212ENST00000564574 IL17AQ16552 155 aa23.23■■□□□ 1.31
CLN3-212ENST00000564574 TMEM63BQ5T3F8 832 aa23.23■■□□□ 1.31
CLN3-212ENST00000564574 TLK2Q86UE8 772 aa23.23■■□□□ 1.31
CLN3-212ENST00000564574 ZNF579Q8NAF0 562 aaKnown RBP23.23■■□□□ 1.31
CLN3-212ENST00000564574 OR6J1Q8NGC5 347 aa23.23■■□□□ 1.31
CLN3-212ENST00000564574 UNC45AQ9H3U1 944 aa23.23■■□□□ 1.31
CLN3-212ENST00000564574 GDPD2Q9HCC8 539 aa23.23■■□□□ 1.31
CLN3-212ENST00000564574 LRWD1Q9UFC0 647 aa23.23■■□□□ 1.31
CLN3-212ENST00000564574 DDX20Q9UHI6 824 aaKnown RBP23.23■■□□□ 1.31
CLN3-212ENST00000564574 PCDHA7Q9UN72 937 aa23.23■■□□□ 1.31
CLN3-212ENST00000564574 WDR64B1ANS9 1081 aa23.22■■□□□ 1.31
CLN3-212ENST00000564574 MIER3Q7Z3K6 550 aa23.22■■□□□ 1.31
CLN3-212ENST00000564574 ARMC5Q96C12 935 aa23.22■■□□□ 1.31
CLN3-212ENST00000564574 SPATA33Q96N06 139 aa23.22■■□□□ 1.31
CLN3-212ENST00000564574 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.22■■□□□ 1.31
CLN3-212ENST00000564574 AP5M1Q9H0R1 490 aa23.22■■□□□ 1.31
CLN3-212ENST00000564574 CCNE2O96020 404 aa23.21■■□□□ 1.31
CLN3-212ENST00000564574 ACTR2P61160 394 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms