RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 GPATCH4Q5T3I0 446 aaKnown RBP8.56□□□□□ -1.04
VPS4A-203ENST00000564399 FBXL6Q8N531 539 aa8.56□□□□□ -1.04
VPS4A-203ENST00000564399 ATOH1Q92858 354 aaPredicted RBP8.56□□□□□ -1.04
VPS4A-203ENST00000564399 PPP2R3CQ969Q6 453 aa8.56□□□□□ -1.04
VPS4A-203ENST00000564399 TCP11L1Q9NUJ3 509 aa8.56□□□□□ -1.04
VPS4A-203ENST00000564399 COL20A1Q9P218 1284 aa8.56□□□□□ -1.04
VPS4A-203ENST00000564399 ANAPC4Q9UJX5 808 aa8.56□□□□□ -1.04
VPS4A-203ENST00000564399 RWDD3Q9Y3V2 267 aa8.56□□□□□ -1.04
VPS4A-203ENST00000564399 BAZ2BQ9UIF8 2168 aaKnown RBP8.56□□□□□ -1.04
VPS4A-203ENST00000564399 KMT2EQ8IZD2 1858 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 C5orf67F2Z3F1 127 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 FOXP2O15409 715 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 LINC01565O15544 149 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 TREHO43280 583 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 GGPS1O95749 300 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 CFBP00751 764 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 FGRP09769 529 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 SMIM10L2AP0DMW4 78 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 SMIM10L2BP0DMW5 78 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 ZXDAP98168 799 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 ADAM15Q13444 863 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 HSDL1Q3SXM5 330 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 CELF3Q5SZQ8 465 aaKnown RBP8.55□□□□□ -1.04
VPS4A-203ENST00000564399 VPS53Q5VIR6 699 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 MYSM1Q5VVJ2 828 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 KCNV1Q6PIU1 500 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 MIER1Q8N108 512 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 APBB2Q92870 758 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 TTC14Q96N46 770 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 OSBPL7Q9BZF2 842 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 MAF1Q9H063 256 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 IRF2BPLQ9H1B7 796 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 RNPEPQ9H4A4 650 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 MLXIPQ9HAP2 919 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 ALG13Q9NP73 1137 aaKnown RBP8.55□□□□□ -1.04
VPS4A-203ENST00000564399 PXMP2Q9NR77 195 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 MRPL11Q9Y3B7 192 aaKnown RBP8.55□□□□□ -1.04
VPS4A-203ENST00000564399 CFAP54Q96N23 3096 aa8.55□□□□□ -1.04
VPS4A-203ENST00000564399 TTC41PQ6P2S7 1318 aa8.54□□□□□ -1.04
VPS4A-203ENST00000564399 CACNA1GO43497 2377 aa8.54□□□□□ -1.04
VPS4A-203ENST00000564399 DOCK5Q9H7D0 1870 aa8.54□□□□□ -1.04
VPS4A-203ENST00000564399 H3BRB1 525 aa8.54□□□□□ -1.04
VPS4A-203ENST00000564399 CAND2O75155 1236 aa8.54□□□□□ -1.04
VPS4A-203ENST00000564399 SNHG28P0DPA3 235 aa8.54□□□□□ -1.04
VPS4A-203ENST00000564399 HSPD1P10809 573 aaKnown RBP8.54□□□□□ -1.04
VPS4A-203ENST00000564399 GNAT1P11488 350 aa8.54□□□□□ -1.04
VPS4A-203ENST00000564399 HOXD8P13378 290 aaPredicted RBP8.54□□□□□ -1.04
VPS4A-203ENST00000564399 RRP1P56182 461 aaKnown RBP8.54□□□□□ -1.04
VPS4A-203ENST00000564399 HAND2P61296 217 aa8.54□□□□□ -1.04
VPS4A-203ENST00000564399 BTG3Q14201 252 aaPredicted RBP8.54□□□□□ -1.04
VPS4A-203ENST00000564399 ALX1Q15699 326 aa8.54□□□□□ -1.04
VPS4A-203ENST00000564399 QRICH1Q2TAL8 776 aa8.54□□□□□ -1.04
VPS4A-203ENST00000564399 MFSD6Q6ZSS7 791 aa8.54□□□□□ -1.04
VPS4A-203ENST00000564399 ADGRF4Q8IZF3 695 aa8.54□□□□□ -1.04
VPS4A-203ENST00000564399 C16orf70Q9BSU1 422 aa8.54□□□□□ -1.04
VPS4A-203ENST00000564399 TUT1Q9H6E5 874 aaKnown RBP8.54□□□□□ -1.04
VPS4A-203ENST00000564399 DCTPP1Q9H773 170 aa8.54□□□□□ -1.04
VPS4A-203ENST00000564399 VAT1LQ9HCJ6 419 aa8.54□□□□□ -1.04
VPS4A-203ENST00000564399 ADGRA3Q8IWK6 1321 aa8.54□□□□□ -1.04
VPS4A-203ENST00000564399 COL4A6Q14031 1691 aa8.53□□□□□ -1.04
VPS4A-203ENST00000564399 CACNA1BQ00975 2339 aa8.53□□□□□ -1.04
VPS4A-203ENST00000564399 LOC730098B7Z3J9 87 aa8.53□□□□□ -1.04
VPS4A-203ENST00000564399 NOP56O00567 594 aaKnown RBP8.53□□□□□ -1.04
VPS4A-203ENST00000564399 RGS20O76081 388 aa8.53□□□□□ -1.04
VPS4A-203ENST00000564399 EYA4O95677 639 aa8.53□□□□□ -1.04
VPS4A-203ENST00000564399 FGAP02671 866 aa8.53□□□□□ -1.04
VPS4A-203ENST00000564399 MMP1P03956 469 aa8.53□□□□□ -1.04
VPS4A-203ENST00000564399 LGALS2P05162 132 aa8.53□□□□□ -1.04
VPS4A-203ENST00000564399 AVPR2P30518 371 aa8.53□□□□□ -1.04
VPS4A-203ENST00000564399 VCPP55072 806 aaKnown RBP8.53□□□□□ -1.04
VPS4A-203ENST00000564399 SIGLEC14Q08ET2 396 aa8.53□□□□□ -1.04
VPS4A-203ENST00000564399 PI4K2BQ8TCG2 481 aa8.53□□□□□ -1.04
VPS4A-203ENST00000564399 ZFP91Q96JP5 570 aaPredicted RBP8.53□□□□□ -1.04
VPS4A-203ENST00000564399 MSLNLQ96KJ4 702 aa8.53□□□□□ -1.04
VPS4A-203ENST00000564399 RPGRIP1Q96KN7 1286 aa8.53□□□□□ -1.04
VPS4A-203ENST00000564399 PDCD2LQ9BRP1 358 aa8.53□□□□□ -1.04
VPS4A-203ENST00000564399 ZKSCAN3Q9BRR0 538 aa8.53□□□□□ -1.04
VPS4A-203ENST00000564399 PLVAPQ9BX97 442 aa8.53□□□□□ -1.04
VPS4A-203ENST00000564399 FOXD4L1Q9NU39 408 aa8.53□□□□□ -1.04
VPS4A-203ENST00000564399 SETD4Q9NVD3 440 aa8.53□□□□□ -1.04
VPS4A-203ENST00000564399 PLAGL2Q9UPG8 496 aa8.53□□□□□ -1.04
VPS4A-203ENST00000564399 EP300Q09472 2414 aaPredicted RBP8.53□□□□□ -1.04
VPS4A-203ENST00000564399 CCDC171Q6TFL3 1326 aa8.53□□□□□ -1.04
VPS4A-203ENST00000564399 LOXHD1Q8IVV2 1947 aa8.52□□□□□ -1.04
VPS4A-203ENST00000564399 GVINP1Q7Z2Y8 2422 aa8.52□□□□□ -1.05
VPS4A-203ENST00000564399 H0Y858 1186 aa8.52□□□□□ -1.05
VPS4A-203ENST00000564399 KDM4AO75164 1064 aa8.52□□□□□ -1.05
VPS4A-203ENST00000564399 LINC00271P0C7V0 271 aa8.52□□□□□ -1.05
VPS4A-203ENST00000564399 TGFB3P10600 412 aa8.52□□□□□ -1.05
VPS4A-203ENST00000564399 GHRP10912 638 aa8.52□□□□□ -1.05
VPS4A-203ENST00000564399 UBA1P22314 1058 aaKnown RBP8.52□□□□□ -1.05
VPS4A-203ENST00000564399 NRIP1P48552 1158 aa8.52□□□□□ -1.05
VPS4A-203ENST00000564399 ARHGAP4P98171 946 aa8.52□□□□□ -1.05
VPS4A-203ENST00000564399 SP2Q02086 613 aa8.52□□□□□ -1.05
VPS4A-203ENST00000564399 ADGRD2Q7Z7M1 963 aa8.52□□□□□ -1.05
VPS4A-203ENST00000564399 ZBTB33Q86T24 672 aa8.52□□□□□ -1.05
VPS4A-203ENST00000564399 RBM23Q86U06 439 aaKnown RBP8.52□□□□□ -1.05
VPS4A-203ENST00000564399 VSIG10LQ86VR7 867 aa8.52□□□□□ -1.05
VPS4A-203ENST00000564399 EFHBQ8N7U6 833 aa8.52□□□□□ -1.05
VPS4A-203ENST00000564399 SMRP1Q8NCR6 262 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms