RNA–Protein interactions for RNA: ENST00000563790.5

HDGFL3-204, Transcript of HDGF like 3, humanhuman

TSL 3

Gene HDGFL3, Length 934 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-204ENST00000563790 SUCLG2Q96I99 432 aa13.07□□□□□ -0.32
HDGFL3-204ENST00000563790 NOL10Q9BSC4 688 aaKnown RBP13.07□□□□□ -0.32
HDGFL3-204ENST00000563790 VCPKMTQ9H867 229 aa13.07□□□□□ -0.32
HDGFL3-204ENST00000563790 KCNK12Q9HB15 430 aa13.07□□□□□ -0.32
HDGFL3-204ENST00000563790 SPATA6Q9NWH7 488 aaPredicted RBP13.07□□□□□ -0.32
HDGFL3-204ENST00000563790 CENPEQ02224 2701 aa13.06□□□□□ -0.32
HDGFL3-204ENST00000563790 UTP20O75691 2785 aaKnown RBP13.06□□□□□ -0.32
HDGFL3-204ENST00000563790 SHMT1P34896 483 aa13.06□□□□□ -0.32
HDGFL3-204ENST00000563790 TRIM26Q12899 539 aaPredicted RBP13.06□□□□□ -0.32
HDGFL3-204ENST00000563790 BTG3Q14201 252 aaPredicted RBP13.06□□□□□ -0.32
HDGFL3-204ENST00000563790 LPAL2Q16609 132 aa13.06□□□□□ -0.32
HDGFL3-204ENST00000563790 CCDC102BQ68D86 513 aa13.06□□□□□ -0.32
HDGFL3-204ENST00000563790 TSPYL6Q8N831 410 aa13.06□□□□□ -0.32
HDGFL3-204ENST00000563790 ZNF689Q96CS4 500 aaPredicted RBP13.06□□□□□ -0.32
HDGFL3-204ENST00000563790 AATFQ9NY61 560 aaKnown RBP eCLIP13.06□□□□□ -0.32
HDGFL3-204ENST00000563790 CA14Q9ULX7 337 aa13.06□□□□□ -0.32
HDGFL3-204ENST00000563790 NEUROG3Q9Y4Z2 214 aa13.06□□□□□ -0.32
HDGFL3-204ENST00000563790 KAT6AQ92794 2004 aa13.06□□□□□ -0.32
HDGFL3-204ENST00000563790 F5P12259 2224 aa13.05□□□□□ -0.32
HDGFL3-204ENST00000563790 LRBAP50851 2863 aa13.05□□□□□ -0.32
HDGFL3-204ENST00000563790 USP17L12C9JPN9 530 aa13.05□□□□□ -0.32
HDGFL3-204ENST00000563790 USP17L21D6R901 530 aa13.05□□□□□ -0.32
HDGFL3-204ENST00000563790 ATP2A1O14983 1001 aa13.05□□□□□ -0.32
HDGFL3-204ENST00000563790 PPP4CP60510 307 aa13.05□□□□□ -0.32
HDGFL3-204ENST00000563790 ZNF252P-AS1Q0IIN9 211 aa13.05□□□□□ -0.32
HDGFL3-204ENST00000563790 PTK7Q13308 1070 aa13.05□□□□□ -0.32
HDGFL3-204ENST00000563790 SLC4A10Q6U841 1118 aa13.05□□□□□ -0.32
HDGFL3-204ENST00000563790 KIAA1211Q6ZU35 1233 aa13.05□□□□□ -0.32
HDGFL3-204ENST00000563790 EEPD1Q7L9B9 569 aa13.05□□□□□ -0.32
HDGFL3-204ENST00000563790 ATG9AQ7Z3C6 839 aa13.05□□□□□ -0.32
HDGFL3-204ENST00000563790 SEPT8Q92599 483 aa13.05□□□□□ -0.32
HDGFL3-204ENST00000563790 WNT8BQ93098 351 aa13.05□□□□□ -0.32
HDGFL3-204ENST00000563790 FAM126AQ9BYI3 521 aaPredicted RBP13.05□□□□□ -0.32
HDGFL3-204ENST00000563790 VTA1Q9NP79 307 aa13.05□□□□□ -0.32
HDGFL3-204ENST00000563790 IFT57Q9NWB7 429 aa13.05□□□□□ -0.32
HDGFL3-204ENST00000563790 C9orf78Q9NZ63 289 aaPredicted RBP13.05□□□□□ -0.32
HDGFL3-204ENST00000563790 FBXO40Q9UH90 709 aa13.05□□□□□ -0.32
HDGFL3-204ENST00000563790 TMX2Q9Y320 296 aa13.05□□□□□ -0.32
HDGFL3-204ENST00000563790 A6NJR5 290 aa13.04□□□□□ -0.32
HDGFL3-204ENST00000563790 BAG3O95817 575 aa13.04□□□□□ -0.32
HDGFL3-204ENST00000563790 EVX2Q03828 476 aa13.04□□□□□ -0.32
HDGFL3-204ENST00000563790 TROAPQ12815 778 aa13.04□□□□□ -0.32
HDGFL3-204ENST00000563790 XRRA1Q6P2D8 792 aa13.04□□□□□ -0.32
HDGFL3-204ENST00000563790 CELF5Q8N6W0 485 aaKnown RBP13.04□□□□□ -0.32
HDGFL3-204ENST00000563790 MICAL1Q8TDZ2 1067 aa13.04□□□□□ -0.32
HDGFL3-204ENST00000563790 PURBQ96QR8 312 aaKnown RBP13.04□□□□□ -0.32
HDGFL3-204ENST00000563790 BICC1Q9H694 974 aaKnown RBP13.04□□□□□ -0.32
HDGFL3-204ENST00000563790 KCNK4Q9NYG8 393 aa13.04□□□□□ -0.32
HDGFL3-204ENST00000563790 IGSF9Q9P2J2 1179 aa13.04□□□□□ -0.32
HDGFL3-204ENST00000563790 GTF2IRD1Q9UHL9 959 aa13.04□□□□□ -0.32
HDGFL3-204ENST00000563790 RAD50Q92878 1312 aa13.04□□□□□ -0.32
HDGFL3-204ENST00000563790 AHCTF1Q8WYP5 2266 aa13.03□□□□□ -0.32
HDGFL3-204ENST00000563790 EYA2O00167 538 aa13.03□□□□□ -0.32
HDGFL3-204ENST00000563790 UBE3AQ05086 875 aa13.03□□□□□ -0.32
HDGFL3-204ENST00000563790 AASDHQ4L235 1098 aaPredicted RBP13.03□□□□□ -0.32
HDGFL3-204ENST00000563790 STPG1Q5TH74 334 aa13.03□□□□□ -0.32
HDGFL3-204ENST00000563790 KIAA1841Q6NSI8 718 aa13.03□□□□□ -0.32
HDGFL3-204ENST00000563790 OR6J1Q8NGC5 347 aa13.03□□□□□ -0.32
HDGFL3-204ENST00000563790 SLC39A7Q92504 469 aa13.03□□□□□ -0.32
HDGFL3-204ENST00000563790 FOXQ1Q9C009 403 aa13.03□□□□□ -0.32
HDGFL3-204ENST00000563790 DBR1Q9UK59 544 aaKnown RBP13.03□□□□□ -0.32
HDGFL3-204ENST00000563790 SRPK3Q9UPE1 567 aa13.03□□□□□ -0.32
HDGFL3-204ENST00000563790 MSRB2Q9Y3D2 182 aa13.03□□□□□ -0.32
HDGFL3-204ENST00000563790 DDX49Q9Y6V7 483 aaKnown RBP13.03□□□□□ -0.32
HDGFL3-204ENST00000563790 ZFHX3Q15911 3703 aa13.02□□□□□ -0.32
HDGFL3-204ENST00000563790 TSC2P49815 1807 aa13.02□□□□□ -0.32
HDGFL3-204ENST00000563790 USP9YO00507 2555 aaPredicted RBP13.02□□□□□ -0.32
HDGFL3-204ENST00000563790 LRRN2O75325 713 aa13.02□□□□□ -0.33
HDGFL3-204ENST00000563790 NOVA1P51513 510 aaKnown RBP13.02□□□□□ -0.33
HDGFL3-204ENST00000563790 GNAI1P63096 354 aa13.02□□□□□ -0.33
HDGFL3-204ENST00000563790 PDE12Q6L8Q7 609 aaKnown RBP13.02□□□□□ -0.33
HDGFL3-204ENST00000563790 LLGL2Q6P1M3 1020 aa13.02□□□□□ -0.33
HDGFL3-204ENST00000563790 RUFY4Q6ZNE9 571 aa13.02□□□□□ -0.33
HDGFL3-204ENST00000563790 SIAH1Q8IUQ4 282 aa13.02□□□□□ -0.33
HDGFL3-204ENST00000563790 ANKRD44Q8N8A2 993 aa13.02□□□□□ -0.33
HDGFL3-204ENST00000563790 CHST13Q8NET6 341 aa13.02□□□□□ -0.33
HDGFL3-204ENST00000563790 ACSF2Q96CM8 615 aaPredicted RBP13.02□□□□□ -0.33
HDGFL3-204ENST00000563790 LRIG1Q96JA1 1093 aa13.02□□□□□ -0.33
HDGFL3-204ENST00000563790 UBL7Q96S82 380 aaPredicted RBP13.02□□□□□ -0.33
HDGFL3-204ENST00000563790 BCO2Q9BYV7 579 aa13.02□□□□□ -0.33
HDGFL3-204ENST00000563790 SH2D4AQ9H788 454 aa13.02□□□□□ -0.33
HDGFL3-204ENST00000563790 ARHGEF3Q9NR81 526 aa13.02□□□□□ -0.33
HDGFL3-204ENST00000563790 MRPL42Q9Y6G3 142 aaKnown RBP13.02□□□□□ -0.33
HDGFL3-204ENST00000563790 MYH4Q9Y623 1939 aa13.01□□□□□ -0.33
HDGFL3-204ENST00000563790 RSPH10B2B2RC85 870 aa13.01□□□□□ -0.33
HDGFL3-204ENST00000563790 GIPC1O14908 333 aa13.01□□□□□ -0.33
HDGFL3-204ENST00000563790 RSPH10BP0C881 870 aa13.01□□□□□ -0.33
HDGFL3-204ENST00000563790 CHMP4BP1P59074 171 aa13.01□□□□□ -0.33
HDGFL3-204ENST00000563790 WDR11Q9BZH6 1224 aa13.01□□□□□ -0.33
HDGFL3-204ENST00000563790 ARHGEF10LQ9HCE6 1279 aa13.01□□□□□ -0.33
HDGFL3-204ENST00000563790 RAI14Q9P0K7 980 aa13.01□□□□□ -0.33
HDGFL3-204ENST00000563790 SRFP11831 508 aa13□□□□□ -0.33
HDGFL3-204ENST00000563790 ADORA1P30542 326 aa13□□□□□ -0.33
HDGFL3-204ENST00000563790 RIPPLY3P57055 190 aa13□□□□□ -0.33
HDGFL3-204ENST00000563790 ZNF843Q8N446 348 aa13□□□□□ -0.33
HDGFL3-204ENST00000563790 CASP10Q92851 521 aa13□□□□□ -0.33
HDGFL3-204ENST00000563790 MYL10Q9BUA6 226 aa13□□□□□ -0.33
HDGFL3-204ENST00000563790 PRMT8Q9NR22 394 aaPredicted RBP13□□□□□ -0.33
HDGFL3-204ENST00000563790 RBM47A0AV96 593 aaKnown RBP12.99□□□□□ -0.33
HDGFL3-204ENST00000563790 MPHOSPH10O00566 681 aaKnown RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms