RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 STAT6P42226 847 aa10.05□□□□□ -0.8
VPS39-207ENST00000563692 TXKP42681 527 aa10.05□□□□□ -0.8
VPS39-207ENST00000563692 SNAP25P60880 206 aa10.05□□□□□ -0.8
VPS39-207ENST00000563692 PLCB2Q00722 1185 aa10.05□□□□□ -0.8
VPS39-207ENST00000563692 MDM2Q00987 491 aaPredicted RBP10.05□□□□□ -0.8
VPS39-207ENST00000563692 PNOCQ13519 176 aa10.05□□□□□ -0.8
VPS39-207ENST00000563692 IL17AQ16552 155 aa10.05□□□□□ -0.8
VPS39-207ENST00000563692 CT47A1Q5JQC4 288 aaPredicted RBP10.05□□□□□ -0.8
VPS39-207ENST00000563692 SNRNP48Q6IEG0 339 aaKnown RBP10.05□□□□□ -0.8
VPS39-207ENST00000563692 USP49Q70CQ1 688 aa10.05□□□□□ -0.8
VPS39-207ENST00000563692 SLFN12Q8IYM2 578 aa10.05□□□□□ -0.8
VPS39-207ENST00000563692 CPXCR1Q8N123 301 aa10.05□□□□□ -0.8
VPS39-207ENST00000563692 DIS3LQ8TF46 1054 aaKnown RBP10.05□□□□□ -0.8
VPS39-207ENST00000563692 CALML4Q96GE6 196 aa10.05□□□□□ -0.8
VPS39-207ENST00000563692 PAGE5Q96GU1 130 aa10.05□□□□□ -0.8
VPS39-207ENST00000563692 MTMR9Q96QG7 549 aa10.05□□□□□ -0.8
VPS39-207ENST00000563692 ANO3Q9BYT9 981 aa10.05□□□□□ -0.8
VPS39-207ENST00000563692 TMEM60Q9H2L4 133 aa10.05□□□□□ -0.8
VPS39-207ENST00000563692 CUEDC2Q9H467 287 aa10.05□□□□□ -0.8
VPS39-207ENST00000563692 MAGEF1Q9HAY2 307 aa10.05□□□□□ -0.8
VPS39-207ENST00000563692 MAP3K20Q9NYL2 800 aaKnown RBP10.05□□□□□ -0.8
VPS39-207ENST00000563692 FLRT1Q9NZU1 646 aa10.05□□□□□ -0.8
VPS39-207ENST00000563692 DDX20Q9UHI6 824 aaKnown RBP10.05□□□□□ -0.8
VPS39-207ENST00000563692 PCDHA5Q9Y5H7 936 aa10.05□□□□□ -0.8
VPS39-207ENST00000563692 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.04□□□□□ -0.8
VPS39-207ENST00000563692 SLC26A4O43511 780 aa10.04□□□□□ -0.8
VPS39-207ENST00000563692 COBLO75128 1261 aa10.04□□□□□ -0.8
VPS39-207ENST00000563692 SLC34A2O95436 690 aa10.04□□□□□ -0.8
VPS39-207ENST00000563692 ICAM1P05362 532 aa10.04□□□□□ -0.8
VPS39-207ENST00000563692 MYL1P05976 194 aa10.04□□□□□ -0.8
VPS39-207ENST00000563692 ZNF76P36508 570 aa10.04□□□□□ -0.8
VPS39-207ENST00000563692 TECP42680 631 aa10.04□□□□□ -0.8
VPS39-207ENST00000563692 FXR2P51116 673 aaKnown RBP eCLIP10.04□□□□□ -0.8
VPS39-207ENST00000563692 AMPD3Q01432 767 aa10.04□□□□□ -0.8
VPS39-207ENST00000563692 SEMA3FQ13275 785 aa10.04□□□□□ -0.8
VPS39-207ENST00000563692 HABP4Q5JVS0 413 aaKnown RBP10.04□□□□□ -0.8
VPS39-207ENST00000563692 NT5DC1Q5TFE4 455 aa10.04□□□□□ -0.8
VPS39-207ENST00000563692 CABP7Q86V35 215 aa10.04□□□□□ -0.8
VPS39-207ENST00000563692 MLKLQ8NB16 471 aa10.04□□□□□ -0.8
VPS39-207ENST00000563692 GSDMAQ96QA5 445 aa10.04□□□□□ -0.8
VPS39-207ENST00000563692 LRRC27Q9C0I9 530 aa10.04□□□□□ -0.8
VPS39-207ENST00000563692 RMND1Q9NWS8 449 aa10.04□□□□□ -0.8
VPS39-207ENST00000563692 LRWD1Q9UFC0 647 aa10.04□□□□□ -0.8
VPS39-207ENST00000563692 FBXO40Q9UH90 709 aa10.04□□□□□ -0.8
VPS39-207ENST00000563692 ZNF214Q9UL59 606 aaPredicted RBP10.04□□□□□ -0.8
VPS39-207ENST00000563692 PCDHA12Q9UN75 941 aa10.04□□□□□ -0.8
VPS39-207ENST00000563692 BIN1O00499 593 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 ATP2A1O14983 1001 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 TBX3O15119 743 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 GTPBP6O43824 516 aaPredicted RBP10.03□□□□□ -0.8
VPS39-207ENST00000563692 TDP2O95551 362 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 ADCY5O95622 1261 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 CFBP00751 764 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 MYCNP04198 464 aaPredicted RBP10.03□□□□□ -0.8
VPS39-207ENST00000563692 CYP3A4P08684 503 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 AFMP43652 599 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 SARSP49591 514 aaKnown RBP10.03□□□□□ -0.8
VPS39-207ENST00000563692 OAZ1P54368 228 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 ARHGAP4P98171 946 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 IQCB1Q15051 598 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 Q4G0T1 1027 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 HS1BP3Q53T59 392 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 KRT79Q5XKE5 535 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 SH3RF1Q7Z6J0 888 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 LUZP1Q86V48 1076 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 POTEDQ86YR6 584 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 C7orf61Q8IZ16 206 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 IGSF22Q8N9C0 903 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 ARRDC4Q8NCT1 418 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 ERCC4Q92889 916 aaPredicted RBP10.03□□□□□ -0.8
VPS39-207ENST00000563692 CCDC47Q96A33 483 aaKnown RBP10.03□□□□□ -0.8
VPS39-207ENST00000563692 CDK5RAP3Q96JB5 506 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 MAML3Q96JK9 1138 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 GTPBP4Q9BZE4 634 aaKnown RBP10.03□□□□□ -0.8
VPS39-207ENST00000563692 DISC1Q9NRI5 854 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 NRBP1Q9UHY1 535 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 CCPG1Q9ULG6 757 aa10.03□□□□□ -0.8
VPS39-207ENST00000563692 DIS3Q9Y2L1 958 aaKnown RBP10.03□□□□□ -0.8
VPS39-207ENST00000563692 GOLGA6L6A8MZA4 724 aa10.02□□□□□ -0.81
VPS39-207ENST00000563692 KBTBD13C9JR72 458 aa10.02□□□□□ -0.81
VPS39-207ENST00000563692 SEPT4O43236 478 aa10.02□□□□□ -0.81
VPS39-207ENST00000563692 PTMAP06454 111 aaKnown RBP10.02□□□□□ -0.81
VPS39-207ENST00000563692 PGK2P07205 417 aa10.02□□□□□ -0.81
VPS39-207ENST00000563692 CYBAP13498 195 aa10.02□□□□□ -0.81
VPS39-207ENST00000563692 CIITAP33076 1130 aa10.02□□□□□ -0.81
VPS39-207ENST00000563692 SREBF1P36956 1147 aa10.02□□□□□ -0.81
VPS39-207ENST00000563692 E2F4Q16254 413 aa10.02□□□□□ -0.81
VPS39-207ENST00000563692 LHX8Q68G74 356 aa10.02□□□□□ -0.81
VPS39-207ENST00000563692 CHRDL2Q6WN34 429 aa10.02□□□□□ -0.81
VPS39-207ENST00000563692 C11orf57Q6ZUT1 292 aaPredicted RBP10.02□□□□□ -0.81
VPS39-207ENST00000563692 FCHSD1Q86WN1 690 aa10.02□□□□□ -0.81
VPS39-207ENST00000563692 ANKRD35Q8N283 1001 aa10.02□□□□□ -0.81
VPS39-207ENST00000563692 MSL3Q8N5Y2 521 aaKnown RBP10.02□□□□□ -0.81
VPS39-207ENST00000563692 CHST13Q8NET6 341 aa10.02□□□□□ -0.81
VPS39-207ENST00000563692 REPS2Q8NFH8 660 aa10.02□□□□□ -0.81
VPS39-207ENST00000563692 ERMNQ8TAM6 284 aa10.02□□□□□ -0.81
VPS39-207ENST00000563692 SPATA20Q8TB22 786 aa10.02□□□□□ -0.81
VPS39-207ENST00000563692 PDLIM2Q96JY6 352 aa10.02□□□□□ -0.81
VPS39-207ENST00000563692 FAM20AQ96MK3 541 aa10.02□□□□□ -0.81
VPS39-207ENST00000563692 MBOAT7Q96N66 472 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms