RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 PTK7Q13308 1070 aa19.31■□□□□ 0.68
CLK3-210ENST00000563112 ERICH6BQ5W0A0 696 aa19.31■□□□□ 0.68
CLK3-210ENST00000563112 C16orf70Q9BSU1 422 aa19.31■□□□□ 0.68
CLK3-210ENST00000563112 BCAS3Q9H6U6 928 aa19.31■□□□□ 0.68
CLK3-210ENST00000563112 RIC8AQ9NPQ8 531 aa19.31■□□□□ 0.68
CLK3-210ENST00000563112 PPP4R2Q9NY27 417 aa19.31■□□□□ 0.68
CLK3-210ENST00000563112 TRIP12Q14669 1992 aaPredicted RBP19.31■□□□□ 0.68
CLK3-210ENST00000563112 RPS6KB1P23443 525 aa19.3■□□□□ 0.68
CLK3-210ENST00000563112 CDC27P30260 824 aa19.3■□□□□ 0.68
CLK3-210ENST00000563112 ADCY7P51828 1080 aa19.3■□□□□ 0.68
CLK3-210ENST00000563112 LRRC8DQ7L1W4 858 aa19.3■□□□□ 0.68
CLK3-210ENST00000563112 GPR20Q99678 358 aa19.3■□□□□ 0.68
CLK3-210ENST00000563112 ZNF576Q9H609 170 aa19.3■□□□□ 0.68
CLK3-210ENST00000563112 FAM217BQ9NTX9 383 aaPredicted RBP19.3■□□□□ 0.68
CLK3-210ENST00000563112 BARHL2Q9NY43 387 aa19.3■□□□□ 0.68
CLK3-210ENST00000563112 SCN5AQ14524 2016 aa19.29■□□□□ 0.68
CLK3-210ENST00000563112 C17orf102A2RUQ5 167 aa19.29■□□□□ 0.68
CLK3-210ENST00000563112 SMCO2A6NFE2 343 aa19.29■□□□□ 0.68
CLK3-210ENST00000563112 MAFGO15525 162 aa19.29■□□□□ 0.68
CLK3-210ENST00000563112 ADD1P35611 737 aaKnown RBP19.29■□□□□ 0.68
CLK3-210ENST00000563112 PBX2P40425 430 aa19.29■□□□□ 0.68
CLK3-210ENST00000563112 SP4Q02446 784 aa19.29■□□□□ 0.68
CLK3-210ENST00000563112 RBL2Q08999 1139 aa19.29■□□□□ 0.68
CLK3-210ENST00000563112 FBXL16Q8N461 479 aa19.29■□□□□ 0.68
CLK3-210ENST00000563112 MYLIPQ8WY64 445 aa19.29■□□□□ 0.68
CLK3-210ENST00000563112 VWCEQ96DN2 955 aa19.29■□□□□ 0.68
CLK3-210ENST00000563112 CTAGE1Q96RT6 745 aa19.29■□□□□ 0.68
CLK3-210ENST00000563112 ZNF215Q9UL58 517 aaPredicted RBP19.29■□□□□ 0.68
CLK3-210ENST00000563112 UBIAD1Q9Y5Z9 338 aa19.29■□□□□ 0.68
CLK3-210ENST00000563112 GNAT1P11488 350 aa19.28■□□□□ 0.68
CLK3-210ENST00000563112 CKBP12277 381 aa19.28■□□□□ 0.68
CLK3-210ENST00000563112 FOSL2P15408 326 aa19.28■□□□□ 0.68
CLK3-210ENST00000563112 ATP2A2P16615 1042 aaKnown RBP19.28■□□□□ 0.68
CLK3-210ENST00000563112 ITGB5P18084 799 aa19.28■□□□□ 0.68
CLK3-210ENST00000563112 AKAP17AQ02040 695 aaKnown RBP19.28■□□□□ 0.68
CLK3-210ENST00000563112 MTMR1Q13613 665 aa19.28■□□□□ 0.68
CLK3-210ENST00000563112 UTP14CQ5TAP6 766 aaKnown RBP19.28■□□□□ 0.68
CLK3-210ENST00000563112 DHX38Q92620 1227 aaKnown RBP19.28■□□□□ 0.68
CLK3-210ENST00000563112 SLC28A3Q9HAS3 691 aa19.28■□□□□ 0.68
CLK3-210ENST00000563112 TANC1Q9C0D5 1861 aa19.28■□□□□ 0.68
CLK3-210ENST00000563112 COL6A3P12111 3177 aa19.28■□□□□ 0.68
CLK3-210ENST00000563112 DOCK5Q9H7D0 1870 aa19.27■□□□□ 0.68
CLK3-210ENST00000563112 STXBP3O00186 592 aa19.27■□□□□ 0.68
CLK3-210ENST00000563112 SMIM10L2AP0DMW4 78 aa19.27■□□□□ 0.68
CLK3-210ENST00000563112 SMIM10L2BP0DMW5 78 aa19.27■□□□□ 0.68
CLK3-210ENST00000563112 ZNF200P98182 395 aaPredicted RBP19.27■□□□□ 0.68
CLK3-210ENST00000563112 AP3B2Q13367 1082 aa19.27■□□□□ 0.68
CLK3-210ENST00000563112 GRIN2CQ14957 1233 aa19.27■□□□□ 0.68
CLK3-210ENST00000563112 PFKFB3Q16875 520 aaPredicted RBP19.27■□□□□ 0.68
CLK3-210ENST00000563112 TYW1BQ6NUM6 668 aa19.27■□□□□ 0.68
CLK3-210ENST00000563112 CCDC12Q8WUD4 166 aaPredicted RBP19.27■□□□□ 0.68
CLK3-210ENST00000563112 ATP6V0A1Q93050 837 aa19.27■□□□□ 0.68
CLK3-210ENST00000563112 JADE2Q9NQC1 790 aa19.27■□□□□ 0.68
CLK3-210ENST00000563112 ATP9AO75110 1047 aa19.26■□□□□ 0.67
CLK3-210ENST00000563112 BAIAP3O94812 1187 aa19.26■□□□□ 0.67
CLK3-210ENST00000563112 SCG2P13521 617 aa19.26■□□□□ 0.67
CLK3-210ENST00000563112 KCNA2P16389 499 aa19.26■□□□□ 0.67
CLK3-210ENST00000563112 SERINC5Q86VE9 423 aa19.26■□□□□ 0.67
CLK3-210ENST00000563112 PHOSPHO2Q8TCD6 241 aa19.26■□□□□ 0.67
CLK3-210ENST00000563112 SEPT1Q8WYJ6 367 aa19.26■□□□□ 0.67
CLK3-210ENST00000563112 SLC9A7Q96T83 725 aa19.26■□□□□ 0.67
CLK3-210ENST00000563112 MXRA8Q9BRK3 442 aa19.26■□□□□ 0.67
CLK3-210ENST00000563112 ANO3Q9BYT9 981 aa19.26■□□□□ 0.67
CLK3-210ENST00000563112 AGXT2Q9BYV1 514 aa19.26■□□□□ 0.67
CLK3-210ENST00000563112 NKX2-4Q9H2Z4 354 aa19.26■□□□□ 0.67
CLK3-210ENST00000563112 RNPEPQ9H4A4 650 aa19.26■□□□□ 0.67
CLK3-210ENST00000563112 PKD2L1Q9P0L9 805 aa19.26■□□□□ 0.67
CLK3-210ENST00000563112 PCDHA11Q9Y5I1 949 aa19.26■□□□□ 0.67
CLK3-210ENST00000563112 MYO9BQ13459 2157 aa19.26■□□□□ 0.67
CLK3-210ENST00000563112 PRPF3O43395 683 aaKnown RBP19.25■□□□□ 0.67
CLK3-210ENST00000563112 TCF7P36402 384 aaPredicted RBP19.25■□□□□ 0.67
CLK3-210ENST00000563112 KCNJ6P48051 423 aa19.25■□□□□ 0.67
CLK3-210ENST00000563112 TRIM71Q2Q1W2 868 aaKnown RBP19.25■□□□□ 0.67
CLK3-210ENST00000563112 MCTP2Q6DN12 878 aa19.25■□□□□ 0.67
CLK3-210ENST00000563112 RUFY3Q7L099 469 aa19.25■□□□□ 0.67
CLK3-210ENST00000563112 MAFAQ8NHW3 353 aaPredicted RBP19.25■□□□□ 0.67
CLK3-210ENST00000563112 GAS2L1Q99501 681 aaPredicted RBP19.25■□□□□ 0.67
CLK3-210ENST00000563112 C6orf50Q9HD87 102 aa19.25■□□□□ 0.67
CLK3-210ENST00000563112 CYP46A1Q9Y6A2 500 aa19.25■□□□□ 0.67
CLK3-210ENST00000563112 TET1Q8NFU7 2136 aa19.24■□□□□ 0.67
CLK3-210ENST00000563112 NID2Q14112 1375 aa19.24■□□□□ 0.67
CLK3-210ENST00000563112 KIF28PB7ZC32 967 aa19.24■□□□□ 0.67
CLK3-210ENST00000563112 ZNF76P36508 570 aa19.24■□□□□ 0.67
CLK3-210ENST00000563112 THPOP40225 353 aa19.24■□□□□ 0.67
CLK3-210ENST00000563112 RABGGTBP53611 331 aa19.24■□□□□ 0.67
CLK3-210ENST00000563112 ZNF618Q5T7W0 954 aa19.24■□□□□ 0.67
CLK3-210ENST00000563112 CNKSR3Q6P9H4 555 aa19.24■□□□□ 0.67
CLK3-210ENST00000563112 TRIM50Q86XT4 487 aa19.24■□□□□ 0.67
CLK3-210ENST00000563112 PGBD1Q96JS3 809 aa19.24■□□□□ 0.67
CLK3-210ENST00000563112 ZSWIM6Q9HCJ5 1215 aa19.24■□□□□ 0.67
CLK3-210ENST00000563112 KCNH7Q9NS40 1196 aa19.24■□□□□ 0.67
CLK3-210ENST00000563112 RSPH10B2B2RC85 870 aa19.23■□□□□ 0.67
CLK3-210ENST00000563112 TREHO43280 583 aa19.23■□□□□ 0.67
CLK3-210ENST00000563112 CXCL10P02778 98 aa19.23■□□□□ 0.67
CLK3-210ENST00000563112 CENPBP07199 599 aaPredicted RBP19.23■□□□□ 0.67
CLK3-210ENST00000563112 RSPH10BP0C881 870 aa19.23■□□□□ 0.67
CLK3-210ENST00000563112 HOXC8P31273 242 aa19.23■□□□□ 0.67
CLK3-210ENST00000563112 HIC1Q14526 733 aa19.23■□□□□ 0.67
CLK3-210ENST00000563112 CEP55Q53EZ4 464 aa19.23■□□□□ 0.67
CLK3-210ENST00000563112 GLG1Q92896 1179 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms