RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 TGFB3P10600 412 aa18.73■□□□□ 0.59
VPS4A-202ENST00000562754 FXR2P51116 673 aaKnown RBP eCLIP18.73■□□□□ 0.59
VPS4A-202ENST00000562754 CACNB2Q08289 660 aaPredicted RBP18.73■□□□□ 0.59
VPS4A-202ENST00000562754 TTLL4Q14679 1199 aa18.73■□□□□ 0.59
VPS4A-202ENST00000562754 LY6KQ17RY6 165 aa18.73■□□□□ 0.59
VPS4A-202ENST00000562754 CCDC144BQ3MJ40 725 aa18.73■□□□□ 0.59
VPS4A-202ENST00000562754 AXDND1Q5T1B0 1012 aaPredicted RBP18.73■□□□□ 0.59
VPS4A-202ENST00000562754 GJC2Q5T442 439 aaPredicted RBP18.73■□□□□ 0.59
VPS4A-202ENST00000562754 MAP3K21Q5TCX8 1036 aa18.73■□□□□ 0.59
VPS4A-202ENST00000562754 B3GNT9Q6UX72 402 aa18.73■□□□□ 0.59
VPS4A-202ENST00000562754 CTU1Q7Z7A3 348 aaKnown RBP18.73■□□□□ 0.59
VPS4A-202ENST00000562754 KRI1Q8N9T8 703 aaKnown RBP18.73■□□□□ 0.59
VPS4A-202ENST00000562754 COPS5Q92905 334 aa18.73■□□□□ 0.59
VPS4A-202ENST00000562754 FERMT2Q96AC1 680 aa18.73■□□□□ 0.59
VPS4A-202ENST00000562754 TTC12Q9H892 705 aaPredicted RBP18.73■□□□□ 0.59
VPS4A-202ENST00000562754 NRBP1Q9UHY1 535 aa18.73■□□□□ 0.59
VPS4A-202ENST00000562754 PCDHA7Q9UN72 937 aa18.73■□□□□ 0.59
VPS4A-202ENST00000562754 POTEMA6NI47 508 aa18.72■□□□□ 0.59
VPS4A-202ENST00000562754 DDX39AO00148 427 aaKnown RBP18.72■□□□□ 0.59
VPS4A-202ENST00000562754 SORBS3O60504 671 aa18.72■□□□□ 0.59
VPS4A-202ENST00000562754 TXNP10599 105 aaKnown RBP18.72■□□□□ 0.59
VPS4A-202ENST00000562754 PRKAR2AP13861 404 aaKnown RBP18.72■□□□□ 0.59
VPS4A-202ENST00000562754 SMPD1P17405 629 aa18.72■□□□□ 0.59
VPS4A-202ENST00000562754 GRK4P32298 578 aa18.72■□□□□ 0.59
VPS4A-202ENST00000562754 ME1P48163 572 aa18.72■□□□□ 0.59
VPS4A-202ENST00000562754 KCNV1Q6PIU1 500 aa18.72■□□□□ 0.59
VPS4A-202ENST00000562754 DTHD1Q6ZMT9 781 aa18.72■□□□□ 0.59
VPS4A-202ENST00000562754 LENG1Q96BZ8 264 aaPredicted RBP18.72■□□□□ 0.59
VPS4A-202ENST00000562754 SENP7Q9BQF6 1050 aa18.72■□□□□ 0.59
VPS4A-202ENST00000562754 TEKT3Q9BXF9 490 aa18.72■□□□□ 0.59
VPS4A-202ENST00000562754 UNC45AQ9H3U1 944 aa18.72■□□□□ 0.59
VPS4A-202ENST00000562754 TBC1D22BQ9NU19 505 aa18.72■□□□□ 0.59
VPS4A-202ENST00000562754 TELO2Q9Y4R8 837 aa18.72■□□□□ 0.59
VPS4A-202ENST00000562754 CUTAO60888 179 aa18.71■□□□□ 0.59
VPS4A-202ENST00000562754 FARP2O94887 1054 aaPredicted RBP18.71■□□□□ 0.59
VPS4A-202ENST00000562754 GGPS1O95749 300 aa18.71■□□□□ 0.59
VPS4A-202ENST00000562754 CCNE2O96020 404 aa18.71■□□□□ 0.59
VPS4A-202ENST00000562754 INHAP05111 366 aa18.71■□□□□ 0.59
VPS4A-202ENST00000562754 TECP42680 631 aa18.71■□□□□ 0.59
VPS4A-202ENST00000562754 PPP2R5CQ13362 524 aa18.71■□□□□ 0.59
VPS4A-202ENST00000562754 IGSF22Q8N9C0 903 aa18.71■□□□□ 0.59
VPS4A-202ENST00000562754 SDF4Q9BRK5 362 aa18.71■□□□□ 0.59
VPS4A-202ENST00000562754 CSRNP2Q9H175 543 aa18.71■□□□□ 0.59
VPS4A-202ENST00000562754 PCDHA12Q9UN75 941 aa18.71■□□□□ 0.59
VPS4A-202ENST00000562754 WDR81Q562E7 1941 aa18.7■□□□□ 0.58
VPS4A-202ENST00000562754 PP2D1A8MPX8 630 aa18.7■□□□□ 0.58
VPS4A-202ENST00000562754 EML1O00423 815 aa18.7■□□□□ 0.58
VPS4A-202ENST00000562754 CCND3P30281 292 aaPredicted RBP18.7■□□□□ 0.58
VPS4A-202ENST00000562754 ARHGAP1Q07960 439 aa18.7■□□□□ 0.58
VPS4A-202ENST00000562754 NEDD9Q14511 834 aa18.7■□□□□ 0.58
VPS4A-202ENST00000562754 TMEM266Q2M3C6 531 aa18.7■□□□□ 0.58
VPS4A-202ENST00000562754 DUSP28Q4G0W2 176 aa18.7■□□□□ 0.58
VPS4A-202ENST00000562754 CELF3Q5SZQ8 465 aaKnown RBP18.7■□□□□ 0.58
VPS4A-202ENST00000562754 IQSEC1Q6DN90 963 aa18.7■□□□□ 0.58
VPS4A-202ENST00000562754 CYFIP1Q7L576 1253 aa18.7■□□□□ 0.58
VPS4A-202ENST00000562754 SH3TC2Q8TF17 1288 aa18.7■□□□□ 0.58
VPS4A-202ENST00000562754 JPH1Q9HDC5 661 aaPredicted RBP18.7■□□□□ 0.58
VPS4A-202ENST00000562754 FRMPD3Q5JV73 1810 aa18.7■□□□□ 0.58
VPS4A-202ENST00000562754 POTEFA5A3E0 1075 aa18.69■□□□□ 0.58
VPS4A-202ENST00000562754 CHMP2AO43633 222 aa18.69■□□□□ 0.58
VPS4A-202ENST00000562754 GADD45BO75293 160 aaPredicted RBP18.69■□□□□ 0.58
VPS4A-202ENST00000562754 LONP1P36776 959 aaKnown RBP18.69■□□□□ 0.58
VPS4A-202ENST00000562754 TNFAIP2Q03169 654 aa18.69■□□□□ 0.58
VPS4A-202ENST00000562754 CSPP1Q1MSJ5 1256 aa18.69■□□□□ 0.58
VPS4A-202ENST00000562754 SPECC1Q5M775 1068 aa18.69■□□□□ 0.58
VPS4A-202ENST00000562754 NCAPH2Q6IBW4 605 aa18.69■□□□□ 0.58
VPS4A-202ENST00000562754 SHC4Q6S5L8 630 aa18.69■□□□□ 0.58
VPS4A-202ENST00000562754 METTL7BQ6UX53 244 aa18.69■□□□□ 0.58
VPS4A-202ENST00000562754 USP49Q70CQ1 688 aa18.69■□□□□ 0.58
VPS4A-202ENST00000562754 SLC9A2Q9UBY0 812 aa18.69■□□□□ 0.58
VPS4A-202ENST00000562754 FAM184BQ9ULE4 1060 aa18.69■□□□□ 0.58
VPS4A-202ENST00000562754 GNEQ9Y223 722 aaKnown RBP18.69■□□□□ 0.58
VPS4A-202ENST00000562754 PRPF40AO75400 957 aaKnown RBP18.68■□□□□ 0.58
VPS4A-202ENST00000562754 GH1P01241 217 aa18.68■□□□□ 0.58
VPS4A-202ENST00000562754 AKR1A1P14550 325 aa18.68■□□□□ 0.58
VPS4A-202ENST00000562754 CDC25AP30304 524 aa18.68■□□□□ 0.58
VPS4A-202ENST00000562754 MCM4P33991 863 aa18.68■□□□□ 0.58
VPS4A-202ENST00000562754 KRT76Q01546 638 aa18.68■□□□□ 0.58
VPS4A-202ENST00000562754 SP4Q02446 784 aa18.68■□□□□ 0.58
VPS4A-202ENST00000562754 ADALQ6DHV7 355 aa18.68■□□□□ 0.58
VPS4A-202ENST00000562754 ZNF746Q6NUN9 644 aaPredicted RBP18.68■□□□□ 0.58
VPS4A-202ENST00000562754 ZNF579Q8NAF0 562 aaKnown RBP18.68■□□□□ 0.58
VPS4A-202ENST00000562754 GIMAP8Q8ND71 665 aaPredicted RBP18.68■□□□□ 0.58
VPS4A-202ENST00000562754 LMBRD1Q9NUN5 540 aa18.68■□□□□ 0.58
VPS4A-202ENST00000562754 HTTP42858 3142 aa18.67■□□□□ 0.58
VPS4A-202ENST00000562754 NKRFO15226 690 aaKnown RBP eCLIP18.67■□□□□ 0.58
VPS4A-202ENST00000562754 SEPT4O43236 478 aa18.67■□□□□ 0.58
VPS4A-202ENST00000562754 ACTR2P61160 394 aa18.67■□□□□ 0.58
VPS4A-202ENST00000562754 PDIA5Q14554 519 aa18.67■□□□□ 0.58
VPS4A-202ENST00000562754 TPRNQ4KMQ1 711 aa18.67■□□□□ 0.58
VPS4A-202ENST00000562754 RESP18Q5W5W9 173 aa18.67■□□□□ 0.58
VPS4A-202ENST00000562754 FBXO46Q6PJ61 603 aaPredicted RBP18.67■□□□□ 0.58
VPS4A-202ENST00000562754 DHX37Q8IY37 1157 aaKnown RBP18.67■□□□□ 0.58
VPS4A-202ENST00000562754 SYMPKQ92797 1274 aaKnown RBP18.67■□□□□ 0.58
VPS4A-202ENST00000562754 EMID1Q96A84 441 aaPredicted RBP18.67■□□□□ 0.58
VPS4A-202ENST00000562754 EPSTI1Q96J88 318 aa18.67■□□□□ 0.58
VPS4A-202ENST00000562754 AK8Q96MA6 479 aa18.67■□□□□ 0.58
VPS4A-202ENST00000562754 MMTAG2Q9BU76 263 aaKnown RBP18.67■□□□□ 0.58
VPS4A-202ENST00000562754 RAB34Q9BZG1 259 aa18.67■□□□□ 0.58
VPS4A-202ENST00000562754 MLXIPQ9HAP2 919 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 142.7 ms