RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 FAN1Q9Y2M0 1017 aa4.93□□□□□ -1.62
VPS35-203ENST00000562420 KCTD3Q9Y597 815 aa4.93□□□□□ -1.62
VPS35-203ENST00000562420 EIF5BO60841 1220 aaKnown RBP4.92□□□□□ -1.62
VPS35-203ENST00000562420 CYP2C8P10632 490 aa4.92□□□□□ -1.62
VPS35-203ENST00000562420 PI3P19957 117 aa4.92□□□□□ -1.62
VPS35-203ENST00000562420 LACTBP83111 547 aaPredicted RBP4.92□□□□□ -1.62
VPS35-203ENST00000562420 SSPNQ14714 243 aa4.92□□□□□ -1.62
VPS35-203ENST00000562420 GPR19Q15760 415 aa4.92□□□□□ -1.62
VPS35-203ENST00000562420 FIGNQ5HY92 759 aa4.92□□□□□ -1.62
VPS35-203ENST00000562420 LILRA6Q6PI73 481 aa4.92□□□□□ -1.62
VPS35-203ENST00000562420 BRAPQ7Z569 592 aa4.92□□□□□ -1.62
VPS35-203ENST00000562420 JAZF1Q86VZ6 243 aa4.92□□□□□ -1.62
VPS35-203ENST00000562420 NLGN4XQ8N0W4 816 aa4.92□□□□□ -1.62
VPS35-203ENST00000562420 LINC00482Q8N8I6 264 aa4.92□□□□□ -1.62
VPS35-203ENST00000562420 SCLYQ96I15 445 aa4.92□□□□□ -1.62
VPS35-203ENST00000562420 JAM3Q9BX67 310 aa4.92□□□□□ -1.62
VPS35-203ENST00000562420 KRTAP9-8Q9BYQ0 159 aa4.92□□□□□ -1.62
VPS35-203ENST00000562420 PLA2G2DQ9UNK4 145 aa4.92□□□□□ -1.62
VPS35-203ENST00000562420 TBX22Q9Y458 520 aa4.92□□□□□ -1.62
VPS35-203ENST00000562420 PCDHA8Q9Y5H6 950 aa4.92□□□□□ -1.62
VPS35-203ENST00000562420 TCRBV16S1A1N1A0A5B0 115 aa4.91□□□□□ -1.62
VPS35-203ENST00000562420 ESYT3A0FGR9 886 aa4.91□□□□□ -1.62
VPS35-203ENST00000562420 ASLP04424 464 aa4.91□□□□□ -1.62
VPS35-203ENST00000562420 C8BP07358 591 aa4.91□□□□□ -1.62
VPS35-203ENST00000562420 GJA4P35212 333 aa4.91□□□□□ -1.62
VPS35-203ENST00000562420 FOXO4P98177 505 aa4.91□□□□□ -1.62
VPS35-203ENST00000562420 CNKSR3Q6P9H4 555 aa4.91□□□□□ -1.62
VPS35-203ENST00000562420 KCTD1Q719H9 257 aa4.91□□□□□ -1.62
VPS35-203ENST00000562420 KIAA0907Q7Z7F0 614 aaPredicted RBP4.91□□□□□ -1.62
VPS35-203ENST00000562420 ZC3H7AQ8IWR0 971 aaKnown RBP4.91□□□□□ -1.62
VPS35-203ENST00000562420 LRRC56Q8IYG6 542 aaPredicted RBP4.91□□□□□ -1.62
VPS35-203ENST00000562420 SMARCC2Q8TAQ2 1214 aa4.91□□□□□ -1.62
VPS35-203ENST00000562420 TOE1Q96GM8 510 aaKnown RBP4.91□□□□□ -1.62
VPS35-203ENST00000562420 WRNIP1Q96S55 665 aa4.91□□□□□ -1.62
VPS35-203ENST00000562420 FEZ1Q99689 392 aa4.91□□□□□ -1.62
VPS35-203ENST00000562420 KANSL2Q9H9L4 492 aa4.91□□□□□ -1.62
VPS35-203ENST00000562420 DSEQ9UL01 958 aa4.91□□□□□ -1.62
VPS35-203ENST00000562420 SRPK3Q9UPE1 567 aa4.91□□□□□ -1.62
VPS35-203ENST00000562420 PLAAQ9Y263 795 aa4.91□□□□□ -1.62
VPS35-203ENST00000562420 PCDHA9Q9Y5H5 950 aa4.91□□□□□ -1.62
VPS35-203ENST00000562420 SH3D21A4FU49 640 aa4.9□□□□□ -1.63
VPS35-203ENST00000562420 ZNF561-AS1K7EIQ3 104 aa4.9□□□□□ -1.63
VPS35-203ENST00000562420 NUAK1O60285 661 aa4.9□□□□□ -1.63
VPS35-203ENST00000562420 CDC45O75419 566 aa4.9□□□□□ -1.63
VPS35-203ENST00000562420 CKMP06732 381 aa4.9□□□□□ -1.63
VPS35-203ENST00000562420 IGFALSP35858 605 aa4.9□□□□□ -1.63
VPS35-203ENST00000562420 NCKAP1LP55160 1127 aa4.9□□□□□ -1.63
VPS35-203ENST00000562420 NKX3-2P78367 333 aa4.9□□□□□ -1.63
VPS35-203ENST00000562420 ST5P78524 1137 aa4.9□□□□□ -1.63
VPS35-203ENST00000562420 CR1LQ2VPA4 569 aa4.9□□□□□ -1.63
VPS35-203ENST00000562420 PLEKHG4Q58EX7 1191 aa4.9□□□□□ -1.63
VPS35-203ENST00000562420 LCE5AQ5TCM9 118 aa4.9□□□□□ -1.63
VPS35-203ENST00000562420 TCERG1LQ5VWI1 586 aa4.9□□□□□ -1.63
VPS35-203ENST00000562420 HHIPL2Q6UWX4 724 aa4.9□□□□□ -1.63
VPS35-203ENST00000562420 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.9□□□□□ -1.63
VPS35-203ENST00000562420 SAPCD2Q86UD0 394 aa4.9□□□□□ -1.63
VPS35-203ENST00000562420 ARRDC4Q8NCT1 418 aa4.9□□□□□ -1.63
VPS35-203ENST00000562420 FNIP1Q8TF40 1166 aa4.9□□□□□ -1.63
VPS35-203ENST00000562420 DDX11Q96FC9 970 aa4.9□□□□□ -1.63
VPS35-203ENST00000562420 ORAI3Q9BRQ5 295 aa4.9□□□□□ -1.63
VPS35-203ENST00000562420 YIPF4Q9BSR8 244 aa4.9□□□□□ -1.63
VPS35-203ENST00000562420 MAGEC2Q9UBF1 373 aaPredicted RBP4.9□□□□□ -1.63
VPS35-203ENST00000562420 TMA7Q9Y2S6 64 aaKnown RBP4.9□□□□□ -1.63
VPS35-203ENST00000562420 MRPL42Q9Y6G3 142 aaKnown RBP4.9□□□□□ -1.63
VPS35-203ENST00000562420 PMF1-BGLAPU3KQ54 211 aa4.9□□□□□ -1.63
VPS35-203ENST00000562420 TLDC2A0PJX2 215 aa4.89□□□□□ -1.63
VPS35-203ENST00000562420 CCDC66A2RUB6 948 aa4.89□□□□□ -1.63
VPS35-203ENST00000562420 NKRFO15226 690 aaKnown RBP eCLIP4.89□□□□□ -1.63
VPS35-203ENST00000562420 CLASP2O75122 1294 aaKnown RBP4.89□□□□□ -1.63
VPS35-203ENST00000562420 RASGRP1O95267 797 aa4.89□□□□□ -1.63
VPS35-203ENST00000562420 ASMTLO95671 621 aa4.89□□□□□ -1.63
VPS35-203ENST00000562420 PLA2G1BP04054 148 aaKnown RBP4.89□□□□□ -1.63
VPS35-203ENST00000562420 ZSCAN22P10073 491 aaPredicted RBP4.89□□□□□ -1.63
VPS35-203ENST00000562420 MC3RP41968 323 aa4.89□□□□□ -1.63
VPS35-203ENST00000562420 AFF3P51826 1226 aaKnown RBP4.89□□□□□ -1.63
VPS35-203ENST00000562420 PABPC4Q13310 644 aaKnown RBP eCLIP4.89□□□□□ -1.63
VPS35-203ENST00000562420 TUSC3Q13454 348 aa4.89□□□□□ -1.63
VPS35-203ENST00000562420 CRY1Q16526 586 aa4.89□□□□□ -1.63
VPS35-203ENST00000562420 VWA3BQ502W6 1294 aa4.89□□□□□ -1.63
VPS35-203ENST00000562420 TEPPQ6URK8 271 aa4.89□□□□□ -1.63
VPS35-203ENST00000562420 TTLL6Q8N841 843 aa4.89□□□□□ -1.63
VPS35-203ENST00000562420 LINC01356Q8N9X3 169 aa4.89□□□□□ -1.63
VPS35-203ENST00000562420 KYQ8NBH2 561 aa4.89□□□□□ -1.63
VPS35-203ENST00000562420 SH3RF2Q8TEC5 729 aa4.89□□□□□ -1.63
VPS35-203ENST00000562420 CLUHP3Q96NS8 147 aa4.89□□□□□ -1.63
VPS35-203ENST00000562420 TMEM209Q96SK2 561 aa4.89□□□□□ -1.63
VPS35-203ENST00000562420 KCNJ15Q99712 375 aa4.89□□□□□ -1.63
VPS35-203ENST00000562420 BCAS3Q9H6U6 928 aa4.89□□□□□ -1.63
VPS35-203ENST00000562420 FANCLQ9NW38 375 aa4.89□□□□□ -1.63
VPS35-203ENST00000562420 CBLCQ9ULV8 474 aa4.89□□□□□ -1.63
VPS35-203ENST00000562420 TCRBV5S4A2TA0A5A2 114 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 B8ZZF3 427 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 PRRG2O14669 202 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 SLC27A2O14975 620 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 DNAJC8O75937 253 aaPredicted RBP4.88□□□□□ -1.63
VPS35-203ENST00000562420 RAPGEF3O95398 923 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 LRG1P02750 347 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 AMY2AP04746 511 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 PYGMP11217 842 aa4.88□□□□□ -1.63
VPS35-203ENST00000562420 PDE6AP16499 860 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms