RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 DEFB128Q7Z7B8 93 aa17.93■□□□□ 0.46
VPS39-203ENST00000561797 RPUSD2Q8IZ73 545 aaKnown RBP17.93■□□□□ 0.46
VPS39-203ENST00000561797 GPR20Q99678 358 aa17.93■□□□□ 0.46
VPS39-203ENST00000561797 C16orf70Q9BSU1 422 aa17.93■□□□□ 0.46
VPS39-203ENST00000561797 SLC26A6Q9BXS9 759 aa17.93■□□□□ 0.46
VPS39-203ENST00000561797 ANO3Q9BYT9 981 aa17.93■□□□□ 0.46
VPS39-203ENST00000561797 PDRG1Q9NUG6 133 aa17.93■□□□□ 0.46
VPS39-203ENST00000561797 MTMR10Q9NXD2 777 aa17.93■□□□□ 0.46
VPS39-203ENST00000561797 GTF2IRD1Q9UHL9 959 aa17.93■□□□□ 0.46
VPS39-203ENST00000561797 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.92■□□□□ 0.46
VPS39-203ENST00000561797 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.92■□□□□ 0.46
VPS39-203ENST00000561797 FOSP01100 380 aaPredicted RBP17.92■□□□□ 0.46
VPS39-203ENST00000561797 ZNF200P98182 395 aaPredicted RBP17.92■□□□□ 0.46
VPS39-203ENST00000561797 MTMR1Q13613 665 aa17.92■□□□□ 0.46
VPS39-203ENST00000561797 NTRK3Q16288 839 aa17.92■□□□□ 0.46
VPS39-203ENST00000561797 UTP14CQ5TAP6 766 aaKnown RBP17.92■□□□□ 0.46
VPS39-203ENST00000561797 ZNF697Q5TEC3 545 aa17.92■□□□□ 0.46
VPS39-203ENST00000561797 JAKMIP3Q5VZ66 844 aa17.92■□□□□ 0.46
VPS39-203ENST00000561797 OTOP2Q7RTS6 562 aa17.92■□□□□ 0.46
VPS39-203ENST00000561797 CTAGE1Q96RT6 745 aa17.92■□□□□ 0.46
VPS39-203ENST00000561797 SENP7Q9BQF6 1050 aa17.92■□□□□ 0.46
VPS39-203ENST00000561797 GLT8D2Q9H1C3 349 aa17.92■□□□□ 0.46
VPS39-203ENST00000561797 JADE2Q9NQC1 790 aa17.92■□□□□ 0.46
VPS39-203ENST00000561797 WDR81Q562E7 1941 aa17.92■□□□□ 0.46
VPS39-203ENST00000561797 H3BRB1 525 aa17.91■□□□□ 0.46
VPS39-203ENST00000561797 KCNA2P16389 499 aa17.91■□□□□ 0.46
VPS39-203ENST00000561797 STK3Q13188 491 aa17.91■□□□□ 0.46
VPS39-203ENST00000561797 FAM109BQ6ICB4 259 aaPredicted RBP17.91■□□□□ 0.46
VPS39-203ENST00000561797 CCDC155Q8N6L0 562 aa17.91■□□□□ 0.46
VPS39-203ENST00000561797 GIMAP8Q8ND71 665 aaPredicted RBP17.91■□□□□ 0.46
VPS39-203ENST00000561797 HERVK_113Q902F9 699 aa17.91■□□□□ 0.46
VPS39-203ENST00000561797 CDHR1Q96JP9 859 aa17.91■□□□□ 0.46
VPS39-203ENST00000561797 MXRA8Q9BRK3 442 aa17.91■□□□□ 0.46
VPS39-203ENST00000561797 TUT1Q9H6E5 874 aaKnown RBP17.91■□□□□ 0.46
VPS39-203ENST00000561797 CXXC1Q9P0U4 656 aaPredicted RBP17.91■□□□□ 0.46
VPS39-203ENST00000561797 SZT2Q5T011 3432 aa17.91■□□□□ 0.46
VPS39-203ENST00000561797 GRXCR1A8MXD5 290 aa17.9■□□□□ 0.46
VPS39-203ENST00000561797 PITPNM1O00562 1244 aa17.9■□□□□ 0.46
VPS39-203ENST00000561797 ADAMTS3O15072 1205 aa17.9■□□□□ 0.46
VPS39-203ENST00000561797 IQCF3P0C7M6 154 aa17.9■□□□□ 0.46
VPS39-203ENST00000561797 IFNAR1P17181 557 aa17.9■□□□□ 0.46
VPS39-203ENST00000561797 CLK2P49760 499 aaKnown RBP17.9■□□□□ 0.46
VPS39-203ENST00000561797 AP3B2Q13367 1082 aa17.9■□□□□ 0.46
VPS39-203ENST00000561797 HIC1Q14526 733 aa17.9■□□□□ 0.46
VPS39-203ENST00000561797 RASIP1Q5U651 963 aa17.9■□□□□ 0.46
VPS39-203ENST00000561797 TRIM50Q86XT4 487 aa17.9■□□□□ 0.46
VPS39-203ENST00000561797 CYP2W1Q8TAV3 490 aa17.9■□□□□ 0.46
VPS39-203ENST00000561797 CCDC12Q8WUD4 166 aaPredicted RBP17.9■□□□□ 0.46
VPS39-203ENST00000561797 DHX38Q92620 1227 aaKnown RBP17.9■□□□□ 0.46
VPS39-203ENST00000561797 VWCEQ96DN2 955 aa17.9■□□□□ 0.46
VPS39-203ENST00000561797 ZNF274Q96GC6 653 aaPredicted RBP17.9■□□□□ 0.46
VPS39-203ENST00000561797 RNF26Q9BY78 433 aaPredicted RBP17.9■□□□□ 0.46
VPS39-203ENST00000561797 MTIF3Q9H2K0 278 aaKnown RBP17.9■□□□□ 0.46
VPS39-203ENST00000561797 C6orf50Q9HD87 102 aa17.9■□□□□ 0.46
VPS39-203ENST00000561797 PTPRSQ13332 1948 aa17.9■□□□□ 0.46
VPS39-203ENST00000561797 MYH9P35579 1960 aaKnown RBP17.9■□□□□ 0.46
VPS39-203ENST00000561797 ZBBXA8MT70 800 aa17.89■□□□□ 0.45
VPS39-203ENST00000561797 ZNF76P36508 570 aa17.89■□□□□ 0.45
VPS39-203ENST00000561797 PTK7Q13308 1070 aa17.89■□□□□ 0.45
VPS39-203ENST00000561797 TEX2Q8IWB9 1127 aa17.89■□□□□ 0.45
VPS39-203ENST00000561797 CAGE1Q8TC20 777 aa17.89■□□□□ 0.45
VPS39-203ENST00000561797 FTOQ9C0B1 505 aaKnown RBP eCLIP17.89■□□□□ 0.45
VPS39-203ENST00000561797 ZMYND12Q9H0C1 365 aa17.89■□□□□ 0.45
VPS39-203ENST00000561797 ESYT2A0FGR8 921 aa17.88■□□□□ 0.45
VPS39-203ENST00000561797 C17orf102A2RUQ5 167 aa17.88■□□□□ 0.45
VPS39-203ENST00000561797 CPLX1O14810 134 aa17.88■□□□□ 0.45
VPS39-203ENST00000561797 MAFGO15525 162 aa17.88■□□□□ 0.45
VPS39-203ENST00000561797 SMIM10L2AP0DMW4 78 aa17.88■□□□□ 0.45
VPS39-203ENST00000561797 SMIM10L2BP0DMW5 78 aa17.88■□□□□ 0.45
VPS39-203ENST00000561797 ARP10275 920 aa17.88■□□□□ 0.45
VPS39-203ENST00000561797 RFC2P35250 354 aa17.88■□□□□ 0.45
VPS39-203ENST00000561797 TCF7P36402 384 aaPredicted RBP17.88■□□□□ 0.45
VPS39-203ENST00000561797 SREBF1P36956 1147 aa17.88■□□□□ 0.45
VPS39-203ENST00000561797 SSRP1Q08945 709 aaKnown RBP17.88■□□□□ 0.45
VPS39-203ENST00000561797 TRIM22Q8IYM9 498 aa17.88■□□□□ 0.45
VPS39-203ENST00000561797 AFAP1L1Q8TED9 768 aa17.88■□□□□ 0.45
VPS39-203ENST00000561797 SEMA6BQ9H3T3 888 aa17.88■□□□□ 0.45
VPS39-203ENST00000561797 KCNH7Q9NS40 1196 aa17.88■□□□□ 0.45
VPS39-203ENST00000561797 VPS54Q9P1Q0 977 aa17.88■□□□□ 0.45
VPS39-203ENST00000561797 ZNF215Q9UL58 517 aaPredicted RBP17.88■□□□□ 0.45
VPS39-203ENST00000561797 LAMA3Q16787 3333 aa17.88■□□□□ 0.45
VPS39-203ENST00000561797 LOXHD1Q8IVV2 1947 aa17.88■□□□□ 0.45
VPS39-203ENST00000561797 GSTTP1A0A1W2PQM5 241 aa17.87■□□□□ 0.45
VPS39-203ENST00000561797 PFKMP08237 780 aa17.87■□□□□ 0.45
VPS39-203ENST00000561797 CKBP12277 381 aa17.87■□□□□ 0.45
VPS39-203ENST00000561797 SELPP16109 830 aa17.87■□□□□ 0.45
VPS39-203ENST00000561797 DNAJB2P25686 324 aa17.87■□□□□ 0.45
VPS39-203ENST00000561797 GNA11P29992 359 aa17.87■□□□□ 0.45
VPS39-203ENST00000561797 PBX2P40425 430 aa17.87■□□□□ 0.45
VPS39-203ENST00000561797 ARHGAP4P98171 946 aa17.87■□□□□ 0.45
VPS39-203ENST00000561797 CEP55Q53EZ4 464 aa17.87■□□□□ 0.45
VPS39-203ENST00000561797 LRRC8DQ7L1W4 858 aa17.87■□□□□ 0.45
VPS39-203ENST00000561797 REXO1Q8N1G1 1221 aaKnown RBP17.87■□□□□ 0.45
VPS39-203ENST00000561797 SEPT1Q8WYJ6 367 aa17.87■□□□□ 0.45
VPS39-203ENST00000561797 ATP6V0A1Q93050 837 aa17.87■□□□□ 0.45
VPS39-203ENST00000561797 WNT8BQ93098 351 aa17.87■□□□□ 0.45
VPS39-203ENST00000561797 TTYH1Q9H313 450 aaPredicted RBP17.87■□□□□ 0.45
VPS39-203ENST00000561797 RNPEPQ9H4A4 650 aa17.87■□□□□ 0.45
VPS39-203ENST00000561797 ACTN1P12814 892 aa17.86■□□□□ 0.45
VPS39-203ENST00000561797 ANAPC15P60006 121 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms