RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 LRRC2Q9BYS8 371 aa21.96■■□□□ 1.11
VPS35-202ENST00000561713 C11orf16Q9NQ32 467 aa21.96■■□□□ 1.11
VPS35-202ENST00000561713 BRWD1Q9NSI6 2320 aa21.96■■□□□ 1.11
VPS35-202ENST00000561713 PNMA6FA0A0J9YX94 578 aa21.95■■□□□ 1.1
VPS35-202ENST00000561713 SLC27A2O14975 620 aa21.95■■□□□ 1.1
VPS35-202ENST00000561713 GGPS1O95749 300 aa21.95■■□□□ 1.1
VPS35-202ENST00000561713 CCND2P30279 289 aa21.95■■□□□ 1.1
VPS35-202ENST00000561713 SP2Q02086 613 aa21.95■■□□□ 1.1
VPS35-202ENST00000561713 CASC1Q6TDU7 716 aa21.95■■□□□ 1.1
VPS35-202ENST00000561713 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.95■■□□□ 1.1
VPS35-202ENST00000561713 CMTR1Q8N1G2 835 aaKnown RBP21.95■■□□□ 1.1
VPS35-202ENST00000561713 HCN4Q9Y3Q4 1203 aa21.95■■□□□ 1.1
VPS35-202ENST00000561713 FAM86C2PA6NEL3 165 aa21.94■■□□□ 1.1
VPS35-202ENST00000561713 SH2B2O14492 632 aaPredicted RBP21.94■■□□□ 1.1
VPS35-202ENST00000561713 EFCAB14O75071 495 aa21.94■■□□□ 1.1
VPS35-202ENST00000561713 DDAH1O94760 285 aa21.94■■□□□ 1.1
VPS35-202ENST00000561713 HOXD11P31277 338 aaPredicted RBP21.94■■□□□ 1.1
VPS35-202ENST00000561713 CTCFLQ8NI51 663 aaPredicted RBP21.94■■□□□ 1.1
VPS35-202ENST00000561713 BCAS3Q9H6U6 928 aa21.94■■□□□ 1.1
VPS35-202ENST00000561713 UBE2ZQ9H832 354 aaPredicted RBP21.94■■□□□ 1.1
VPS35-202ENST00000561713 ANO2Q9NQ90 1003 aa21.94■■□□□ 1.1
VPS35-202ENST00000561713 MICAL3Q7RTP6 2002 aa21.94■■□□□ 1.1
VPS35-202ENST00000561713 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.93■■□□□ 1.1
VPS35-202ENST00000561713 GPR37L1O60883 481 aa21.93■■□□□ 1.1
VPS35-202ENST00000561713 LGR5O75473 907 aa21.93■■□□□ 1.1
VPS35-202ENST00000561713 HOXD8P13378 290 aaPredicted RBP21.93■■□□□ 1.1
VPS35-202ENST00000561713 HSDL1Q3SXM5 330 aa21.93■■□□□ 1.1
VPS35-202ENST00000561713 MYSM1Q5VVJ2 828 aa21.93■■□□□ 1.1
VPS35-202ENST00000561713 NFXL1Q6ZNB6 911 aa21.93■■□□□ 1.1
VPS35-202ENST00000561713 VSIG10LQ86VR7 867 aa21.93■■□□□ 1.1
VPS35-202ENST00000561713 SPATA33Q96N06 139 aa21.93■■□□□ 1.1
VPS35-202ENST00000561713 C17orf80Q9BSJ5 609 aa21.93■■□□□ 1.1
VPS35-202ENST00000561713 ARIH1Q9Y4X5 557 aaPredicted RBP21.93■■□□□ 1.1
VPS35-202ENST00000561713 SIP14410 1827 aa21.92■■□□□ 1.1
VPS35-202ENST00000561713 FRMPD4Q14CM0 1322 aa21.92■■□□□ 1.1
VPS35-202ENST00000561713 hCG_1642624A0A1W2PR95 340 aa21.92■■□□□ 1.1
VPS35-202ENST00000561713 PPFIA4O75335 1185 aa21.92■■□□□ 1.1
VPS35-202ENST00000561713 CELF3Q5SZQ8 465 aaKnown RBP21.92■■□□□ 1.1
VPS35-202ENST00000561713 CREB3L3Q68CJ9 461 aa21.92■■□□□ 1.1
VPS35-202ENST00000561713 SPZ1Q9BXG8 430 aa21.92■■□□□ 1.1
VPS35-202ENST00000561713 KAT6AQ92794 2004 aa21.92■■□□□ 1.1
VPS35-202ENST00000561713 PI4K2BG5E9Z4 385 aa21.91■■□□□ 1.1
VPS35-202ENST00000561713 KCNA5P22460 613 aa21.91■■□□□ 1.1
VPS35-202ENST00000561713 THPOP40225 353 aa21.91■■□□□ 1.1
VPS35-202ENST00000561713 MRPS9P82933 396 aaKnown RBP21.91■■□□□ 1.1
VPS35-202ENST00000561713 MKRN4PQ13434 485 aaPredicted RBP21.91■■□□□ 1.1
VPS35-202ENST00000561713 USP17L6PQ6QN14 398 aa21.91■■□□□ 1.1
VPS35-202ENST00000561713 DBF4BQ8NFT6 615 aa21.91■■□□□ 1.1
VPS35-202ENST00000561713 MAP3K20Q9NYL2 800 aaKnown RBP21.91■■□□□ 1.1
VPS35-202ENST00000561713 TELO2Q9Y4R8 837 aa21.91■■□□□ 1.1
VPS35-202ENST00000561713 INSL6Q9Y581 213 aa21.91■■□□□ 1.1
VPS35-202ENST00000561713 EMSYQ7Z589 1322 aa21.9■■□□□ 1.1
VPS35-202ENST00000561713 CCDC69A6NI79 296 aa21.9■■□□□ 1.1
VPS35-202ENST00000561713 RSPH10B2B2RC85 870 aa21.9■■□□□ 1.1
VPS35-202ENST00000561713 RSPH10BP0C881 870 aa21.9■■□□□ 1.1
VPS35-202ENST00000561713 MCM5P33992 734 aa21.9■■□□□ 1.1
VPS35-202ENST00000561713 SEMA3FQ13275 785 aa21.9■■□□□ 1.1
VPS35-202ENST00000561713 LEXMQ3ZCV2 418 aa21.9■■□□□ 1.1
VPS35-202ENST00000561713 SERINC5Q86VE9 423 aa21.9■■□□□ 1.1
VPS35-202ENST00000561713 MYOCDQ8IZQ8 938 aa21.9■■□□□ 1.1
VPS35-202ENST00000561713 SRBD1Q8N5C6 995 aaKnown RBP21.9■■□□□ 1.1
VPS35-202ENST00000561713 FBXO22Q8NEZ5 403 aa21.9■■□□□ 1.1
VPS35-202ENST00000561713 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.9■■□□□ 1.1
VPS35-202ENST00000561713 RRP36Q96EU6 259 aaKnown RBP21.9■■□□□ 1.1
VPS35-202ENST00000561713 C16orf70Q9BSU1 422 aa21.9■■□□□ 1.1
VPS35-202ENST00000561713 RTEL1Q9NZ71 1219 aa21.9■■□□□ 1.1
VPS35-202ENST00000561713 AMHP03971 560 aa21.89■■□□□ 1.09
VPS35-202ENST00000561713 KIF5BP33176 963 aa21.89■■□□□ 1.09
VPS35-202ENST00000561713 HTRA4P83105 476 aaPredicted RBP21.89■■□□□ 1.09
VPS35-202ENST00000561713 TRAF1Q13077 416 aa21.89■■□□□ 1.09
VPS35-202ENST00000561713 MICU3Q86XE3 530 aa21.89■■□□□ 1.09
VPS35-202ENST00000561713 FAM178BQ8IXR5 827 aa21.89■■□□□ 1.09
VPS35-202ENST00000561713 TCEANC2Q96MN5 208 aa21.89■■□□□ 1.09
VPS35-202ENST00000561713 SEC63Q9UGP8 760 aaKnown RBP21.89■■□□□ 1.09
VPS35-202ENST00000561713 SP4Q02446 784 aa21.88■■□□□ 1.09
VPS35-202ENST00000561713 KCNV1Q6PIU1 500 aa21.88■■□□□ 1.09
VPS35-202ENST00000561713 TRIM50Q86XT4 487 aa21.88■■□□□ 1.09
VPS35-202ENST00000561713 SAMD3Q8N6K7 520 aa21.88■■□□□ 1.09
VPS35-202ENST00000561713 SMARCC2Q8TAQ2 1214 aa21.88■■□□□ 1.09
VPS35-202ENST00000561713 TMEM87BQ96K49 555 aa21.88■■□□□ 1.09
VPS35-202ENST00000561713 OSBPL7Q9BZF2 842 aa21.88■■□□□ 1.09
VPS35-202ENST00000561713 MLXIPQ9HAP2 919 aa21.88■■□□□ 1.09
VPS35-202ENST00000561713 IL9P15248 144 aa21.87■■□□□ 1.09
VPS35-202ENST00000561713 NECTIN1Q15223 517 aa21.87■■□□□ 1.09
VPS35-202ENST00000561713 UBE2SQ16763 222 aa21.87■■□□□ 1.09
VPS35-202ENST00000561713 PLEKHG4Q58EX7 1191 aa21.87■■□□□ 1.09
VPS35-202ENST00000561713 GJD3Q8N144 294 aa21.87■■□□□ 1.09
VPS35-202ENST00000561713 CCDC82Q8N4S0 544 aa21.87■■□□□ 1.09
VPS35-202ENST00000561713 SP7Q8TDD2 431 aaPredicted RBP21.87■■□□□ 1.09
VPS35-202ENST00000561713 ATP6V0A1Q93050 837 aa21.87■■□□□ 1.09
VPS35-202ENST00000561713 C17orf102A2RUQ5 167 aa21.86■■□□□ 1.09
VPS35-202ENST00000561713 LGALS2P05162 132 aa21.86■■□□□ 1.09
VPS35-202ENST00000561713 GNPTABQ3T906 1256 aa21.86■■□□□ 1.09
VPS35-202ENST00000561713 EPC2Q52LR7 807 aa21.86■■□□□ 1.09
VPS35-202ENST00000561713 BMP2KLQ5H9B9 411 aa21.86■■□□□ 1.09
VPS35-202ENST00000561713 PTCRAQ6ISU1 281 aaPredicted RBP21.86■■□□□ 1.09
VPS35-202ENST00000561713 CYFIP1Q7L576 1253 aa21.86■■□□□ 1.09
VPS35-202ENST00000561713 MRPL38Q96DV4 380 aaKnown RBP21.86■■□□□ 1.09
VPS35-202ENST00000561713 INPP4AQ96PE3 977 aaPredicted RBP21.86■■□□□ 1.09
VPS35-202ENST00000561713 MAP3K14Q99558 947 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms