RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 C17orf102A2RUQ5 167 aa19.04■□□□□ 0.64
CLN3-208ENST00000561505 LGALS2P05162 132 aa19.04■□□□□ 0.64
CLN3-208ENST00000561505 LEXMQ3ZCV2 418 aa19.04■□□□□ 0.64
CLN3-208ENST00000561505 FAM26DQ5JW98 314 aa19.04■□□□□ 0.64
CLN3-208ENST00000561505 TOP1MTQ969P6 601 aa19.04■□□□□ 0.64
CLN3-208ENST00000561505 SAMD11Q96NU1 681 aa19.04■□□□□ 0.64
CLN3-208ENST00000561505 MAP3K14Q99558 947 aa19.04■□□□□ 0.64
CLN3-208ENST00000561505 UBE2ZQ9H832 354 aaPredicted RBP19.04■□□□□ 0.64
CLN3-208ENST00000561505 MLXIPQ9HAP2 919 aa19.04■□□□□ 0.64
CLN3-208ENST00000561505 SENP2Q9HC62 589 aa19.04■□□□□ 0.64
CLN3-208ENST00000561505 CD320Q9NPF0 282 aa19.04■□□□□ 0.64
CLN3-208ENST00000561505 C11orf16Q9NQ32 467 aa19.04■□□□□ 0.64
CLN3-208ENST00000561505 MICAL3Q7RTP6 2002 aa19.03■□□□□ 0.64
CLN3-208ENST00000561505 PI4K2BG5E9Z4 385 aa19.03■□□□□ 0.64
CLN3-208ENST00000561505 TREHO43280 583 aa19.03■□□□□ 0.64
CLN3-208ENST00000561505 AMHP03971 560 aa19.03■□□□□ 0.64
CLN3-208ENST00000561505 SMIM10L2AP0DMW4 78 aa19.03■□□□□ 0.64
CLN3-208ENST00000561505 SMIM10L2BP0DMW5 78 aa19.03■□□□□ 0.64
CLN3-208ENST00000561505 GSPT1P15170 499 aaKnown RBP19.03■□□□□ 0.64
CLN3-208ENST00000561505 THPOP40225 353 aa19.03■□□□□ 0.64
CLN3-208ENST00000561505 NEDD9Q14511 834 aa19.03■□□□□ 0.64
CLN3-208ENST00000561505 METTL7BQ6UX53 244 aa19.03■□□□□ 0.64
CLN3-208ENST00000561505 RPAINQ86UA6 219 aa19.03■□□□□ 0.64
CLN3-208ENST00000561505 ATP6V0A1Q93050 837 aa19.03■□□□□ 0.64
CLN3-208ENST00000561505 SENP7Q9BQF6 1050 aa19.03■□□□□ 0.64
CLN3-208ENST00000561505 C17orf80Q9BSJ5 609 aa19.03■□□□□ 0.64
CLN3-208ENST00000561505 OSBPL7Q9BZF2 842 aa19.03■□□□□ 0.64
CLN3-208ENST00000561505 U3KPZ7 1027 aaPredicted RBP19.03■□□□□ 0.64
CLN3-208ENST00000561505 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.02■□□□□ 0.64
CLN3-208ENST00000561505 RBAK-RBAKDNI3L0D1 243 aa19.02■□□□□ 0.64
CLN3-208ENST00000561505 PDE4AP27815 886 aa19.02■□□□□ 0.64
CLN3-208ENST00000561505 SMARCA1P28370 1054 aa19.02■□□□□ 0.64
CLN3-208ENST00000561505 XRRA1Q6P2D8 792 aa19.02■□□□□ 0.64
CLN3-208ENST00000561505 FAM178BQ8IXR5 827 aa19.02■□□□□ 0.64
CLN3-208ENST00000561505 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.02■□□□□ 0.64
CLN3-208ENST00000561505 IGDCC4Q8TDY8 1250 aa19.02■□□□□ 0.64
CLN3-208ENST00000561505 MRPL38Q96DV4 380 aaKnown RBP19.02■□□□□ 0.64
CLN3-208ENST00000561505 GPR20Q99678 358 aa19.02■□□□□ 0.64
CLN3-208ENST00000561505 PIK3CDO00329 1044 aa19.01■□□□□ 0.63
CLN3-208ENST00000561505 FIBPO43427 364 aa19.01■□□□□ 0.63
CLN3-208ENST00000561505 PTH1RQ03431 593 aa19.01■□□□□ 0.63
CLN3-208ENST00000561505 TRDNQ13061 729 aa19.01■□□□□ 0.63
CLN3-208ENST00000561505 GNPTABQ3T906 1256 aa19.01■□□□□ 0.63
CLN3-208ENST00000561505 TTC22Q5TAA0 569 aa19.01■□□□□ 0.63
CLN3-208ENST00000561505 HOMER1Q86YM7 354 aa19.01■□□□□ 0.63
CLN3-208ENST00000561505 FBXO22Q8NEZ5 403 aa19.01■□□□□ 0.63
CLN3-208ENST00000561505 EXOC6Q8TAG9 804 aa19.01■□□□□ 0.63
CLN3-208ENST00000561505 NEK9Q8TD19 979 aa19.01■□□□□ 0.63
CLN3-208ENST00000561505 MTUS1Q9ULD2 1270 aa19.01■□□□□ 0.63
CLN3-208ENST00000561505 TAF6LQ9Y6J9 622 aa19.01■□□□□ 0.63
CLN3-208ENST00000561505 H3BNC9 293 aa19■□□□□ 0.63
CLN3-208ENST00000561505 MEIS2O14770 477 aa19■□□□□ 0.63
CLN3-208ENST00000561505 IFIT3O14879 490 aaKnown RBP19■□□□□ 0.63
CLN3-208ENST00000561505 HOXD11P31277 338 aaPredicted RBP19■□□□□ 0.63
CLN3-208ENST00000561505 ANTXR2P58335 489 aa19■□□□□ 0.63
CLN3-208ENST00000561505 EPC2Q52LR7 807 aa19■□□□□ 0.63
CLN3-208ENST00000561505 TMEM31Q5JXX7 168 aa19■□□□□ 0.63
CLN3-208ENST00000561505 PCNX4Q63HM2 1172 aa19■□□□□ 0.63
CLN3-208ENST00000561505 FCHSD1Q86WN1 690 aa19■□□□□ 0.63
CLN3-208ENST00000561505 SEPT8Q92599 483 aa19■□□□□ 0.63
CLN3-208ENST00000561505 APBB2Q92870 758 aa19■□□□□ 0.63
CLN3-208ENST00000561505 ZFP91Q96JP5 570 aaPredicted RBP19■□□□□ 0.63
CLN3-208ENST00000561505 MTA3Q9BTC8 594 aa19■□□□□ 0.63
CLN3-208ENST00000561505 SPZ1Q9BXG8 430 aa19■□□□□ 0.63
CLN3-208ENST00000561505 BAZ2BQ9UIF8 2168 aaKnown RBP18.99■□□□□ 0.63
CLN3-208ENST00000561505 E7EWF7 191 aa18.99■□□□□ 0.63
CLN3-208ENST00000561505 SORBS3O60504 671 aa18.99■□□□□ 0.63
CLN3-208ENST00000561505 LINC00271P0C7V0 271 aa18.99■□□□□ 0.63
CLN3-208ENST00000561505 GNAT1P11488 350 aa18.99■□□□□ 0.63
CLN3-208ENST00000561505 CHMLP26374 656 aa18.99■□□□□ 0.63
CLN3-208ENST00000561505 FAM117BQ6P1L5 589 aa18.99■□□□□ 0.63
CLN3-208ENST00000561505 CYFIP1Q7L576 1253 aa18.99■□□□□ 0.63
CLN3-208ENST00000561505 MYOCDQ8IZQ8 938 aa18.99■□□□□ 0.63
CLN3-208ENST00000561505 FAM122AQ96E09 287 aa18.99■□□□□ 0.63
CLN3-208ENST00000561505 EHMT1Q9H9B1 1298 aa18.99■□□□□ 0.63
CLN3-208ENST00000561505 SETD4Q9NVD3 440 aa18.99■□□□□ 0.63
CLN3-208ENST00000561505 GRXCR2A6NFK2 248 aa18.98■□□□□ 0.63
CLN3-208ENST00000561505 C5orf67F2Z3F1 127 aa18.98■□□□□ 0.63
CLN3-208ENST00000561505 WTAPQ15007 396 aa18.98■□□□□ 0.63
CLN3-208ENST00000561505 PUS10Q3MIT2 529 aaKnown RBP18.98■□□□□ 0.63
CLN3-208ENST00000561505 MB21D2Q8IYB1 491 aaPredicted RBP18.98■□□□□ 0.63
CLN3-208ENST00000561505 NCOA7Q8NI08 942 aa18.98■□□□□ 0.63
CLN3-208ENST00000561505 MAP4K1Q92918 833 aa18.98■□□□□ 0.63
CLN3-208ENST00000561505 TELO2Q9Y4R8 837 aa18.98■□□□□ 0.63
CLN3-208ENST00000561505 NRCAMQ92823 1304 aa18.98■□□□□ 0.63
CLN3-208ENST00000561505 ERICH2A1L162 156 aa18.97■□□□□ 0.63
CLN3-208ENST00000561505 NOP56O00567 594 aaKnown RBP18.97■□□□□ 0.63
CLN3-208ENST00000561505 SGSM2O43147 1006 aa18.97■□□□□ 0.63
CLN3-208ENST00000561505 TMEM192Q8IY95 271 aa18.97■□□□□ 0.63
CLN3-208ENST00000561505 RUFY2Q8WXA3 655 aa18.97■□□□□ 0.63
CLN3-208ENST00000561505 RC3H2Q9HBD1 1191 aaKnown RBP18.97■□□□□ 0.63
CLN3-208ENST00000561505 SART3Q15020 963 aaKnown RBP18.96■□□□□ 0.63
CLN3-208ENST00000561505 PTPROQ16827 1216 aa18.96■□□□□ 0.63
CLN3-208ENST00000561505 TIGD5Q53EQ6 642 aa18.96■□□□□ 0.63
CLN3-208ENST00000561505 CATIPQ7Z7H3 387 aa18.96■□□□□ 0.63
CLN3-208ENST00000561505 GJD3Q8N144 294 aa18.96■□□□□ 0.63
CLN3-208ENST00000561505 GIMAP8Q8ND71 665 aaPredicted RBP18.96■□□□□ 0.63
CLN3-208ENST00000561505 LMBR1Q8WVP7 490 aa18.96■□□□□ 0.63
CLN3-208ENST00000561505 PABPC5Q96DU9 382 aaKnown RBP18.96■□□□□ 0.63
CLN3-208ENST00000561505 RTEL1Q9NZ71 1219 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms