RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 TJAP1Q5JTD0 557 aa18.68■□□□□ 0.58
SNX1-213ENST00000561026 CYFIP1Q7L576 1253 aa18.68■□□□□ 0.58
SNX1-213ENST00000561026 SKAP1Q86WV1 359 aa18.68■□□□□ 0.58
SNX1-213ENST00000561026 FANCBQ8NB91 859 aa18.68■□□□□ 0.58
SNX1-213ENST00000561026 SENP7Q9BQF6 1050 aa18.68■□□□□ 0.58
SNX1-213ENST00000561026 LRRC2Q9BYS8 371 aa18.68■□□□□ 0.58
SNX1-213ENST00000561026 PSTPIP2Q9H939 334 aa18.68■□□□□ 0.58
SNX1-213ENST00000561026 TRANK1O15050 2925 aa18.67■□□□□ 0.58
SNX1-213ENST00000561026 ABHD14A-ACY1A0A1B0GW23 586 aa18.67■□□□□ 0.58
SNX1-213ENST00000561026 C17orf102A2RUQ5 167 aa18.67■□□□□ 0.58
SNX1-213ENST00000561026 HOXC8P31273 242 aa18.67■□□□□ 0.58
SNX1-213ENST00000561026 TAP1Q03518 808 aa18.67■□□□□ 0.58
SNX1-213ENST00000561026 MBTPS1Q14703 1052 aa18.67■□□□□ 0.58
SNX1-213ENST00000561026 RNF20Q5VTR2 975 aa18.67■□□□□ 0.58
SNX1-213ENST00000561026 CENPQQ7L2Z9 268 aaPredicted RBP18.67■□□□□ 0.58
SNX1-213ENST00000561026 SGMS1Q86VZ5 419 aa18.67■□□□□ 0.58
SNX1-213ENST00000561026 ATXN2LQ8WWM7 1075 aaKnown RBP18.67■□□□□ 0.58
SNX1-213ENST00000561026 GPR20Q99678 358 aa18.67■□□□□ 0.58
SNX1-213ENST00000561026 RFXAPO00287 272 aa18.66■□□□□ 0.58
SNX1-213ENST00000561026 TLL1O43897 1013 aa18.66■□□□□ 0.58
SNX1-213ENST00000561026 ARHGEF15O94989 841 aa18.66■□□□□ 0.58
SNX1-213ENST00000561026 SMIM10L2AP0DMW4 78 aa18.66■□□□□ 0.58
SNX1-213ENST00000561026 SMIM10L2BP0DMW5 78 aa18.66■□□□□ 0.58
SNX1-213ENST00000561026 IKBKEQ14164 716 aa18.66■□□□□ 0.58
SNX1-213ENST00000561026 TCTN1Q2MV58 587 aa18.66■□□□□ 0.58
SNX1-213ENST00000561026 TMTC3Q6ZXV5 915 aa18.66■□□□□ 0.58
SNX1-213ENST00000561026 NLRX1Q86UT6 975 aa18.66■□□□□ 0.58
SNX1-213ENST00000561026 RAB11FIP4Q86YS3 637 aa18.66■□□□□ 0.58
SNX1-213ENST00000561026 CCDC82Q8N4S0 544 aa18.66■□□□□ 0.58
SNX1-213ENST00000561026 ATP6V0A1Q93050 837 aa18.66■□□□□ 0.58
SNX1-213ENST00000561026 RNPEPQ9H4A4 650 aa18.66■□□□□ 0.58
SNX1-213ENST00000561026 CERS4Q9HA82 394 aa18.66■□□□□ 0.58
SNX1-213ENST00000561026 hCG_1642624A0A1W2PR95 340 aa18.65■□□□□ 0.58
SNX1-213ENST00000561026 EFCAB14O75071 495 aa18.65■□□□□ 0.58
SNX1-213ENST00000561026 POU3F3P20264 500 aaPredicted RBP18.65■□□□□ 0.58
SNX1-213ENST00000561026 THPOP40225 353 aa18.65■□□□□ 0.58
SNX1-213ENST00000561026 DEFB103AP81534 67 aa18.65■□□□□ 0.58
SNX1-213ENST00000561026 TMCO2Q7Z6W1 182 aaPredicted RBP18.65■□□□□ 0.58
SNX1-213ENST00000561026 NEK1Q96PY6 1258 aa18.65■□□□□ 0.58
SNX1-213ENST00000561026 THEGQ9P2T0 379 aa18.65■□□□□ 0.58
SNX1-213ENST00000561026 TELO2Q9Y4R8 837 aa18.65■□□□□ 0.58
SNX1-213ENST00000561026 XIRP2A4UGR9 3374 aa18.65■□□□□ 0.58
SNX1-213ENST00000561026 REV3LO60673 3130 aa18.64■□□□□ 0.58
SNX1-213ENST00000561026 EMSYQ7Z589 1322 aa18.64■□□□□ 0.57
SNX1-213ENST00000561026 EPOPA6NHQ4 379 aa18.64■□□□□ 0.57
SNX1-213ENST00000561026 RSPH10B2B2RC85 870 aa18.64■□□□□ 0.57
SNX1-213ENST00000561026 TREHO43280 583 aa18.64■□□□□ 0.57
SNX1-213ENST00000561026 LGR5O75473 907 aa18.64■□□□□ 0.57
SNX1-213ENST00000561026 RSPH10BP0C881 870 aa18.64■□□□□ 0.57
SNX1-213ENST00000561026 SYNE3Q6ZMZ3 975 aa18.64■□□□□ 0.57
SNX1-213ENST00000561026 MICU3Q86XE3 530 aa18.64■□□□□ 0.57
SNX1-213ENST00000561026 GIMAP8Q8ND71 665 aaPredicted RBP18.64■□□□□ 0.57
SNX1-213ENST00000561026 ARNTL2Q8WYA1 636 aa18.64■□□□□ 0.57
SNX1-213ENST00000561026 GPRASP2Q96D09 838 aa18.64■□□□□ 0.57
SNX1-213ENST00000561026 ZBED2Q9BTP6 218 aa18.64■□□□□ 0.57
SNX1-213ENST00000561026 GJB5O95377 273 aa18.63■□□□□ 0.57
SNX1-213ENST00000561026 GNAT1P11488 350 aa18.63■□□□□ 0.57
SNX1-213ENST00000561026 ITGB5P18084 799 aa18.63■□□□□ 0.57
SNX1-213ENST00000561026 EXOSC10Q01780 885 aaKnown RBP18.63■□□□□ 0.57
SNX1-213ENST00000561026 TSGA10IPQ3SY00 556 aa18.63■□□□□ 0.57
SNX1-213ENST00000561026 APOA5Q6Q788 366 aa18.63■□□□□ 0.57
SNX1-213ENST00000561026 TRIM50Q86XT4 487 aa18.63■□□□□ 0.57
SNX1-213ENST00000561026 CDHR1Q96JP9 859 aa18.63■□□□□ 0.57
SNX1-213ENST00000561026 ASB2Q96Q27 587 aa18.63■□□□□ 0.57
SNX1-213ENST00000561026 SETD4Q9NVD3 440 aa18.63■□□□□ 0.57
SNX1-213ENST00000561026 ZNF215Q9UL58 517 aaPredicted RBP18.63■□□□□ 0.57
SNX1-213ENST00000561026 MTCH2Q9Y6C9 303 aa18.63■□□□□ 0.57
SNX1-213ENST00000561026 LCHNA4D1U4 455 aa18.62■□□□□ 0.57
SNX1-213ENST00000561026 RBAK-RBAKDNI3L0D1 243 aa18.62■□□□□ 0.57
SNX1-213ENST00000561026 GTPBP6O43824 516 aaPredicted RBP18.62■□□□□ 0.57
SNX1-213ENST00000561026 ATP9AO75110 1047 aa18.62■□□□□ 0.57
SNX1-213ENST00000561026 MRPS5P82675 430 aaKnown RBP18.62■□□□□ 0.57
SNX1-213ENST00000561026 SP4Q02446 784 aa18.62■□□□□ 0.57
SNX1-213ENST00000561026 UBE2SQ16763 222 aa18.62■□□□□ 0.57
SNX1-213ENST00000561026 UTP14CQ5TAP6 766 aaKnown RBP18.62■□□□□ 0.57
SNX1-213ENST00000561026 DHX32Q7L7V1 743 aaKnown RBP18.62■□□□□ 0.57
SNX1-213ENST00000561026 HEATR3Q7Z4Q2 680 aa18.62■□□□□ 0.57
SNX1-213ENST00000561026 MICALL1Q8N3F8 863 aa18.62■□□□□ 0.57
SNX1-213ENST00000561026 DBF4BQ8NFT6 615 aa18.62■□□□□ 0.57
SNX1-213ENST00000561026 RAD9AQ99638 391 aa18.62■□□□□ 0.57
SNX1-213ENST00000561026 PRRC2BQ5JSZ5 2229 aaKnown RBP18.62■□□□□ 0.57
SNX1-213ENST00000561026 SPDYE3A6NKU9 549 aa18.61■□□□□ 0.57
SNX1-213ENST00000561026 CAND2O75155 1236 aa18.61■□□□□ 0.57
SNX1-213ENST00000561026 KCNA2P16389 499 aa18.61■□□□□ 0.57
SNX1-213ENST00000561026 RASEFQ8IZ41 740 aa18.61■□□□□ 0.57
SNX1-213ENST00000561026 TCEANC2Q96MN5 208 aa18.61■□□□□ 0.57
SNX1-213ENST00000561026 TSPYL2Q9H2G4 693 aaPredicted RBP18.61■□□□□ 0.57
SNX1-213ENST00000561026 RBM28Q9NW13 759 aaKnown RBP18.61■□□□□ 0.57
SNX1-213ENST00000561026 BRPF3Q9ULD4 1205 aa18.61■□□□□ 0.57
SNX1-213ENST00000561026 PCDHA6Q9UN73 950 aa18.61■□□□□ 0.57
SNX1-213ENST00000561026 PCDHA8Q9Y5H6 950 aa18.61■□□□□ 0.57
SNX1-213ENST00000561026 UBIAD1Q9Y5Z9 338 aa18.61■□□□□ 0.57
SNX1-213ENST00000561026 ADAM17P78536 824 aa18.6■□□□□ 0.57
SNX1-213ENST00000561026 MKRN4PQ13434 485 aaPredicted RBP18.6■□□□□ 0.57
SNX1-213ENST00000561026 MTMR1Q13613 665 aa18.6■□□□□ 0.57
SNX1-213ENST00000561026 ADCK5Q3MIX3 580 aa18.6■□□□□ 0.57
SNX1-213ENST00000561026 PLEKHG4Q58EX7 1191 aa18.6■□□□□ 0.57
SNX1-213ENST00000561026 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.6■□□□□ 0.572e-8■■■■■ 31.5
SNX1-213ENST00000561026 SPRED2Q7Z698 418 aa18.6■□□□□ 0.57
SNX1-213ENST00000561026 NRCAMQ92823 1304 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms