RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 CHD4Q14839 1912 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 M0QZ92 97 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 ZBTB39O15060 712 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 ADAMTS3O15072 1205 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 PRR29P0C7W0 189 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 DDIT3P35638 169 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 UBXN1Q04323 297 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 AP3B2Q13367 1082 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 TATDN1Q6P1N9 297 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 SHC4Q6S5L8 630 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 THNSL1Q8IYQ7 743 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.04□□□□□ -1.446e-8■□□□□ 8.4
VPS13C-209ENST00000560637 NELFBQ8WX92 580 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 ZBTB9Q96C00 473 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 GMCL1Q96IK5 515 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 SGIP1Q9BQI5 828 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 MRIQ9BWK5 157 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 LRRC27Q9C0I9 530 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 NT5C3AQ9H0P0 336 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 GBP3Q9H0R5 595 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 KIAA1468Q9P260 1216 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 PPP2R3BQ9Y5P8 575 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 WNT7AO00755 349 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 MYBP10242 640 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 TNNI1P19237 187 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 BEX3Q00994 111 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 MFSD14CQ5VZR4 134 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 MIS18BP1Q6P0N0 1132 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 PLEKHH3Q7Z736 793 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 TICAM2Q86XR7 235 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 RHPN2Q8IUC4 686 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 PLCD3Q8N3E9 789 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 PAF1Q8N7H5 531 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 RGS22Q8NE09 1264 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 CCDC102AQ96A19 550 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 KIFC3Q9BVG8 833 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 GTPBP4Q9BZE4 634 aaKnown RBP6.04□□□□□ -1.44
VPS13C-209ENST00000560637 ZMYND12Q9H0C1 365 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 CBX8Q9HC52 389 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 JPH1Q9HDC5 661 aaPredicted RBP6.04□□□□□ -1.44
VPS13C-209ENST00000560637 NLRC4Q9NPP4 1024 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 NRBP2Q9NSY0 501 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 LARSQ9P2J5 1176 aaKnown RBP6.04□□□□□ -1.44
VPS13C-209ENST00000560637 STK36Q9NRP7 1315 aa6.04□□□□□ -1.44
VPS13C-209ENST00000560637 MACROD2A1Z1Q3 448 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 CXCL11O14625 94 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 PGK1P00558 417 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 RPN1P04843 607 aaKnown RBP6.03□□□□□ -1.44
VPS13C-209ENST00000560637 GCFC2P16383 781 aaKnown RBP6.03□□□□□ -1.44
VPS13C-209ENST00000560637 SFPQP23246 707 aaKnown RBP eCLIP6.03□□□□□ -1.44
VPS13C-209ENST00000560637 PTPREP23469 700 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 LONP1P36776 959 aaKnown RBP6.03□□□□□ -1.44
VPS13C-209ENST00000560637 ADCYAP1R1P41586 468 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 LIG4P49917 911 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 ATL3Q6DD88 541 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 GAS2L3Q86XJ1 694 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 TRAPPC12Q8WVT3 735 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 DDX12PQ92771 950 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 EIF2AK1Q9BQI3 630 aaKnown RBP6.03□□□□□ -1.44
VPS13C-209ENST00000560637 PYM1Q9BRP8 204 aaKnown RBP6.03□□□□□ -1.44
VPS13C-209ENST00000560637 MTA3Q9BTC8 594 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 SLC9A2Q9UBY0 812 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 SRPRBQ9Y5M8 271 aaKnown RBP6.03□□□□□ -1.44
VPS13C-209ENST00000560637 WDR64B1ANS9 1081 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 SLC16A4O15374 487 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 PPP1R11O60927 126 aaPredicted RBP6.03□□□□□ -1.44
VPS13C-209ENST00000560637 TOMM70O94826 608 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 ERLIN2O94905 339 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 PSAPP07602 524 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 ZNF286BP0CG31 522 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 TRAPPC10P48553 1259 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 GOLGA8FQ08AF8 430 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 GOLGA8DPQ0D2H9 430 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 ARHGEF6Q15052 776 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 FAM160B1Q5W0V3 765 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 CATSPERGQ6ZRH7 1159 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 CCDC186Q7Z3E2 898 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 POMGNT1Q8WZA1 660 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 KCNB2Q92953 911 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 DRC1Q96MC2 740 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 PDCD2LQ9BRP1 358 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 RIOX1Q9H6W3 641 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 GPRC5CQ9NQ84 441 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 FAM207AQ9NSI2 230 aaPredicted RBP6.03□□□□□ -1.44
VPS13C-209ENST00000560637 RNF19AQ9NV58 838 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 AGTPBP1Q9UPW5 1226 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 INPP5FQ9Y2H2 1132 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 SLX4Q8IY92 1834 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 TRIM49BA6NDI0 452 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 SPDYE5A6NIY4 337 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 FAM86B1E9PN63 330 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 FAM86B2P0C5J1 330 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 TMOD1P28289 359 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 TOB1P50616 345 aaPredicted RBP6.03□□□□□ -1.44
VPS13C-209ENST00000560637 STAT5BP51692 787 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 MYL5Q02045 173 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 PAK1Q13153 545 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 DMP1Q13316 513 aaPredicted RBP6.03□□□□□ -1.44
VPS13C-209ENST00000560637 PPIL2Q13356 520 aa6.03□□□□□ -1.44
VPS13C-209ENST00000560637 ARHGAP44Q17R89 818 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 117 ms