RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 ANP32AP39687 249 aaKnown RBP24.7■■□□□ 1.54
SNX1-210ENST00000560260 NEDD9Q14511 834 aa24.7■■□□□ 1.54
SNX1-210ENST00000560260 FSCN1Q16658 493 aaKnown RBP24.7■■□□□ 1.54
SNX1-210ENST00000560260 METTL7BQ6UX53 244 aa24.7■■□□□ 1.54
SNX1-210ENST00000560260 RBM19Q9Y4C8 960 aaKnown RBP24.7■■□□□ 1.54
SNX1-210ENST00000560260 NFASCO94856 1347 aa24.7■■□□□ 1.54
SNX1-210ENST00000560260 MKI67P46013 3256 aaKnown RBP24.7■■□□□ 1.54
SNX1-210ENST00000560260 HSDL1Q3SXM5 330 aa24.69■■□□□ 1.54
SNX1-210ENST00000560260 TTC38Q5R3I4 469 aa24.69■■□□□ 1.54
SNX1-210ENST00000560260 SLC5A5Q92911 643 aa24.69■■□□□ 1.54
SNX1-210ENST00000560260 ZNF577Q9BSK1 485 aa24.69■■□□□ 1.54
SNX1-210ENST00000560260 KCNMB3Q9NPA1 279 aa24.69■■□□□ 1.54
SNX1-210ENST00000560260 A6NJR5 290 aa24.68■■□□□ 1.54
SNX1-210ENST00000560260 IPO5O00410 1097 aaKnown RBP24.68■■□□□ 1.54
SNX1-210ENST00000560260 MMP3P08254 477 aa24.68■■□□□ 1.54
SNX1-210ENST00000560260 TRAPPC10P48553 1259 aa24.68■■□□□ 1.54
SNX1-210ENST00000560260 SP4Q02446 784 aa24.68■■□□□ 1.54
SNX1-210ENST00000560260 LAMC2Q13753 1193 aa24.68■■□□□ 1.54
SNX1-210ENST00000560260 RNF180Q86T96 592 aa24.68■■□□□ 1.54
SNX1-210ENST00000560260 SPATA33Q96N06 139 aa24.68■■□□□ 1.54
SNX1-210ENST00000560260 NAP1L4Q99733 375 aaKnown RBP24.68■■□□□ 1.54
SNX1-210ENST00000560260 TMEM60Q9H2L4 133 aa24.68■■□□□ 1.54
SNX1-210ENST00000560260 MLXIPQ9HAP2 919 aa24.68■■□□□ 1.54
SNX1-210ENST00000560260 NOL7Q9UMY1 257 aaKnown RBP24.68■■□□□ 1.54
SNX1-210ENST00000560260 DDX39AO00148 427 aaKnown RBP24.67■■□□□ 1.54
SNX1-210ENST00000560260 DNM1LO00429 736 aa24.67■■□□□ 1.54
SNX1-210ENST00000560260 CCNE2O96020 404 aa24.67■■□□□ 1.54
SNX1-210ENST00000560260 ZNF174Q15697 407 aa24.67■■□□□ 1.54
SNX1-210ENST00000560260 GNASQ5JWF2 1037 aa24.67■■□□□ 1.54
SNX1-210ENST00000560260 FAM173BQ6P4H8 233 aa24.67■■□□□ 1.54
SNX1-210ENST00000560260 UBE2Q1Q7Z7E8 422 aa24.67■■□□□ 1.54
SNX1-210ENST00000560260 ARRDC4Q8NCT1 418 aa24.67■■□□□ 1.54
SNX1-210ENST00000560260 PPTC7Q8NI37 304 aa24.67■■□□□ 1.54
SNX1-210ENST00000560260 HAS1Q92839 578 aa24.67■■□□□ 1.54
SNX1-210ENST00000560260 SPC25Q9HBM1 224 aa24.67■■□□□ 1.54
SNX1-210ENST00000560260 PCDHB6Q9Y5E3 794 aa24.67■■□□□ 1.54
SNX1-210ENST00000560260 HOXD8P13378 290 aaPredicted RBP24.66■■□□□ 1.54
SNX1-210ENST00000560260 MCM7P33993 719 aa24.66■■□□□ 1.54
SNX1-210ENST00000560260 KCNA10Q16322 511 aa24.66■■□□□ 1.54
SNX1-210ENST00000560260 FOXD4L5Q5VV16 416 aaPredicted RBP24.66■■□□□ 1.54
SNX1-210ENST00000560260 BRAPQ7Z569 592 aa24.66■■□□□ 1.54
SNX1-210ENST00000560260 ANKLE1Q8NAG6 615 aa24.66■■□□□ 1.54
SNX1-210ENST00000560260 FOXD4L4Q8WXT5 416 aaPredicted RBP24.66■■□□□ 1.54
SNX1-210ENST00000560260 GPR20Q99678 358 aa24.66■■□□□ 1.54
SNX1-210ENST00000560260 JPH1Q9HDC5 661 aaPredicted RBP24.66■■□□□ 1.54
SNX1-210ENST00000560260 MYH15Q9Y2K3 1946 aa24.66■■□□□ 1.54
SNX1-210ENST00000560260 NEMFO60524 1076 aa24.65■■□□□ 1.54
SNX1-210ENST00000560260 ASGR1P07306 291 aa24.65■■□□□ 1.54
SNX1-210ENST00000560260 DDIT3P35638 169 aa24.65■■□□□ 1.54
SNX1-210ENST00000560260 CPT1AP50416 773 aa24.65■■□□□ 1.54
SNX1-210ENST00000560260 GIMAP8Q8ND71 665 aaPredicted RBP24.65■■□□□ 1.54
SNX1-210ENST00000560260 SDF4Q9BRK5 362 aa24.65■■□□□ 1.54
SNX1-210ENST00000560260 SLC9A2Q9UBY0 812 aa24.65■■□□□ 1.54
SNX1-210ENST00000560260 PHF24Q9UPV7 400 aa24.65■■□□□ 1.54
SNX1-210ENST00000560260 ZDHHC9Q9Y397 364 aa24.65■■□□□ 1.54
SNX1-210ENST00000560260 KBTBD13C9JR72 458 aa24.64■■□□□ 1.54
SNX1-210ENST00000560260 PSMD10O75832 226 aa24.64■■□□□ 1.54
SNX1-210ENST00000560260 ZSCAN22P10073 491 aaPredicted RBP24.64■■□□□ 1.54
SNX1-210ENST00000560260 COL6A1P12109 1028 aa24.64■■□□□ 1.54
SNX1-210ENST00000560260 RILPL1Q5EBL4 403 aa24.64■■□□□ 1.54
SNX1-210ENST00000560260 TSEN34Q9BSV6 310 aaKnown RBP24.64■■□□□ 1.54
SNX1-210ENST00000560260 EIF4ENIF1Q9NRA8 985 aaKnown RBP24.64■■□□□ 1.54
SNX1-210ENST00000560260 GSTTP1A0A1W2PQM5 241 aa24.63■■□□□ 1.53
SNX1-210ENST00000560260 MYL3P08590 195 aa24.63■■□□□ 1.53
SNX1-210ENST00000560260 ACLYP53396 1101 aa24.63■■□□□ 1.53
SNX1-210ENST00000560260 LRCH2Q5VUJ6 765 aa24.63■■□□□ 1.53
SNX1-210ENST00000560260 B3GNT9Q6UX72 402 aa24.63■■□□□ 1.53
SNX1-210ENST00000560260 CXCL17Q6UXB2 119 aa24.63■■□□□ 1.53
SNX1-210ENST00000560260 C4orf32Q8N8J7 132 aa24.63■■□□□ 1.53
SNX1-210ENST00000560260 PAWRQ96IZ0 340 aaKnown RBP24.63■■□□□ 1.53
SNX1-210ENST00000560260 MTMR9Q96QG7 549 aa24.63■■□□□ 1.53
SNX1-210ENST00000560260 RIT2Q99578 217 aa24.63■■□□□ 1.53
SNX1-210ENST00000560260 UNC45AQ9H3U1 944 aa24.63■■□□□ 1.53
SNX1-210ENST00000560260 TBC1D22BQ9NU19 505 aa24.63■■□□□ 1.53
SNX1-210ENST00000560260 VAV3Q9UKW4 847 aa24.63■■□□□ 1.53
SNX1-210ENST00000560260 A0A1W2PQ45 241 aaPredicted RBP24.62■■□□□ 1.53
SNX1-210ENST00000560260 A0A1W2PQY0 241 aa24.62■■□□□ 1.53
SNX1-210ENST00000560260 MOXD2PA6NHM9 499 aa24.62■■□□□ 1.53
SNX1-210ENST00000560260 TBX3O15119 743 aa24.62■■□□□ 1.53
SNX1-210ENST00000560260 GAS7O60861 476 aa24.62■■□□□ 1.53
SNX1-210ENST00000560260 BRD1O95696 1058 aa24.62■■□□□ 1.53
SNX1-210ENST00000560260 F13A1P00488 732 aa24.62■■□□□ 1.53
SNX1-210ENST00000560260 CAPN2P17655 700 aa24.62■■□□□ 1.53
SNX1-210ENST00000560260 ACTR2P61160 394 aa24.62■■□□□ 1.53
SNX1-210ENST00000560260 PURAQ00577 322 aaKnown RBP24.62■■□□□ 1.53
SNX1-210ENST00000560260 ORC2Q13416 577 aaPredicted RBP24.62■■□□□ 1.53
SNX1-210ENST00000560260 CALCRLQ16602 461 aa24.62■■□□□ 1.53
SNX1-210ENST00000560260 PCSK9Q8NBP7 692 aaKnown RBP24.62■■□□□ 1.53
SNX1-210ENST00000560260 FERMT2Q96AC1 680 aa24.62■■□□□ 1.53
SNX1-210ENST00000560260 TEKT3Q9BXF9 490 aa24.62■■□□□ 1.53
SNX1-210ENST00000560260 FTOQ9C0B1 505 aaKnown RBP eCLIP24.62■■□□□ 1.53
SNX1-210ENST00000560260 DNAH12Q6ZR08 3092 aa24.62■■□□□ 1.53
SNX1-210ENST00000560260 ELP1O95163 1332 aa24.62■■□□□ 1.53
SNX1-210ENST00000560260 NOP56O00567 594 aaKnown RBP24.61■■□□□ 1.53
SNX1-210ENST00000560260 ZNF286BP0CG31 522 aa24.61■■□□□ 1.53
SNX1-210ENST00000560260 TRIM50Q86XT4 487 aa24.61■■□□□ 1.53
SNX1-210ENST00000560260 KAT2BQ92831 832 aa24.61■■□□□ 1.53
SNX1-210ENST00000560260 FAM20AQ96MK3 541 aa24.61■■□□□ 1.53
SNX1-210ENST00000560260 SCN10AQ9Y5Y9 1956 aa24.61■■□□□ 1.53
SNX1-210ENST00000560260 LGALS2P05162 132 aa24.61■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms