RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 PCDHGA12O60330 932 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 H2AFYO75367 372 aaKnown RBP4.04□□□□□ -1.76
TRAV28-201ENST00000557548 IL33O95760 270 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 LTFP02788 710 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 NBPF7P0C2Y1 421 aaPredicted RBP4.04□□□□□ -1.76
TRAV28-201ENST00000557548 SRFP11831 508 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 TRIM27P14373 513 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 PDE6AP16499 860 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 KRT15P19012 456 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 CYP2C19P33261 490 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 NEK3P51956 506 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 PCBP3P57721 371 aaKnown RBP4.04□□□□□ -1.76
TRAV28-201ENST00000557548 HTRA3P83110 453 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 PURAQ00577 322 aaKnown RBP4.04□□□□□ -1.76
TRAV28-201ENST00000557548 LRRC32Q14392 662 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 GRM3Q14832 879 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 CLUL1Q15846 466 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 CRY1Q16526 586 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 ARHGAP44Q17R89 818 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 ARHGAP29Q52LW3 1261 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 IL31Q6EBC2 164 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 FSTL4Q6MZW2 842 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 TMED8Q6PL24 325 aaPredicted RBP4.04□□□□□ -1.76
TRAV28-201ENST00000557548 BEND4Q6ZU67 534 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 CMTR2Q8IYT2 770 aaKnown RBP4.04□□□□□ -1.76
TRAV28-201ENST00000557548 PANK1Q8TE04 598 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 HSPBAP1Q96EW2 488 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 IL17RAQ96F46 866 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 MEGF10Q96KG7 1140 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 PTCHD1Q96NR3 888 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 BOCQ9BWV1 1114 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 CDADC1Q9BWV3 514 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 TOPORSQ9NS56 1045 aaPredicted RBP4.04□□□□□ -1.76
TRAV28-201ENST00000557548 BTG4Q9NY30 223 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 DDX20Q9UHI6 824 aaKnown RBP4.04□□□□□ -1.76
TRAV28-201ENST00000557548 ADGRE2Q9UHX3 823 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 TCFL5Q9UL49 500 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 PCDHGA9Q9Y5G4 932 aaKnown RBP4.04□□□□□ -1.76
TRAV28-201ENST00000557548 PCDHGA8Q9Y5G5 932 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 PCDHGA7Q9Y5G6 932 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 PCDHGA6Q9Y5G7 932 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 PCDHGA3Q9Y5H0 932 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 PCDHGA2Q9Y5H1 932 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 MRFAP1Q9Y605 127 aa4.04□□□□□ -1.76
TRAV28-201ENST00000557548 SSU72P8A0A1W2PR75 194 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 ZNF561-AS1K7EIQ3 104 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 ASGR2P07307 311 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 IFIT2P09913 472 aaKnown RBP4.03□□□□□ -1.76
TRAV28-201ENST00000557548 SLC9A1P19634 815 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 LPOP22079 712 aaPredicted RBP4.03□□□□□ -1.76
TRAV28-201ENST00000557548 TPP2P29144 1249 aaPredicted RBP4.03□□□□□ -1.76
TRAV28-201ENST00000557548 ADMP35318 185 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 BCL6P41182 706 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 JAM2P57087 298 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 RPL11P62913 178 aaKnown RBP4.03□□□□□ -1.76
TRAV28-201ENST00000557548 LACTBP83111 547 aaPredicted RBP4.03□□□□□ -1.76
TRAV28-201ENST00000557548 IRF9Q00978 393 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 LSAMPQ13449 338 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 ACAP2Q15057 778 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 TERF2Q15554 542 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 VPS72Q15906 364 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 KRTAP19-4Q3LI73 84 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 C4orf46Q504U0 113 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 C10orf62Q5T681 223 aaPredicted RBP4.03□□□□□ -1.76
TRAV28-201ENST00000557548 CDKAL1Q5VV42 579 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 TSPYL5Q86VY4 417 aaPredicted RBP4.03□□□□□ -1.76
TRAV28-201ENST00000557548 NLRP10Q86W26 655 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 OSTM1Q86WC4 334 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 RASSF3Q86WH2 238 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 AMOTL1Q8IY63 956 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 FAM9AQ8IZU1 332 aaPredicted RBP4.03□□□□□ -1.76
TRAV28-201ENST00000557548 USHBP1Q8N6Y0 703 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 KIAA1958Q8N8K9 716 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 NAT16Q8N8M0 369 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 LINC00116Q8NCU8 138 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 GATA6Q92908 595 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 EVI5LQ96CN4 794 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 SCYL1Q96KG9 808 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 TBC1D32Q96NH3 1257 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 SARGQ9BW04 601 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 JAM3Q9BX67 310 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 CDIP1Q9H305 208 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 TRIT1Q9H3H1 467 aaKnown RBP4.03□□□□□ -1.76
TRAV28-201ENST00000557548 SMURF1Q9HCE7 757 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 TOMM22Q9NS69 142 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 CLDND1Q9NY35 253 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 USP25Q9UHP3 1055 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 RCAN3Q9UKA8 241 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 FAM50BQ9Y247 325 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 INVSQ9Y283 1065 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 ZNF652Q9Y2D9 606 aa4.03□□□□□ -1.76
TRAV28-201ENST00000557548 TIMM13Q9Y5L4 95 aaPredicted RBP4.03□□□□□ -1.76
TRAV28-201ENST00000557548 FRMPD2Q68DX3 1309 aaPredicted RBP4.02□□□□□ -1.77
TRAV28-201ENST00000557548 SLC12A8A0AV02 714 aa4.02□□□□□ -1.77
TRAV28-201ENST00000557548 LCHNA4D1U4 455 aa4.02□□□□□ -1.77
TRAV28-201ENST00000557548 C7orf72A4D263 438 aa4.02□□□□□ -1.77
TRAV28-201ENST00000557548 GOLGA8AA7E2F4 631 aa4.02□□□□□ -1.77
TRAV28-201ENST00000557548 GOLGA8BA8MQT2 603 aa4.02□□□□□ -1.77
TRAV28-201ENST00000557548 IGF2BP3O00425 579 aaKnown RBP eCLIP4.02□□□□□ -1.77
TRAV28-201ENST00000557548 IFRD1O00458 451 aaPredicted RBP4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms