RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 PLEKHH3Q7Z736 793 aa6.29□□□□□ -1.4
PRPF39-210ENST00000556718 CIR1Q86X95 450 aaPredicted RBP6.29□□□□□ -1.4
PRPF39-210ENST00000556718 Q8N1Y9 231 aa6.29□□□□□ -1.4
PRPF39-210ENST00000556718 FAM169BQ8N8A8 192 aa6.29□□□□□ -1.4
PRPF39-210ENST00000556718 SRPK1Q96SB4 655 aaKnown RBP6.29□□□□□ -1.4
PRPF39-210ENST00000556718 YIPF4Q9BSR8 244 aa6.29□□□□□ -1.4
PRPF39-210ENST00000556718 TMEM168Q9H0V1 697 aa6.29□□□□□ -1.4
PRPF39-210ENST00000556718 L2HGDHQ9H9P8 463 aa6.29□□□□□ -1.4
PRPF39-210ENST00000556718 CROTQ9UKG9 612 aa6.29□□□□□ -1.4
PRPF39-210ENST00000556718 PPM1GO15355 546 aaPredicted RBP6.28□□□□□ -1.4
PRPF39-210ENST00000556718 EPHB4P54760 987 aa6.28□□□□□ -1.4
PRPF39-210ENST00000556718 CASP7P55210 303 aa6.28□□□□□ -1.4
PRPF39-210ENST00000556718 PPP2CBP62714 309 aa6.28□□□□□ -1.4
PRPF39-210ENST00000556718 PPP2CAP67775 309 aa6.28□□□□□ -1.4
PRPF39-210ENST00000556718 SERINC3Q13530 473 aa6.28□□□□□ -1.4
PRPF39-210ENST00000556718 RAB33AQ14088 237 aa6.28□□□□□ -1.4
PRPF39-210ENST00000556718 R3HDM1Q15032 1099 aaKnown RBP6.28□□□□□ -1.4
PRPF39-210ENST00000556718 POMZP3Q6PJE2 187 aa6.28□□□□□ -1.4
PRPF39-210ENST00000556718 KBTBD2Q8IY47 623 aa6.28□□□□□ -1.4
PRPF39-210ENST00000556718 BTN2A2Q8WVV5 523 aa6.28□□□□□ -1.4
PRPF39-210ENST00000556718 HNRNPLLQ8WVV9 542 aaKnown RBP6.28□□□□□ -1.4
PRPF39-210ENST00000556718 TRMT2BQ96GJ1 504 aaKnown RBP6.28□□□□□ -1.4
PRPF39-210ENST00000556718 NKX2-4Q9H2Z4 354 aa6.28□□□□□ -1.4
PRPF39-210ENST00000556718 DEF6Q9H4E7 631 aa6.28□□□□□ -1.4
PRPF39-210ENST00000556718 TCRBV5S2A0A599 114 aa6.27□□□□□ -1.41
PRPF39-210ENST00000556718 NOP56O00567 594 aaKnown RBP6.27□□□□□ -1.41
PRPF39-210ENST00000556718 SMAD7O15105 426 aaKnown RBP6.27□□□□□ -1.41
PRPF39-210ENST00000556718 TBX1O43435 398 aa6.27□□□□□ -1.41
PRPF39-210ENST00000556718 FZD7O75084 574 aa6.27□□□□□ -1.41
PRPF39-210ENST00000556718 CDK11BP21127 795 aaKnown RBP6.27□□□□□ -1.41
PRPF39-210ENST00000556718 ARHGEF18Q6ZSZ5 1173 aa6.27□□□□□ -1.41
PRPF39-210ENST00000556718 CRACR2BQ8N4Y2 399 aaPredicted RBP6.27□□□□□ -1.41
PRPF39-210ENST00000556718 PPP1R14AQ96A00 147 aa6.27□□□□□ -1.41
PRPF39-210ENST00000556718 CDK5RAP1Q96SZ6 601 aaKnown RBP6.27□□□□□ -1.41
PRPF39-210ENST00000556718 PCED1AQ9H1Q7 454 aa6.27□□□□□ -1.41
PRPF39-210ENST00000556718 NGRNQ9NPE2 291 aaKnown RBP6.27□□□□□ -1.41
PRPF39-210ENST00000556718 JADE2Q9NQC1 790 aa6.27□□□□□ -1.41
PRPF39-210ENST00000556718 DTLQ9NZJ0 730 aa6.27□□□□□ -1.41
PRPF39-210ENST00000556718 RBPJLQ9UBG7 517 aa6.27□□□□□ -1.41
PRPF39-210ENST00000556718 ZNF652Q9Y2D9 606 aa6.27□□□□□ -1.41
PRPF39-210ENST00000556718 TBX22Q9Y458 520 aa6.27□□□□□ -1.41
PRPF39-210ENST00000556718 KLF4O43474 513 aa6.26□□□□□ -1.41
PRPF39-210ENST00000556718 B4GALT4O60513 344 aa6.26□□□□□ -1.41
PRPF39-210ENST00000556718 LRG1P02750 347 aa6.26□□□□□ -1.41
PRPF39-210ENST00000556718 KLF10Q13118 480 aa6.26□□□□□ -1.41
PRPF39-210ENST00000556718 SPDYAQ5MJ70 313 aa6.26□□□□□ -1.41
PRPF39-210ENST00000556718 TEPPQ6URK8 271 aa6.26□□□□□ -1.41
PRPF39-210ENST00000556718 LRP10Q7Z4F1 713 aa6.26□□□□□ -1.41
PRPF39-210ENST00000556718 KREMEN2Q8NCW0 462 aa6.26□□□□□ -1.41
PRPF39-210ENST00000556718 DIO2Q92813 273 aa6.26□□□□□ -1.41
PRPF39-210ENST00000556718 TOE1Q96GM8 510 aaKnown RBP6.26□□□□□ -1.41
PRPF39-210ENST00000556718 TMEM169Q96HH4 297 aa6.26□□□□□ -1.41
PRPF39-210ENST00000556718 CLIC6Q96NY7 704 aa6.26□□□□□ -1.41
PRPF39-210ENST00000556718 MEGF9Q9H1U4 602 aa6.26□□□□□ -1.41
PRPF39-210ENST00000556718 ACTR10Q9NZ32 417 aa6.26□□□□□ -1.41
PRPF39-210ENST00000556718 ING1Q9UK53 422 aaPredicted RBP6.26□□□□□ -1.41
PRPF39-210ENST00000556718 HS3ST3A1Q9Y663 406 aa6.26□□□□□ -1.41
PRPF39-210ENST00000556718 PATE3B3GLJ2 98 aa6.25□□□□□ -1.41
PRPF39-210ENST00000556718 LCP1P13796 627 aa6.25□□□□□ -1.41
PRPF39-210ENST00000556718 ECI1P42126 302 aa6.25□□□□□ -1.41
PRPF39-210ENST00000556718 RBM10P98175 930 aaKnown RBP6.25□□□□□ -1.41
PRPF39-210ENST00000556718 SF1Q15637 639 aaKnown RBP6.25□□□□□ -1.41
PRPF39-210ENST00000556718 PRSS53Q2L4Q9 553 aa6.25□□□□□ -1.41
PRPF39-210ENST00000556718 CRB2Q5IJ48 1285 aa6.25□□□□□ -1.41
PRPF39-210ENST00000556718 PHF19Q5T6S3 580 aa6.25□□□□□ -1.41
PRPF39-210ENST00000556718 E4F1Q66K89 784 aaPredicted RBP6.25□□□□□ -1.41
PRPF39-210ENST00000556718 IQCEQ6IPM2 695 aa6.25□□□□□ -1.41
PRPF39-210ENST00000556718 TMC5Q6UXY8 1006 aa6.25□□□□□ -1.41
PRPF39-210ENST00000556718 RCBTB1Q8NDN9 531 aa6.25□□□□□ -1.41
PRPF39-210ENST00000556718 DEPDC7Q96QD5 511 aa6.25□□□□□ -1.41
PRPF39-210ENST00000556718 SLITRK6Q9H5Y7 841 aa6.25□□□□□ -1.41
PRPF39-210ENST00000556718 ZDHHC9Q9Y397 364 aa6.25□□□□□ -1.41
PRPF39-210ENST00000556718 HGSO14964 777 aaPredicted RBP6.24□□□□□ -1.41
PRPF39-210ENST00000556718 TADA3O75528 432 aa6.24□□□□□ -1.41
PRPF39-210ENST00000556718 IFRD2Q12894 506 aaPredicted RBP6.24□□□□□ -1.41
PRPF39-210ENST00000556718 FXNQ16595 210 aa6.24□□□□□ -1.41
PRPF39-210ENST00000556718 STEAP3Q658P3 488 aa6.24□□□□□ -1.41
PRPF39-210ENST00000556718 ANKRD13AQ8IZ07 590 aa6.24□□□□□ -1.41
PRPF39-210ENST00000556718 SNTG2Q9NY99 539 aa6.24□□□□□ -1.41
PRPF39-210ENST00000556718 COA3Q9Y2R0 106 aaPredicted RBP6.24□□□□□ -1.41
PRPF39-210ENST00000556718 PCDHB4Q9Y5E5 795 aa6.24□□□□□ -1.41
PRPF39-210ENST00000556718 CCDC85CA6NKD9 419 aa6.23□□□□□ -1.41
PRPF39-210ENST00000556718 MUSKO15146 869 aa6.23□□□□□ -1.41
PRPF39-210ENST00000556718 MEFVO15553 781 aaPredicted RBP6.23□□□□□ -1.41
PRPF39-210ENST00000556718 ZNF623O75123 536 aa6.23□□□□□ -1.41
PRPF39-210ENST00000556718 SNRPB2P08579 225 aaKnown RBP6.23□□□□□ -1.41
PRPF39-210ENST00000556718 COL6A1P12109 1028 aa6.23□□□□□ -1.41
PRPF39-210ENST00000556718 HSD3B2P26439 372 aa6.23□□□□□ -1.41
PRPF39-210ENST00000556718 SELENOPP49908 381 aa6.23□□□□□ -1.41
PRPF39-210ENST00000556718 ZNF143P52747 638 aaPredicted RBP6.23□□□□□ -1.41
PRPF39-210ENST00000556718 KRTAP1-1Q07627 177 aa6.23□□□□□ -1.41
PRPF39-210ENST00000556718 NFATC3Q12968 1075 aa6.23□□□□□ -1.41
PRPF39-210ENST00000556718 SLFN13Q68D06 897 aa6.23□□□□□ -1.41
PRPF39-210ENST00000556718 TRMT10BQ6PF06 316 aaKnown RBP6.23□□□□□ -1.41
PRPF39-210ENST00000556718 JAZF1Q86VZ6 243 aa6.23□□□□□ -1.41
PRPF39-210ENST00000556718 KLHL36Q8N4N3 616 aa6.23□□□□□ -1.41
PRPF39-210ENST00000556718 NUDT10Q8NFP7 164 aa6.23□□□□□ -1.41
PRPF39-210ENST00000556718 Q8TCH9 128 aa6.23□□□□□ -1.41
PRPF39-210ENST00000556718 NUDT11Q96G61 164 aa6.23□□□□□ -1.41
PRPF39-210ENST00000556718 CCDC113Q9H0I3 377 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms