RNA–Protein interactions for RNA: ENST00000556268.1

GTF2A1-204, Transcript of general transcription factor IIA subunit 1, humanhuman

TSL 5

Gene GTF2A1, Length 864 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-204ENST00000556268 CCDC84Q86UT8 332 aaPredicted RBP11.01□□□□□ -0.65
GTF2A1-204ENST00000556268 SMCR8Q8TEV9 937 aaPredicted RBP11.01□□□□□ -0.65
GTF2A1-204ENST00000556268 WDR18Q9BV38 432 aa11.01□□□□□ -0.65
GTF2A1-204ENST00000556268 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.01□□□□□ -0.655e-6■■■□□ 17
GTF2A1-204ENST00000556268 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.01□□□□□ -0.65
GTF2A1-204ENST00000556268 LAMA3Q16787 3333 aa11□□□□□ -0.65
GTF2A1-204ENST00000556268 SOX1O00570 391 aaPredicted RBP11□□□□□ -0.65
GTF2A1-204ENST00000556268 SRGAP3O43295 1099 aa11□□□□□ -0.65
GTF2A1-204ENST00000556268 GNAI3P08754 354 aa11□□□□□ -0.65
GTF2A1-204ENST00000556268 HOXA7P31268 230 aaPredicted RBP11□□□□□ -0.65
GTF2A1-204ENST00000556268 GRIA4P48058 902 aa11□□□□□ -0.65
GTF2A1-204ENST00000556268 GSTO1P78417 241 aa11□□□□□ -0.65
GTF2A1-204ENST00000556268 C19orf57Q0VDD7 668 aa11□□□□□ -0.65
GTF2A1-204ENST00000556268 PICALMQ13492 652 aa11□□□□□ -0.65
GTF2A1-204ENST00000556268 NECAB2Q7Z6G3 386 aa11□□□□□ -0.65
GTF2A1-204ENST00000556268 SPATA5Q8NB90 893 aa11□□□□□ -0.65
GTF2A1-204ENST00000556268 PAWRQ96IZ0 340 aaKnown RBP11□□□□□ -0.65
GTF2A1-204ENST00000556268 DNAJC25Q9H1X3 360 aa11□□□□□ -0.65
GTF2A1-204ENST00000556268 MORF4L1Q9UBU8 362 aa11□□□□□ -0.65
GTF2A1-204ENST00000556268 STAP2Q9UGK3 403 aa11□□□□□ -0.65
GTF2A1-204ENST00000556268 MYH2Q9UKX2 1941 aa10.99□□□□□ -0.65
GTF2A1-204ENST00000556268 LOC100996750A0A140TA64 210 aa10.99□□□□□ -0.65
GTF2A1-204ENST00000556268 ESRRAP11474 423 aaPredicted RBP10.99□□□□□ -0.65
GTF2A1-204ENST00000556268 MAPK1P28482 360 aa10.99□□□□□ -0.65
GTF2A1-204ENST00000556268 ARL4DP49703 201 aa10.99□□□□□ -0.65
GTF2A1-204ENST00000556268 KIAA0319Q5VV43 1072 aa10.99□□□□□ -0.65
GTF2A1-204ENST00000556268 FOXP4Q8IVH2 680 aaPredicted RBP10.99□□□□□ -0.65
GTF2A1-204ENST00000556268 CCDC74AQ96AQ1 378 aa10.99□□□□□ -0.65
GTF2A1-204ENST00000556268 NEUROD6Q96NK8 337 aa10.99□□□□□ -0.65
GTF2A1-204ENST00000556268 GDF15Q99988 308 aa10.99□□□□□ -0.65
GTF2A1-204ENST00000556268 KRTAP4-6Q9BYQ5 205 aa10.99□□□□□ -0.65
GTF2A1-204ENST00000556268 ASCC2Q9H1I8 757 aaPredicted RBP10.99□□□□□ -0.65
GTF2A1-204ENST00000556268 PI4KBQ9UBF8 816 aa10.99□□□□□ -0.65
GTF2A1-204ENST00000556268 HERC5Q9UII4 1024 aaKnown RBP10.99□□□□□ -0.65
GTF2A1-204ENST00000556268 RPTORQ8N122 1335 aa10.99□□□□□ -0.65
GTF2A1-204ENST00000556268 MGAMO43451 1857 aa10.99□□□□□ -0.65
GTF2A1-204ENST00000556268 A0A0C4DFX4 3053 aa10.99□□□□□ -0.65
GTF2A1-204ENST00000556268 COL2A1P02458 1487 aaPredicted RBP10.99□□□□□ -0.65
GTF2A1-204ENST00000556268 PHIPQ8WWQ0 1821 aa10.98□□□□□ -0.65
GTF2A1-204ENST00000556268 A0A096LPE4 126 aa10.98□□□□□ -0.65
GTF2A1-204ENST00000556268 A0A1W2PPZ6 126 aa10.98□□□□□ -0.65
GTF2A1-204ENST00000556268 IGSF3O75054 1194 aa10.98□□□□□ -0.65
GTF2A1-204ENST00000556268 XRCC5P13010 732 aaKnown RBP10.98□□□□□ -0.65
GTF2A1-204ENST00000556268 HMGCS2P54868 508 aa10.98□□□□□ -0.65
GTF2A1-204ENST00000556268 JAG1P78504 1218 aa10.98□□□□□ -0.65
GTF2A1-204ENST00000556268 PABPC4Q13310 644 aaKnown RBP eCLIP10.98□□□□□ -0.65
GTF2A1-204ENST00000556268 SPRED3Q2MJR0 410 aa10.98□□□□□ -0.65
GTF2A1-204ENST00000556268 PRSS36Q5K4E3 855 aa10.98□□□□□ -0.65
GTF2A1-204ENST00000556268 MAP3K21Q5TCX8 1036 aa10.98□□□□□ -0.65
GTF2A1-204ENST00000556268 UBL7Q96S82 380 aaPredicted RBP10.98□□□□□ -0.65
GTF2A1-204ENST00000556268 P2RX7Q99572 595 aaKnown RBP10.98□□□□□ -0.65
GTF2A1-204ENST00000556268 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.98□□□□□ -0.655e-7■■■■■ 39.7
GTF2A1-204ENST00000556268 EHD4Q9H223 541 aa10.98□□□□□ -0.65
GTF2A1-204ENST00000556268 DHX36Q9H2U1 1008 aaKnown RBP10.98□□□□□ -0.65
GTF2A1-204ENST00000556268 GINM1Q9NU53 330 aa10.98□□□□□ -0.65
GTF2A1-204ENST00000556268 OGDHLQ9ULD0 1010 aa10.98□□□□□ -0.65
GTF2A1-204ENST00000556268 C19orf81C9J6K1 198 aa10.97□□□□□ -0.65
GTF2A1-204ENST00000556268 HMGCRP04035 888 aa10.97□□□□□ -0.65
GTF2A1-204ENST00000556268 MCAMP43121 646 aa10.97□□□□□ -0.65
GTF2A1-204ENST00000556268 BACE1P56817 501 aa10.97□□□□□ -0.65
GTF2A1-204ENST00000556268 PI16Q6UXB8 463 aa10.97□□□□□ -0.65
GTF2A1-204ENST00000556268 DIS3LQ8TF46 1054 aaKnown RBP10.97□□□□□ -0.65
GTF2A1-204ENST00000556268 USP6NLQ92738 828 aa10.97□□□□□ -0.65
GTF2A1-204ENST00000556268 GPR108Q9NPR9 543 aa10.97□□□□□ -0.65
GTF2A1-204ENST00000556268 RAI14Q9P0K7 980 aa10.97□□□□□ -0.65
GTF2A1-204ENST00000556268 RBPJLQ9UBG7 517 aa10.97□□□□□ -0.65
GTF2A1-204ENST00000556268 MYH13Q9UKX3 1938 aa10.97□□□□□ -0.65
GTF2A1-204ENST00000556268 PTPRFP10586 1907 aa10.96□□□□□ -0.65
GTF2A1-204ENST00000556268 PNMA6EA0A0J9YXQ4 647 aa10.96□□□□□ -0.65
GTF2A1-204ENST00000556268 GNAI2P04899 355 aa10.96□□□□□ -0.65
GTF2A1-204ENST00000556268 UQCRFS1P1P0C7P4 283 aa10.96□□□□□ -0.65
GTF2A1-204ENST00000556268 G3BP1Q13283 466 aaKnown RBP eCLIP10.96□□□□□ -0.65
GTF2A1-204ENST00000556268 PRR23CQ6ZRP0 262 aa10.96□□□□□ -0.65
GTF2A1-204ENST00000556268 TEX11Q8IYF3 940 aa10.96□□□□□ -0.65
GTF2A1-204ENST00000556268 SH3RF3Q8TEJ3 882 aaPredicted RBP10.96□□□□□ -0.65
GTF2A1-204ENST00000556268 ZNF512BQ96KM6 892 aaPredicted RBP10.96□□□□□ -0.65
GTF2A1-204ENST00000556268 SOX17Q9H6I2 414 aaPredicted RBP10.96□□□□□ -0.65
GTF2A1-204ENST00000556268 AS3MTQ9HBK9 375 aa10.96□□□□□ -0.65
GTF2A1-204ENST00000556268 TXNRD2Q9NNW7 524 aa10.96□□□□□ -0.65
GTF2A1-204ENST00000556268 COL6A3P12111 3177 aa10.96□□□□□ -0.66
GTF2A1-204ENST00000556268 IPO8O15397 1037 aaKnown RBP10.95□□□□□ -0.66
GTF2A1-204ENST00000556268 BAG3O95817 575 aa10.95□□□□□ -0.66
GTF2A1-204ENST00000556268 ASNSP08243 561 aa10.95□□□□□ -0.66
GTF2A1-204ENST00000556268 PCDH1Q08174 1060 aa10.95□□□□□ -0.66
GTF2A1-204ENST00000556268 GORABQ5T7V8 394 aa10.95□□□□□ -0.66
GTF2A1-204ENST00000556268 GPRC5AQ8NFJ5 357 aa10.95□□□□□ -0.66
GTF2A1-204ENST00000556268 CEP41Q9BYV8 373 aa10.95□□□□□ -0.66
GTF2A1-204ENST00000556268 CLEC4MQ9H2X3 399 aaPredicted RBP10.95□□□□□ -0.66
GTF2A1-204ENST00000556268 DNAJC18Q9H819 358 aa10.95□□□□□ -0.66
GTF2A1-204ENST00000556268 LRP2BPQ9P2M1 347 aa10.95□□□□□ -0.66
GTF2A1-204ENST00000556268 COL6A1P12109 1028 aa10.94□□□□□ -0.66
GTF2A1-204ENST00000556268 TRIM27P14373 513 aa10.94□□□□□ -0.66
GTF2A1-204ENST00000556268 CYP2B6P20813 491 aa10.94□□□□□ -0.66
GTF2A1-204ENST00000556268 LRIT3Q3SXY7 679 aa10.94□□□□□ -0.66
GTF2A1-204ENST00000556268 SLC17A8Q8NDX2 589 aa10.94□□□□□ -0.66
GTF2A1-204ENST00000556268 TGFBRAP1Q8WUH2 860 aa10.94□□□□□ -0.66
GTF2A1-204ENST00000556268 TRIB2Q92519 343 aa10.94□□□□□ -0.66
GTF2A1-204ENST00000556268 RUSC1Q9BVN2 902 aa10.94□□□□□ -0.66
GTF2A1-204ENST00000556268 USP26Q9BXU7 913 aa10.94□□□□□ -0.66
GTF2A1-204ENST00000556268 DOCK2Q92608 1830 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms