RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 ST7Q9NRC1 585 aa6.65□□□□□ -1.34
SCFD1-217ENST00000555953 GPR27Q9NS67 375 aa6.65□□□□□ -1.34
SCFD1-217ENST00000555953 ASH2LQ9UBL3 628 aa6.65□□□□□ -1.34
SCFD1-217ENST00000555953 TCF3P15923 654 aa6.64□□□□□ -1.35
SCFD1-217ENST00000555953 ARID5AQ03989 594 aa6.64□□□□□ -1.35
SCFD1-217ENST00000555953 SURF1Q15526 300 aa6.64□□□□□ -1.35
SCFD1-217ENST00000555953 PLEKHH3Q7Z736 793 aa6.64□□□□□ -1.35
SCFD1-217ENST00000555953 PROSER1Q86XN7 944 aa6.64□□□□□ -1.35
SCFD1-217ENST00000555953 CHST13Q8NET6 341 aa6.64□□□□□ -1.35
SCFD1-217ENST00000555953 PHF20Q9BVI0 1012 aa6.64□□□□□ -1.35
SCFD1-217ENST00000555953 SLC6A20Q9NP91 592 aa6.64□□□□□ -1.35
SCFD1-217ENST00000555953 HSPBP1Q9NZL4 362 aa6.64□□□□□ -1.35
SCFD1-217ENST00000555953 KRIT1O00522 736 aa6.63□□□□□ -1.35
SCFD1-217ENST00000555953 SLC27A2O14975 620 aa6.63□□□□□ -1.35
SCFD1-217ENST00000555953 MAFKO60675 156 aa6.63□□□□□ -1.35
SCFD1-217ENST00000555953 CYP7B1O75881 506 aa6.63□□□□□ -1.35
SCFD1-217ENST00000555953 ZXDAP98168 799 aa6.63□□□□□ -1.35
SCFD1-217ENST00000555953 CYP4F22Q6NT55 531 aa6.63□□□□□ -1.35
SCFD1-217ENST00000555953 USP53Q70EK8 1073 aa6.63□□□□□ -1.35
SCFD1-217ENST00000555953 TTLL11Q8NHH1 800 aa6.63□□□□□ -1.35
SCFD1-217ENST00000555953 IGDCC4Q8TDY8 1250 aa6.63□□□□□ -1.35
SCFD1-217ENST00000555953 DVL3Q92997 716 aaPredicted RBP6.63□□□□□ -1.35
SCFD1-217ENST00000555953 WRNIP1Q96S55 665 aa6.63□□□□□ -1.35
SCFD1-217ENST00000555953 COL6A1P12109 1028 aa6.62□□□□□ -1.35
SCFD1-217ENST00000555953 GRIN1Q05586 938 aa6.62□□□□□ -1.35
SCFD1-217ENST00000555953 ICAM4Q14773 271 aa6.62□□□□□ -1.35
SCFD1-217ENST00000555953 DDR2Q16832 855 aa6.62□□□□□ -1.35
SCFD1-217ENST00000555953 PHF19Q5T6S3 580 aa6.62□□□□□ -1.35
SCFD1-217ENST00000555953 TRMT10BQ6PF06 316 aaKnown RBP6.62□□□□□ -1.35
SCFD1-217ENST00000555953 RBM12BQ8IXT5 1001 aaKnown RBP6.62□□□□□ -1.35
SCFD1-217ENST00000555953 KBTBD2Q8IY47 623 aa6.62□□□□□ -1.35
SCFD1-217ENST00000555953 CLEC4DQ8WXI8 215 aa6.62□□□□□ -1.35
SCFD1-217ENST00000555953 FTSJ1Q9UET6 329 aa6.62□□□□□ -1.35
SCFD1-217ENST00000555953 GPR42O15529 346 aa6.61□□□□□ -1.35
SCFD1-217ENST00000555953 DNAJA1P31689 397 aaKnown RBP6.61□□□□□ -1.35
SCFD1-217ENST00000555953 EPHB4P54760 987 aa6.61□□□□□ -1.35
SCFD1-217ENST00000555953 CDSNQ15517 529 aa6.61□□□□□ -1.35
SCFD1-217ENST00000555953 RSPO2Q6UXX9 243 aaPredicted RBP6.61□□□□□ -1.35
SCFD1-217ENST00000555953 OTOP3Q7RTS5 596 aa6.61□□□□□ -1.35
SCFD1-217ENST00000555953 TRIM48Q8IWZ4 208 aa6.61□□□□□ -1.35
SCFD1-217ENST00000555953 KLHL36Q8N4N3 616 aa6.61□□□□□ -1.35
SCFD1-217ENST00000555953 DTX3Q8N9I9 347 aa6.61□□□□□ -1.35
SCFD1-217ENST00000555953 NPEPPSL1A6NEC2 478 aa6.6□□□□□ -1.35
SCFD1-217ENST00000555953 AKAP8O43823 692 aaKnown RBP6.6□□□□□ -1.35
SCFD1-217ENST00000555953 PPP2CBP62714 309 aa6.6□□□□□ -1.35
SCFD1-217ENST00000555953 PPP2CAP67775 309 aa6.6□□□□□ -1.35
SCFD1-217ENST00000555953 NFATC3Q12968 1075 aa6.6□□□□□ -1.35
SCFD1-217ENST00000555953 HSP90AA2PQ14568 343 aaPredicted RBP6.6□□□□□ -1.35
SCFD1-217ENST00000555953 NTRK3Q16288 839 aa6.6□□□□□ -1.35
SCFD1-217ENST00000555953 KCNT2Q6UVM3 1135 aa6.6□□□□□ -1.35
SCFD1-217ENST00000555953 ANKS3Q6ZW76 656 aa6.6□□□□□ -1.35
SCFD1-217ENST00000555953 NUDT10Q8NFP7 164 aa6.6□□□□□ -1.35
SCFD1-217ENST00000555953 NUDT11Q96G61 164 aa6.6□□□□□ -1.35
SCFD1-217ENST00000555953 SGSM3Q96HU1 749 aa6.6□□□□□ -1.35
SCFD1-217ENST00000555953 PTPN18Q99952 460 aa6.6□□□□□ -1.35
SCFD1-217ENST00000555953 AARSD1Q9BTE6 412 aaKnown RBP6.6□□□□□ -1.35
SCFD1-217ENST00000555953 CD248Q9HCU0 757 aa6.6□□□□□ -1.35
SCFD1-217ENST00000555953 ARHGEF4Q9NR80 690 aa6.6□□□□□ -1.35
SCFD1-217ENST00000555953 R3HCC1Q9Y3T6 440 aaKnown RBP6.6□□□□□ -1.35
SCFD1-217ENST00000555953 PRODHO43272 600 aa6.59□□□□□ -1.35
SCFD1-217ENST00000555953 KLF4O43474 513 aa6.59□□□□□ -1.35
SCFD1-217ENST00000555953 LTFP02788 710 aa6.59□□□□□ -1.35
SCFD1-217ENST00000555953 COL6A2P12110 1019 aa6.59□□□□□ -1.35
SCFD1-217ENST00000555953 GRK2P25098 689 aa6.59□□□□□ -1.35
SCFD1-217ENST00000555953 GRK3P35626 688 aa6.59□□□□□ -1.35
SCFD1-217ENST00000555953 TUSC3Q13454 348 aa6.59□□□□□ -1.35
SCFD1-217ENST00000555953 VASNQ6EMK4 673 aa6.59□□□□□ -1.35
SCFD1-217ENST00000555953 LBX2Q6XYB7 198 aa6.59□□□□□ -1.35
SCFD1-217ENST00000555953 ARHGEF18Q6ZSZ5 1173 aa6.59□□□□□ -1.35
SCFD1-217ENST00000555953 CIR1Q86X95 450 aaPredicted RBP6.59□□□□□ -1.35
SCFD1-217ENST00000555953 DNERQ8NFT8 737 aa6.59□□□□□ -1.35
SCFD1-217ENST00000555953 UHMK1Q8TAS1 419 aaKnown RBP6.59□□□□□ -1.35
SCFD1-217ENST00000555953 DCAF4Q8WV16 495 aa6.59□□□□□ -1.35
SCFD1-217ENST00000555953 OSBP2Q969R2 916 aa6.59□□□□□ -1.35
SCFD1-217ENST00000555953 BARX1Q9HBU1 254 aaPredicted RBP6.59□□□□□ -1.35
SCFD1-217ENST00000555953 DLL4Q9NR61 685 aa6.59□□□□□ -1.35
SCFD1-217ENST00000555953 ZDHHC9Q9Y397 364 aa6.59□□□□□ -1.35
SCFD1-217ENST00000555953 TELO2Q9Y4R8 837 aa6.59□□□□□ -1.35
SCFD1-217ENST00000555953 B4GALT4O60513 344 aa6.58□□□□□ -1.36
SCFD1-217ENST00000555953 KLHL18O94889 574 aa6.58□□□□□ -1.36
SCFD1-217ENST00000555953 FGFR1P11362 822 aa6.58□□□□□ -1.36
SCFD1-217ENST00000555953 SPRED1Q7Z699 444 aa6.58□□□□□ -1.36
SCFD1-217ENST00000555953 SH3RF3Q8TEJ3 882 aaPredicted RBP6.58□□□□□ -1.36
SCFD1-217ENST00000555953 KISS1RQ969F8 398 aaPredicted RBP6.58□□□□□ -1.36
SCFD1-217ENST00000555953 KCNJ15Q99712 375 aa6.58□□□□□ -1.36
SCFD1-217ENST00000555953 MEGF9Q9H1U4 602 aa6.58□□□□□ -1.36
SCFD1-217ENST00000555953 JADE2Q9NQC1 790 aa6.58□□□□□ -1.36
SCFD1-217ENST00000555953 ADAM29Q9UKF5 820 aa6.58□□□□□ -1.36
SCFD1-217ENST00000555953 TSC22D4Q9Y3Q8 395 aa6.58□□□□□ -1.36
SCFD1-217ENST00000555953 BLACEA4D250 179 aa6.57□□□□□ -1.36
SCFD1-217ENST00000555953 NKRFO15226 690 aaKnown RBP eCLIP6.57□□□□□ -1.36
SCFD1-217ENST00000555953 CKMP06732 381 aa6.57□□□□□ -1.36
SCFD1-217ENST00000555953 GNAT1P11488 350 aa6.57□□□□□ -1.36
SCFD1-217ENST00000555953 PABPC1P11940 636 aaKnown RBP6.57□□□□□ -1.36
SCFD1-217ENST00000555953 FAHP16930 419 aa6.57□□□□□ -1.36
SCFD1-217ENST00000555953 SKIDA1Q1XH10 827 aa6.57□□□□□ -1.36
SCFD1-217ENST00000555953 KIZQ2M2Z5 673 aa6.57□□□□□ -1.36
SCFD1-217ENST00000555953 PAN2Q504Q3 1202 aaKnown RBP6.57□□□□□ -1.36
SCFD1-217ENST00000555953 HABP4Q5JVS0 413 aaKnown RBP6.57□□□□□ -1.36
SCFD1-217ENST00000555953 YOD1Q5VVQ6 348 aaPredicted RBP6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms