RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 PCDHA2Q9Y5H9 948 aa6.26□□□□□ -1.41
SCFD1-216ENST00000555550 NPIPB8E9PQR5 432 aa6.25□□□□□ -1.41
SCFD1-216ENST00000555550 MYO1BO43795 1136 aa6.25□□□□□ -1.41
SCFD1-216ENST00000555550 CYP7B1O75881 506 aa6.25□□□□□ -1.41
SCFD1-216ENST00000555550 GTF2A2P52657 109 aa6.25□□□□□ -1.41
SCFD1-216ENST00000555550 SF1Q15637 639 aaKnown RBP6.25□□□□□ -1.41
SCFD1-216ENST00000555550 PRSS53Q2L4Q9 553 aa6.25□□□□□ -1.41
SCFD1-216ENST00000555550 KREMEN2Q8NCW0 462 aa6.25□□□□□ -1.41
SCFD1-216ENST00000555550 ANAPC16Q96DE5 110 aa6.25□□□□□ -1.41
SCFD1-216ENST00000555550 SEC16BQ96JE7 1060 aa6.25□□□□□ -1.41
SCFD1-216ENST00000555550 MEFVO15553 781 aaPredicted RBP6.24□□□□□ -1.41
SCFD1-216ENST00000555550 SNRPB2P08579 225 aaKnown RBP6.24□□□□□ -1.41
SCFD1-216ENST00000555550 TCF3P15923 654 aa6.24□□□□□ -1.41
SCFD1-216ENST00000555550 CHRNA2Q15822 529 aa6.24□□□□□ -1.41
SCFD1-216ENST00000555550 E4F1Q66K89 784 aaPredicted RBP6.24□□□□□ -1.41
SCFD1-216ENST00000555550 VPS37DQ86XT2 251 aa6.24□□□□□ -1.41
SCFD1-216ENST00000555550 TMEM209Q96SK2 561 aa6.24□□□□□ -1.41
SCFD1-216ENST00000555550 SEMA4AQ9H3S1 761 aa6.24□□□□□ -1.41
SCFD1-216ENST00000555550 FOXS1O43638 330 aa6.23□□□□□ -1.41
SCFD1-216ENST00000555550 COL6A1P12109 1028 aa6.23□□□□□ -1.41
SCFD1-216ENST00000555550 HOXC12P31275 282 aa6.23□□□□□ -1.41
SCFD1-216ENST00000555550 LSAMPQ13449 338 aa6.23□□□□□ -1.41
SCFD1-216ENST00000555550 GNL2Q13823 731 aaKnown RBP6.23□□□□□ -1.41
SCFD1-216ENST00000555550 FHL2Q14192 279 aa6.23□□□□□ -1.41
SCFD1-216ENST00000555550 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.23□□□□□ -1.41
SCFD1-216ENST00000555550 CLDND1Q9NY35 253 aa6.23□□□□□ -1.41
SCFD1-216ENST00000555550 ADAM29Q9UKF5 820 aa6.23□□□□□ -1.41
SCFD1-216ENST00000555550 STRIP2Q9ULQ0 834 aa6.23□□□□□ -1.41
SCFD1-216ENST00000555550 CNOT4O95628 575 aaKnown RBP6.22□□□□□ -1.41
SCFD1-216ENST00000555550 SSBP05455 408 aaKnown RBP eCLIP6.22□□□□□ -1.41
SCFD1-216ENST00000555550 ITGAVP06756 1048 aa6.22□□□□□ -1.41
SCFD1-216ENST00000555550 ZNF143P52747 638 aaPredicted RBP6.22□□□□□ -1.41
SCFD1-216ENST00000555550 FOXE3Q13461 319 aa6.22□□□□□ -1.41
SCFD1-216ENST00000555550 IGFL4Q6B9Z1 124 aa6.22□□□□□ -1.41
SCFD1-216ENST00000555550 TCTN3Q6NUS6 607 aa6.22□□□□□ -1.41
SCFD1-216ENST00000555550 LRRC37BQ96QE4 947 aa6.22□□□□□ -1.41
SCFD1-216ENST00000555550 PODXL2Q9NZ53 605 aa6.22□□□□□ -1.41
SCFD1-216ENST00000555550 MYOTQ9UBF9 498 aa6.22□□□□□ -1.41
SCFD1-216ENST00000555550 H7BY64 318 aa6.21□□□□□ -1.42
SCFD1-216ENST00000555550 DGKIO75912 1065 aa6.21□□□□□ -1.42
SCFD1-216ENST00000555550 KLHL18O94889 574 aa6.21□□□□□ -1.42
SCFD1-216ENST00000555550 NAT2P11245 290 aa6.21□□□□□ -1.42
SCFD1-216ENST00000555550 KCNJ6P48051 423 aa6.21□□□□□ -1.42
SCFD1-216ENST00000555550 TGFB2P61812 414 aa6.21□□□□□ -1.42
SCFD1-216ENST00000555550 GRIN1Q05586 938 aa6.21□□□□□ -1.42
SCFD1-216ENST00000555550 KCNAB2Q13303 367 aa6.21□□□□□ -1.42
SCFD1-216ENST00000555550 EMC4Q5J8M3 183 aa6.21□□□□□ -1.42
SCFD1-216ENST00000555550 DENND5AQ6IQ26 1287 aa6.21□□□□□ -1.42
SCFD1-216ENST00000555550 RBM12BQ8IXT5 1001 aaKnown RBP6.21□□□□□ -1.42
SCFD1-216ENST00000555550 LRP2BPQ9P2M1 347 aa6.21□□□□□ -1.42
SCFD1-216ENST00000555550 ATF4P18848 351 aaPredicted RBP6.2□□□□□ -1.42
SCFD1-216ENST00000555550 LTBRP36941 435 aa6.2□□□□□ -1.42
SCFD1-216ENST00000555550 NCAPHQ15003 741 aa6.2□□□□□ -1.42
SCFD1-216ENST00000555550 NRN1LQ496H8 165 aa6.2□□□□□ -1.42
SCFD1-216ENST00000555550 SV2CQ496J9 727 aa6.2□□□□□ -1.42
SCFD1-216ENST00000555550 GPR155Q7Z3F1 870 aa6.2□□□□□ -1.42
SCFD1-216ENST00000555550 PROSER1Q86XN7 944 aa6.2□□□□□ -1.42
SCFD1-216ENST00000555550 PPIL6Q8IXY8 311 aa6.2□□□□□ -1.42
SCFD1-216ENST00000555550 CLEC4DQ8WXI8 215 aa6.2□□□□□ -1.42
SCFD1-216ENST00000555550 LMF1Q96S06 567 aa6.2□□□□□ -1.42
SCFD1-216ENST00000555550 WRNIP1Q96S55 665 aa6.2□□□□□ -1.42
SCFD1-216ENST00000555550 ADOQ96SZ5 270 aa6.2□□□□□ -1.42
SCFD1-216ENST00000555550 SMOC1Q9H4F8 434 aa6.2□□□□□ -1.42
SCFD1-216ENST00000555550 C11orf21Q9P2W6 132 aa6.2□□□□□ -1.42
SCFD1-216ENST00000555550 MRVI1Q9Y6F6 885 aa6.2□□□□□ -1.42
SCFD1-216ENST00000555550 PLSCR1O15162 318 aa6.19□□□□□ -1.42
SCFD1-216ENST00000555550 SCG5P05408 212 aa6.19□□□□□ -1.42
SCFD1-216ENST00000555550 PRKD1Q15139 912 aaPredicted RBP6.19□□□□□ -1.42
SCFD1-216ENST00000555550 HS1BP3Q53T59 392 aa6.19□□□□□ -1.42
SCFD1-216ENST00000555550 Q6ZUG5 572 aa6.19□□□□□ -1.42
SCFD1-216ENST00000555550 RALYLQ86SE5 291 aaKnown RBP6.19□□□□□ -1.42
SCFD1-216ENST00000555550 GIMAP8Q8ND71 665 aaPredicted RBP6.19□□□□□ -1.42
SCFD1-216ENST00000555550 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.19□□□□□ -1.42
SCFD1-216ENST00000555550 JAM3Q9BX67 310 aa6.19□□□□□ -1.42
SCFD1-216ENST00000555550 ZFR2Q9UPR6 939 aaKnown RBP6.19□□□□□ -1.42
SCFD1-216ENST00000555550 SLC27A2O14975 620 aa6.18□□□□□ -1.42
SCFD1-216ENST00000555550 CPP00450 1065 aa6.18□□□□□ -1.42
SCFD1-216ENST00000555550 CKMP06732 381 aa6.18□□□□□ -1.42
SCFD1-216ENST00000555550 GLRBP48167 497 aa6.18□□□□□ -1.42
SCFD1-216ENST00000555550 USP39Q53GS9 565 aaKnown RBP6.18□□□□□ -1.42
SCFD1-216ENST00000555550 ACBD5Q5T8D3 534 aaPredicted RBP6.18□□□□□ -1.42
SCFD1-216ENST00000555550 VASNQ6EMK4 673 aa6.18□□□□□ -1.42
SCFD1-216ENST00000555550 TAX1BP1Q86VP1 789 aa6.18□□□□□ -1.42
SCFD1-216ENST00000555550 ZNF227Q86WZ6 799 aa6.18□□□□□ -1.42
SCFD1-216ENST00000555550 EXTL1Q92935 676 aa6.18□□□□□ -1.42
SCFD1-216ENST00000555550 EPB41L1Q9H4G0 881 aa6.18□□□□□ -1.42
SCFD1-216ENST00000555550 SEC61A2Q9H9S3 476 aa6.18□□□□□ -1.42
SCFD1-216ENST00000555550 ASH2LQ9UBL3 628 aa6.18□□□□□ -1.42
SCFD1-216ENST00000555550 SMAD7O15105 426 aaKnown RBP6.17□□□□□ -1.42
SCFD1-216ENST00000555550 TGM1P22735 817 aa6.17□□□□□ -1.42
SCFD1-216ENST00000555550 SMAD2Q15796 467 aaKnown RBP6.17□□□□□ -1.42
SCFD1-216ENST00000555550 MIIPQ5JXC2 388 aa6.17□□□□□ -1.42
SCFD1-216ENST00000555550 C6orf15Q6UXA7 325 aaPredicted RBP6.17□□□□□ -1.42
SCFD1-216ENST00000555550 RNF207Q6ZRF8 634 aa6.17□□□□□ -1.42
SCFD1-216ENST00000555550 DTX3Q8N9I9 347 aa6.17□□□□□ -1.42
SCFD1-216ENST00000555550 TMEM145Q8NBT3 493 aa6.17□□□□□ -1.42
SCFD1-216ENST00000555550 ZNF503Q96F45 646 aa6.17□□□□□ -1.42
SCFD1-216ENST00000555550 CSRNP2Q9H175 543 aa6.17□□□□□ -1.42
SCFD1-216ENST00000555550 CDIP1Q9H305 208 aa6.17□□□□□ -1.42
SCFD1-216ENST00000555550 PTPN22Q9Y2R2 807 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms