RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 SREBF1P36956 1147 aa18.38■□□□□ 0.53
CCDC88C-209ENST00000554872 ANAPC15P60006 121 aa18.38■□□□□ 0.53
CCDC88C-209ENST00000554872 TOB2Q14106 344 aaPredicted RBP18.38■□□□□ 0.53
CCDC88C-209ENST00000554872 ZNF365Q70YC5 407 aa18.38■□□□□ 0.53
CCDC88C-209ENST00000554872 C7orf31Q8N865 590 aa18.38■□□□□ 0.53
CCDC88C-209ENST00000554872 AFAP1L1Q8TED9 768 aa18.38■□□□□ 0.53
CCDC88C-209ENST00000554872 CCDC12Q8WUD4 166 aaPredicted RBP18.38■□□□□ 0.53
CCDC88C-209ENST00000554872 ZMYND12Q9H0C1 365 aa18.38■□□□□ 0.53
CCDC88C-209ENST00000554872 JADE2Q9NQC1 790 aa18.38■□□□□ 0.53
CCDC88C-209ENST00000554872 RTEL1Q9NZ71 1219 aa18.38■□□□□ 0.53
CCDC88C-209ENST00000554872 HDAC6Q9UBN7 1215 aa18.38■□□□□ 0.53
CCDC88C-209ENST00000554872 FGBP02675 491 aa18.37■□□□□ 0.53
CCDC88C-209ENST00000554872 LGALS2P05162 132 aa18.37■□□□□ 0.53
CCDC88C-209ENST00000554872 CCL23P55773 120 aa18.37■□□□□ 0.53
CCDC88C-209ENST00000554872 PTK7Q13308 1070 aa18.37■□□□□ 0.53
CCDC88C-209ENST00000554872 MTMR1Q13613 665 aa18.37■□□□□ 0.53
CCDC88C-209ENST00000554872 PKN1Q16512 942 aa18.37■□□□□ 0.53
CCDC88C-209ENST00000554872 ZNF697Q5TEC3 545 aa18.37■□□□□ 0.53
CCDC88C-209ENST00000554872 CYFIP1Q7L576 1253 aa18.37■□□□□ 0.53
CCDC88C-209ENST00000554872 FAM177A1Q8N128 213 aaPredicted RBP18.37■□□□□ 0.53
CCDC88C-209ENST00000554872 CRYGNQ8WXF5 182 aa18.37■□□□□ 0.53
CCDC88C-209ENST00000554872 ZNF274Q96GC6 653 aaPredicted RBP18.37■□□□□ 0.53
CCDC88C-209ENST00000554872 ZFP91Q96JP5 570 aaPredicted RBP18.37■□□□□ 0.53
CCDC88C-209ENST00000554872 NOD1Q9Y239 953 aa18.37■□□□□ 0.53
CCDC88C-209ENST00000554872 STXBP5LQ9Y2K9 1186 aa18.37■□□□□ 0.53
CCDC88C-209ENST00000554872 SMCO2A6NFE2 343 aa18.36■□□□□ 0.53
CCDC88C-209ENST00000554872 H3BRB1 525 aa18.36■□□□□ 0.53
CCDC88C-209ENST00000554872 IQCF3P0C7M6 154 aa18.36■□□□□ 0.53
CCDC88C-209ENST00000554872 ACRP10323 421 aa18.36■□□□□ 0.53
CCDC88C-209ENST00000554872 NIPA1Q7RTP0 329 aa18.36■□□□□ 0.53
CCDC88C-209ENST00000554872 RETREG2Q8NC44 543 aa18.36■□□□□ 0.53
CCDC88C-209ENST00000554872 ANO3Q9BYT9 981 aa18.36■□□□□ 0.53
CCDC88C-209ENST00000554872 TUT1Q9H6E5 874 aaKnown RBP18.36■□□□□ 0.53
CCDC88C-209ENST00000554872 BCAS3Q9H6U6 928 aa18.36■□□□□ 0.53
CCDC88C-209ENST00000554872 NAP1L2Q9ULW6 460 aaPredicted RBP18.36■□□□□ 0.53
CCDC88C-209ENST00000554872 TRIM71Q2Q1W2 868 aaKnown RBP18.35■□□□□ 0.53
CCDC88C-209ENST00000554872 Q7L0L9 218 aa18.35■□□□□ 0.53
CCDC88C-209ENST00000554872 SERINC5Q86VE9 423 aa18.35■□□□□ 0.53
CCDC88C-209ENST00000554872 DHX38Q92620 1227 aaKnown RBP18.35■□□□□ 0.53
CCDC88C-209ENST00000554872 SCLYQ96I15 445 aa18.35■□□□□ 0.53
CCDC88C-209ENST00000554872 MXRA8Q9BRK3 442 aa18.35■□□□□ 0.53
CCDC88C-209ENST00000554872 ZNF215Q9UL58 517 aaPredicted RBP18.35■□□□□ 0.53
CCDC88C-209ENST00000554872 NFASCO94856 1347 aa18.34■□□□□ 0.53
CCDC88C-209ENST00000554872 ATP9AO75110 1047 aa18.34■□□□□ 0.53
CCDC88C-209ENST00000554872 SELPP16109 830 aa18.34■□□□□ 0.53
CCDC88C-209ENST00000554872 GNA11P29992 359 aa18.34■□□□□ 0.53
CCDC88C-209ENST00000554872 CEP55Q53EZ4 464 aa18.34■□□□□ 0.53
CCDC88C-209ENST00000554872 CCDC148Q8NFR7 591 aa18.34■□□□□ 0.53
CCDC88C-209ENST00000554872 ALG1Q9BT22 464 aa18.34■□□□□ 0.53
CCDC88C-209ENST00000554872 C6orf50Q9HD87 102 aa18.34■□□□□ 0.53
CCDC88C-209ENST00000554872 SH3GLB2Q9NR46 395 aa18.34■□□□□ 0.53
CCDC88C-209ENST00000554872 CHD9Q3L8U1 2897 aa18.34■□□□□ 0.53
CCDC88C-209ENST00000554872 CDH23Q9H251 3354 aa18.33■□□□□ 0.53
CCDC88C-209ENST00000554872 DOCK5Q9H7D0 1870 aa18.33■□□□□ 0.53
CCDC88C-209ENST00000554872 EMSYQ7Z589 1322 aa18.33■□□□□ 0.53
CCDC88C-209ENST00000554872 MEIS1O00470 390 aa18.33■□□□□ 0.52
CCDC88C-209ENST00000554872 CAND2O75155 1236 aa18.33■□□□□ 0.52
CCDC88C-209ENST00000554872 CXCL10P02778 98 aa18.33■□□□□ 0.52
CCDC88C-209ENST00000554872 CYP3A4P08684 503 aa18.33■□□□□ 0.52
CCDC88C-209ENST00000554872 DNAJB2P25686 324 aa18.33■□□□□ 0.52
CCDC88C-209ENST00000554872 AKAP17AQ02040 695 aaKnown RBP18.33■□□□□ 0.52
CCDC88C-209ENST00000554872 LRRC8DQ7L1W4 858 aa18.33■□□□□ 0.52
CCDC88C-209ENST00000554872 REXO1Q8N1G1 1221 aaKnown RBP18.33■□□□□ 0.52
CCDC88C-209ENST00000554872 BICD2Q8TD16 824 aa18.33■□□□□ 0.52
CCDC88C-209ENST00000554872 PPP1R13LQ8WUF5 828 aa18.33■□□□□ 0.52
CCDC88C-209ENST00000554872 GUCD1Q96NT3 240 aa18.33■□□□□ 0.52
CCDC88C-209ENST00000554872 UPF3BQ9BZI7 483 aaKnown RBP18.33■□□□□ 0.52
CCDC88C-209ENST00000554872 KCNH7Q9NS40 1196 aa18.33■□□□□ 0.52
CCDC88C-209ENST00000554872 CXXC1Q9P0U4 656 aaPredicted RBP18.33■□□□□ 0.52
CCDC88C-209ENST00000554872 SORBS3O60504 671 aa18.32■□□□□ 0.52
CCDC88C-209ENST00000554872 BAIAP3O94812 1187 aa18.32■□□□□ 0.52
CCDC88C-209ENST00000554872 SMIM10L2AP0DMW4 78 aa18.32■□□□□ 0.52
CCDC88C-209ENST00000554872 SMIM10L2BP0DMW5 78 aa18.32■□□□□ 0.52
CCDC88C-209ENST00000554872 CKBP12277 381 aa18.32■□□□□ 0.52
CCDC88C-209ENST00000554872 ACTN1P12814 892 aa18.32■□□□□ 0.52
CCDC88C-209ENST00000554872 ADAM17P78536 824 aa18.32■□□□□ 0.52
CCDC88C-209ENST00000554872 ARHGAP4P98171 946 aa18.32■□□□□ 0.52
CCDC88C-209ENST00000554872 HIC1Q14526 733 aa18.32■□□□□ 0.52
CCDC88C-209ENST00000554872 TRAF7Q6Q0C0 670 aa18.32■□□□□ 0.52
CCDC88C-209ENST00000554872 SEPT1Q8WYJ6 367 aa18.32■□□□□ 0.52
CCDC88C-209ENST00000554872 PHKBQ93100 1093 aa18.32■□□□□ 0.52
CCDC88C-209ENST00000554872 TTYH1Q9H313 450 aaPredicted RBP18.32■□□□□ 0.52
CCDC88C-209ENST00000554872 SEMA6BQ9H3T3 888 aa18.32■□□□□ 0.52
CCDC88C-209ENST00000554872 GSTTP1A0A1W2PQM5 241 aa18.31■□□□□ 0.52
CCDC88C-209ENST00000554872 C17orf102A2RUQ5 167 aa18.31■□□□□ 0.52
CCDC88C-209ENST00000554872 LGR5O75473 907 aa18.31■□□□□ 0.52
CCDC88C-209ENST00000554872 GNAT1P11488 350 aa18.31■□□□□ 0.52
CCDC88C-209ENST00000554872 TCF7P36402 384 aaPredicted RBP18.31■□□□□ 0.52
CCDC88C-209ENST00000554872 CHMP4BP1P59074 171 aa18.31■□□□□ 0.52
CCDC88C-209ENST00000554872 GPNMBQ14956 572 aa18.31■□□□□ 0.52
CCDC88C-209ENST00000554872 RAB30Q15771 203 aa18.31■□□□□ 0.52
CCDC88C-209ENST00000554872 OTOP2Q7RTS6 562 aa18.31■□□□□ 0.52
CCDC88C-209ENST00000554872 TRIM22Q8IYM9 498 aa18.31■□□□□ 0.52
CCDC88C-209ENST00000554872 PBX4Q9BYU1 374 aa18.31■□□□□ 0.52
CCDC88C-209ENST00000554872 NCOA5Q9HCD5 579 aaKnown RBP18.31■□□□□ 0.52
CCDC88C-209ENST00000554872 JPH1Q9HDC5 661 aaPredicted RBP18.31■□□□□ 0.52
CCDC88C-209ENST00000554872 PDRG1Q9NUG6 133 aa18.31■□□□□ 0.52
CCDC88C-209ENST00000554872 TMEM260Q9NX78 707 aa18.31■□□□□ 0.52
CCDC88C-209ENST00000554872 SLC4A7Q9Y6M7 1214 aa18.31■□□□□ 0.52
CCDC88C-209ENST00000554872 SCN5AQ14524 2016 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms