RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 TRIM6-TRIM34B2RNG4 842 aa13.17□□□□□ -0.3
VPS33B-204ENST00000554660 H3BQ06 376 aaPredicted RBP13.17□□□□□ -0.3
VPS33B-204ENST00000554660 HAS3O00219 553 aa13.17□□□□□ -0.3
VPS33B-204ENST00000554660 HIP1O00291 1037 aa13.17□□□□□ -0.3
VPS33B-204ENST00000554660 EFCAB14O75071 495 aa13.17□□□□□ -0.3
VPS33B-204ENST00000554660 LGR5O75473 907 aa13.17□□□□□ -0.3
VPS33B-204ENST00000554660 QRICH1Q2TAL8 776 aa13.17□□□□□ -0.3
VPS33B-204ENST00000554660 ZSCAN23Q3MJ62 389 aa13.17□□□□□ -0.3
VPS33B-204ENST00000554660 ARHGEF16Q5VV41 709 aa13.17□□□□□ -0.3
VPS33B-204ENST00000554660 DHX37Q8IY37 1157 aaKnown RBP13.17□□□□□ -0.3
VPS33B-204ENST00000554660 ADGRF4Q8IZF3 695 aa13.17□□□□□ -0.3
VPS33B-204ENST00000554660 PNMA1Q8ND90 353 aa13.17□□□□□ -0.3
VPS33B-204ENST00000554660 PPTC7Q8NI37 304 aa13.17□□□□□ -0.3
VPS33B-204ENST00000554660 EMID1Q96A84 441 aaPredicted RBP13.17□□□□□ -0.3
VPS33B-204ENST00000554660 PDLIM2Q96JY6 352 aa13.17□□□□□ -0.3
VPS33B-204ENST00000554660 TTC14Q96N46 770 aa13.17□□□□□ -0.3
VPS33B-204ENST00000554660 UIMC1Q96RL1 719 aa13.17□□□□□ -0.3
VPS33B-204ENST00000554660 TM6SF1Q9BZW5 370 aa13.17□□□□□ -0.3
VPS33B-204ENST00000554660 LAMA4Q16363 1823 aa13.17□□□□□ -0.3
VPS33B-204ENST00000554660 DHX16O60231 1041 aaKnown RBP13.16□□□□□ -0.3
VPS33B-204ENST00000554660 MCM5P33992 734 aa13.16□□□□□ -0.3
VPS33B-204ENST00000554660 MKRN4PQ13434 485 aaPredicted RBP13.16□□□□□ -0.3
VPS33B-204ENST00000554660 ALYREFQ86V81 257 aaKnown RBP13.16□□□□□ -0.3
VPS33B-204ENST00000554660 TICAM2Q86XR7 235 aa13.16□□□□□ -0.3
VPS33B-204ENST00000554660 DBF4BQ8NFT6 615 aa13.16□□□□□ -0.3
VPS33B-204ENST00000554660 ESR2Q92731 530 aa13.16□□□□□ -0.3
VPS33B-204ENST00000554660 IWS1Q96ST2 819 aa13.16□□□□□ -0.3
VPS33B-204ENST00000554660 PXMP2Q9NR77 195 aa13.16□□□□□ -0.3
VPS33B-204ENST00000554660 INSL6Q9Y581 213 aa13.16□□□□□ -0.3
VPS33B-204ENST00000554660 MICAL3Q7RTP6 2002 aa13.16□□□□□ -0.3
VPS33B-204ENST00000554660 CFBP00751 764 aa13.15□□□□□ -0.3
VPS33B-204ENST00000554660 AMHP03971 560 aa13.15□□□□□ -0.3
VPS33B-204ENST00000554660 NR3C2P08235 984 aa13.15□□□□□ -0.3
VPS33B-204ENST00000554660 THPOP40225 353 aa13.15□□□□□ -0.3
VPS33B-204ENST00000554660 TERF1P54274 439 aa13.15□□□□□ -0.3
VPS33B-204ENST00000554660 LAMC2Q13753 1193 aa13.15□□□□□ -0.3
VPS33B-204ENST00000554660 HSDL1Q3SXM5 330 aa13.15□□□□□ -0.3
VPS33B-204ENST00000554660 EPC2Q52LR7 807 aa13.15□□□□□ -0.3
VPS33B-204ENST00000554660 LRSAM1Q6UWE0 723 aa13.15□□□□□ -0.3
VPS33B-204ENST00000554660 ZSCAN30Q86W11 494 aa13.15□□□□□ -0.3
VPS33B-204ENST00000554660 MCF2L2Q86YR7 1114 aa13.15□□□□□ -0.3
VPS33B-204ENST00000554660 SP7Q8TDD2 431 aaPredicted RBP13.15□□□□□ -0.3
VPS33B-204ENST00000554660 RILPL2Q969X0 211 aa13.15□□□□□ -0.3
VPS33B-204ENST00000554660 MRPL38Q96DV4 380 aaKnown RBP13.15□□□□□ -0.3
VPS33B-204ENST00000554660 RNF41Q9H4P4 317 aaPredicted RBP13.15□□□□□ -0.3
VPS33B-204ENST00000554660 MUC6Q6W4X9 2439 aa13.15□□□□□ -0.3
VPS33B-204ENST00000554660 EMSYQ7Z589 1322 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 GRXCR2A6NFK2 248 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 RSPH10B2B2RC85 870 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 OPLAHO14841 1288 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 KDM4AO75164 1064 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 EIF3JO75822 258 aaKnown RBP13.14□□□□□ -0.31
VPS33B-204ENST00000554660 RGS20O76081 388 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 GGPS1O95749 300 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 CTSHP09668 335 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 RSPH10BP0C881 870 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 PCP11498 1178 aaKnown RBP13.14□□□□□ -0.31
VPS33B-204ENST00000554660 MYCLP12524 364 aaPredicted RBP13.14□□□□□ -0.31
VPS33B-204ENST00000554660 HTRA4P83105 476 aaPredicted RBP13.14□□□□□ -0.31
VPS33B-204ENST00000554660 EP400NLQ6ZTU2 488 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 SERINC5Q86VE9 423 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 FBXO11Q86XK2 927 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 DGKHQ86XP1 1220 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 IL31RAQ8NI17 732 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 NEK9Q8TD19 979 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 ZFP91Q96JP5 570 aaPredicted RBP13.14□□□□□ -0.31
VPS33B-204ENST00000554660 ZSCAN31Q96LW9 406 aaPredicted RBP13.14□□□□□ -0.31
VPS33B-204ENST00000554660 SPATA33Q96N06 139 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 YME1L1Q96TA2 773 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 OSBPL7Q9BZF2 842 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 LSG1Q9H089 658 aaKnown RBP13.14□□□□□ -0.31
VPS33B-204ENST00000554660 KAT14Q9H8E8 782 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 JMJD4Q9H9V9 463 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 VAT1LQ9HCJ6 419 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 MRPL11Q9Y3B7 192 aaKnown RBP13.14□□□□□ -0.31
VPS33B-204ENST00000554660 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.14□□□□□ -0.31
VPS33B-204ENST00000554660 ATP6V1DQ9Y5K8 247 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 WDFY4Q6ZS81 3184 aa13.14□□□□□ -0.31
VPS33B-204ENST00000554660 COL4A6Q14031 1691 aa13.13□□□□□ -0.31
VPS33B-204ENST00000554660 B4E1Z4 1266 aa13.13□□□□□ -0.31
VPS33B-204ENST00000554660 LETM1O95202 739 aaPredicted RBP13.13□□□□□ -0.31
VPS33B-204ENST00000554660 HOXD8P13378 290 aaPredicted RBP13.13□□□□□ -0.31
VPS33B-204ENST00000554660 UBA1P22314 1058 aaKnown RBP13.13□□□□□ -0.31
VPS33B-204ENST00000554660 PTPROQ16827 1216 aa13.13□□□□□ -0.31
VPS33B-204ENST00000554660 CSPP1Q1MSJ5 1256 aa13.13□□□□□ -0.31
VPS33B-204ENST00000554660 TIGD5Q53EQ6 642 aa13.13□□□□□ -0.31
VPS33B-204ENST00000554660 ASPRV1Q53RT3 343 aa13.13□□□□□ -0.31
VPS33B-204ENST00000554660 PLEKHG4Q58EX7 1191 aa13.13□□□□□ -0.31
VPS33B-204ENST00000554660 TCEAL5Q5H9L2 206 aa13.13□□□□□ -0.31
VPS33B-204ENST00000554660 MYSM1Q5VVJ2 828 aa13.13□□□□□ -0.31
VPS33B-204ENST00000554660 CAVIN1Q6NZI2 390 aaKnown RBP13.13□□□□□ -0.31
VPS33B-204ENST00000554660 ENAHQ8N8S7 591 aaPredicted RBP13.13□□□□□ -0.31
VPS33B-204ENST00000554660 BANK1Q8NDB2 785 aa13.13□□□□□ -0.31
VPS33B-204ENST00000554660 GPKOWQ92917 476 aaPredicted RBP eCLIP13.13□□□□□ -0.31
VPS33B-204ENST00000554660 PDCD2LQ9BRP1 358 aa13.13□□□□□ -0.31
VPS33B-204ENST00000554660 MAF1Q9H063 256 aa13.13□□□□□ -0.31
VPS33B-204ENST00000554660 SH2B1Q9NRF2 756 aaPredicted RBP13.13□□□□□ -0.31
VPS33B-204ENST00000554660 MYH6P13533 1939 aa13.13□□□□□ -0.31
VPS33B-204ENST00000554660 NLRC5Q86WI3 1866 aa13.12□□□□□ -0.31
VPS33B-204ENST00000554660 ATG2AQ2TAZ0 1938 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms