RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 RESP18Q5W5W9 173 aa16.33■□□□□ 0.2
SHMT2-210ENST00000553950 KRT79Q5XKE5 535 aa16.33■□□□□ 0.2
SHMT2-210ENST00000553950 ZNF746Q6NUN9 644 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-210ENST00000553950 SEPT14Q6ZU15 432 aa16.33■□□□□ 0.2
SHMT2-210ENST00000553950 SMAP1Q8IYB5 467 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-210ENST00000553950 DNAJC5GQ8N7S2 189 aa16.33■□□□□ 0.2
SHMT2-210ENST00000553950 RASSF8Q8NHQ8 419 aa16.33■□□□□ 0.2
SHMT2-210ENST00000553950 RAET1EQ8TD07 263 aa16.33■□□□□ 0.2
SHMT2-210ENST00000553950 CSRNP2Q9H175 543 aa16.33■□□□□ 0.2
SHMT2-210ENST00000553950 JPH1Q9HDC5 661 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-210ENST00000553950 CCDC39Q9UFE4 941 aa16.33■□□□□ 0.2
SHMT2-210ENST00000553950 RBM47A0AV96 593 aaKnown RBP16.32■□□□□ 0.2
SHMT2-210ENST00000553950 WDR64B1ANS9 1081 aa16.32■□□□□ 0.2
SHMT2-210ENST00000553950 RGS20O76081 388 aa16.32■□□□□ 0.2
SHMT2-210ENST00000553950 KCNA2P16389 499 aa16.32■□□□□ 0.2
SHMT2-210ENST00000553950 MUTP22033 750 aa16.32■□□□□ 0.2
SHMT2-210ENST00000553950 TECP42680 631 aa16.32■□□□□ 0.2
SHMT2-210ENST00000553950 FSIP1Q8NA03 581 aa16.32■□□□□ 0.2
SHMT2-210ENST00000553950 SLAIN1Q8ND83 568 aa16.32■□□□□ 0.2
SHMT2-210ENST00000553950 PXYLP1Q8TE99 480 aa16.32■□□□□ 0.2
SHMT2-210ENST00000553950 SYAP1Q96A49 352 aaPredicted RBP16.32■□□□□ 0.2
SHMT2-210ENST00000553950 CALML4Q96GE6 196 aa16.32■□□□□ 0.2
SHMT2-210ENST00000553950 CDK5RAP3Q96JB5 506 aa16.32■□□□□ 0.2
SHMT2-210ENST00000553950 CCSER1Q9C0I3 900 aa16.32■□□□□ 0.2
SHMT2-210ENST00000553950 NT5C3AQ9H0P0 336 aa16.32■□□□□ 0.2
SHMT2-210ENST00000553950 USP25Q9UHP3 1055 aa16.32■□□□□ 0.2
SHMT2-210ENST00000553950 VAV3Q9UKW4 847 aa16.32■□□□□ 0.2
SHMT2-210ENST00000553950 ZHX1Q9UKY1 873 aaPredicted RBP16.32■□□□□ 0.2
SHMT2-210ENST00000553950 FAM237AA0A1B0GTK4 181 aa16.31■□□□□ 0.2
SHMT2-210ENST00000553950 DKC1O60832 514 aaKnown RBP eCLIP16.31■□□□□ 0.2
SHMT2-210ENST00000553950 ECM2O94769 699 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-210ENST00000553950 HMGCRP04035 888 aa16.31■□□□□ 0.2
SHMT2-210ENST00000553950 UBA1P22314 1058 aaKnown RBP16.31■□□□□ 0.2
SHMT2-210ENST00000553950 FAM160A1Q05DH4 1040 aa16.31■□□□□ 0.2
SHMT2-210ENST00000553950 SEMA3FQ13275 785 aa16.31■□□□□ 0.2
SHMT2-210ENST00000553950 ACVR2BQ13705 512 aa16.31■□□□□ 0.2
SHMT2-210ENST00000553950 NCAPH2Q6IBW4 605 aa16.31■□□□□ 0.2
SHMT2-210ENST00000553950 METTL7BQ6UX53 244 aa16.31■□□□□ 0.2
SHMT2-210ENST00000553950 EEPD1Q7L9B9 569 aa16.31■□□□□ 0.2
SHMT2-210ENST00000553950 SNX29Q8TEQ0 813 aa16.31■□□□□ 0.2
SHMT2-210ENST00000553950 SYMPKQ92797 1274 aaKnown RBP16.31■□□□□ 0.2
SHMT2-210ENST00000553950 SLC9A2Q9UBY0 812 aa16.31■□□□□ 0.2
SHMT2-210ENST00000553950 POTEMA6NI47 508 aa16.3■□□□□ 0.2
SHMT2-210ENST00000553950 SNAI1O95863 264 aaPredicted RBP16.3■□□□□ 0.2
SHMT2-210ENST00000553950 TXNP10599 105 aaKnown RBP16.3■□□□□ 0.2
SHMT2-210ENST00000553950 SPIRE1Q08AE8 756 aa16.3■□□□□ 0.2
SHMT2-210ENST00000553950 ITGB3BPQ13352 177 aaPredicted RBP16.3■□□□□ 0.2
SHMT2-210ENST00000553950 IQSEC1Q6DN90 963 aa16.3■□□□□ 0.2
SHMT2-210ENST00000553950 SHC4Q6S5L8 630 aa16.3■□□□□ 0.2
SHMT2-210ENST00000553950 OTOP1Q7RTM1 612 aa16.3■□□□□ 0.2
SHMT2-210ENST00000553950 MIER3Q7Z3K6 550 aa16.3■□□□□ 0.2
SHMT2-210ENST00000553950 CABP7Q86V35 215 aa16.3■□□□□ 0.2
SHMT2-210ENST00000553950 CLIC6Q96NY7 704 aa16.3■□□□□ 0.2
SHMT2-210ENST00000553950 KATNBL1Q9H079 304 aa16.3■□□□□ 0.2
SHMT2-210ENST00000553950 CUEDC2Q9H467 287 aa16.3■□□□□ 0.2
SHMT2-210ENST00000553950 MAGEF1Q9HAY2 307 aa16.3■□□□□ 0.2
SHMT2-210ENST00000553950 DDX19AQ9NUU7 478 aaKnown RBP16.3■□□□□ 0.2
SHMT2-210ENST00000553950 GABRQQ9UN88 632 aa16.3■□□□□ 0.2
SHMT2-210ENST00000553950 DDX49Q9Y6V7 483 aaKnown RBP16.3■□□□□ 0.2
SHMT2-210ENST00000553950 FRMPD3Q5JV73 1810 aa16.3■□□□□ 0.2
SHMT2-210ENST00000553950 KINO60870 393 aaKnown RBP16.29■□□□□ 0.2
SHMT2-210ENST00000553950 GGPS1O95749 300 aa16.29■□□□□ 0.2
SHMT2-210ENST00000553950 GH1P01241 217 aa16.29■□□□□ 0.2
SHMT2-210ENST00000553950 IGHA2P01877 340 aa16.29■□□□□ 0.2
SHMT2-210ENST00000553950 AKR1A1P14550 325 aa16.29■□□□□ 0.2
SHMT2-210ENST00000553950 PFKFB1P16118 471 aa16.29■□□□□ 0.2
SHMT2-210ENST00000553950 SYKP43405 635 aa16.29■□□□□ 0.2
SHMT2-210ENST00000553950 EPHA7Q15375 998 aa16.29■□□□□ 0.2
SHMT2-210ENST00000553950 IL17AQ16552 155 aa16.29■□□□□ 0.2
SHMT2-210ENST00000553950 KLHL40Q2TBA0 621 aa16.29■□□□□ 0.2
SHMT2-210ENST00000553950 MIS18BP1Q6P0N0 1132 aa16.29■□□□□ 0.2
SHMT2-210ENST00000553950 B3GNT9Q6UX72 402 aa16.29■□□□□ 0.2
SHMT2-210ENST00000553950 TRIB2Q92519 343 aa16.29■□□□□ 0.2
SHMT2-210ENST00000553950 EMID1Q96A84 441 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-210ENST00000553950 ZFP91Q96JP5 570 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-210ENST00000553950 UNC45AQ9H3U1 944 aa16.29■□□□□ 0.2
SHMT2-210ENST00000553950 MLXIPQ9HAP2 919 aa16.29■□□□□ 0.2
SHMT2-210ENST00000553950 TUFT1Q9NNX1 390 aa16.29■□□□□ 0.2
SHMT2-210ENST00000553950 PKD2L1Q9P0L9 805 aa16.29■□□□□ 0.2
SHMT2-210ENST00000553950 HOOK1Q9UJC3 728 aaKnown RBP16.29■□□□□ 0.2
SHMT2-210ENST00000553950 DDX41Q9UJV9 622 aaKnown RBP16.29■□□□□ 0.2
SHMT2-210ENST00000553950 KCNH3Q9ULD8 1083 aa16.29■□□□□ 0.2
SHMT2-210ENST00000553950 FAM184BQ9ULE4 1060 aa16.29■□□□□ 0.2
SHMT2-210ENST00000553950 HPSEQ9Y251 543 aa16.29■□□□□ 0.2
SHMT2-210ENST00000553950 TRIM17Q9Y577 477 aa16.29■□□□□ 0.2
SHMT2-210ENST00000553950 ARID2Q68CP9 1835 aa16.29■□□□□ 0.2
SHMT2-210ENST00000553950 NOP56O00567 594 aaKnown RBP16.28■□□□□ 0.2
SHMT2-210ENST00000553950 DHX15O43143 795 aaKnown RBP16.28■□□□□ 0.2
SHMT2-210ENST00000553950 CHMP2AO43633 222 aa16.28■□□□□ 0.2
SHMT2-210ENST00000553950 ADCY3O60266 1144 aa16.28■□□□□ 0.2
SHMT2-210ENST00000553950 FARP2O94887 1054 aaPredicted RBP16.28■□□□□ 0.2
SHMT2-210ENST00000553950 PSAPP07602 524 aa16.28■□□□□ 0.2
SHMT2-210ENST00000553950 RPA1P27694 616 aa16.28■□□□□ 0.2
SHMT2-210ENST00000553950 GRIN1Q05586 938 aa16.28■□□□□ 0.2
SHMT2-210ENST00000553950 LAMC2Q13753 1193 aa16.28■□□□□ 0.2
SHMT2-210ENST00000553950 CCL14Q16627 93 aa16.28■□□□□ 0.2
SHMT2-210ENST00000553950 DUSP28Q4G0W2 176 aa16.28■□□□□ 0.2
SHMT2-210ENST00000553950 CELF3Q5SZQ8 465 aaKnown RBP16.28■□□□□ 0.2
SHMT2-210ENST00000553950 TAPT1Q6NXT6 567 aa16.28■□□□□ 0.2
SHMT2-210ENST00000553950 CCDC62Q6P9F0 684 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 135.3 ms