RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 GJA10Q969M2 543 aa13.85□□□□□ -0.19
SHMT2-209ENST00000553949 FAM20AQ96MK3 541 aa13.85□□□□□ -0.19
SHMT2-209ENST00000553949 ZNF396Q96N95 335 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-209ENST00000553949 MTMR9Q96QG7 549 aa13.85□□□□□ -0.19
SHMT2-209ENST00000553949 FTOQ9C0B1 505 aaKnown RBP eCLIP13.85□□□□□ -0.19
SHMT2-209ENST00000553949 BCAS3Q9H6U6 928 aa13.85□□□□□ -0.19
SHMT2-209ENST00000553949 MLXIPQ9HAP2 919 aa13.85□□□□□ -0.19
SHMT2-209ENST00000553949 TBC1D22BQ9NU19 505 aa13.85□□□□□ -0.19
SHMT2-209ENST00000553949 CLIC4Q9Y696 253 aa13.85□□□□□ -0.19
SHMT2-209ENST00000553949 NFASCO94856 1347 aa13.85□□□□□ -0.19
SHMT2-209ENST00000553949 POTEFA5A3E0 1075 aa13.84□□□□□ -0.19
SHMT2-209ENST00000553949 GAS7O60861 476 aa13.84□□□□□ -0.19
SHMT2-209ENST00000553949 FARP2O94887 1054 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-209ENST00000553949 BAG4O95429 457 aaKnown RBP13.84□□□□□ -0.19
SHMT2-209ENST00000553949 OR52Z1P0C646 297 aa13.84□□□□□ -0.19
SHMT2-209ENST00000553949 PTGDRQ13258 359 aa13.84□□□□□ -0.19
SHMT2-209ENST00000553949 SF3A1Q15459 793 aaKnown RBP13.84□□□□□ -0.19
SHMT2-209ENST00000553949 LRCH2Q5VUJ6 765 aa13.84□□□□□ -0.19
SHMT2-209ENST00000553949 SLFN12Q8IYM2 578 aa13.84□□□□□ -0.19
SHMT2-209ENST00000553949 EMID1Q96A84 441 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-209ENST00000553949 DEFB118Q96PH6 123 aa13.84□□□□□ -0.19
SHMT2-209ENST00000553949 USP28Q96RU2 1077 aa13.84□□□□□ -0.19
SHMT2-209ENST00000553949 RIT2Q99578 217 aa13.84□□□□□ -0.19
SHMT2-209ENST00000553949 AP5M1Q9H0R1 490 aa13.84□□□□□ -0.19
SHMT2-209ENST00000553949 JPH1Q9HDC5 661 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-209ENST00000553949 XPNPEP3Q9NQH7 507 aa13.84□□□□□ -0.19
SHMT2-209ENST00000553949 CEP131Q9UPN4 1083 aa13.84□□□□□ -0.19
SHMT2-209ENST00000553949 ATP6V1DQ9Y5K8 247 aa13.84□□□□□ -0.19
SHMT2-209ENST00000553949 SYNRGQ9UMZ2 1314 aa13.84□□□□□ -0.19
SHMT2-209ENST00000553949 DDX39AO00148 427 aaKnown RBP13.83□□□□□ -0.2
SHMT2-209ENST00000553949 LAD1O00515 517 aa13.83□□□□□ -0.2
SHMT2-209ENST00000553949 PSMD10O75832 226 aa13.83□□□□□ -0.2
SHMT2-209ENST00000553949 BMP15O95972 392 aa13.83□□□□□ -0.2
SHMT2-209ENST00000553949 PGK1P00558 417 aa13.83□□□□□ -0.2
SHMT2-209ENST00000553949 TXKP42681 527 aa13.83□□□□□ -0.2
SHMT2-209ENST00000553949 GJA9P57773 515 aa13.83□□□□□ -0.2
SHMT2-209ENST00000553949 ATP2C1P98194 919 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-209ENST00000553949 CEBPZQ03701 1054 aaKnown RBP13.83□□□□□ -0.2
SHMT2-209ENST00000553949 DNM1Q05193 864 aaKnown RBP13.83□□□□□ -0.2
SHMT2-209ENST00000553949 ATL3Q6DD88 541 aa13.83□□□□□ -0.2
SHMT2-209ENST00000553949 SPATA33Q96N06 139 aa13.83□□□□□ -0.2
SHMT2-209ENST00000553949 TEKT3Q9BXF9 490 aa13.83□□□□□ -0.2
SHMT2-209ENST00000553949 UPF3AQ9H1J1 476 aaKnown RBP13.83□□□□□ -0.2
SHMT2-209ENST00000553949 POLR3EQ9NVU0 708 aa13.83□□□□□ -0.2
SHMT2-209ENST00000553949 TFIP11Q9UBB9 837 aaKnown RBP13.83□□□□□ -0.2
SHMT2-209ENST00000553949 SLC9A2Q9UBY0 812 aa13.83□□□□□ -0.2
SHMT2-209ENST00000553949 VAV3Q9UKW4 847 aa13.83□□□□□ -0.2
SHMT2-209ENST00000553949 CTAGE5O15320 804 aa13.82□□□□□ -0.2
SHMT2-209ENST00000553949 ADAMTS4O75173 837 aa13.82□□□□□ -0.2
SHMT2-209ENST00000553949 CCNE2O96020 404 aa13.82□□□□□ -0.2
SHMT2-209ENST00000553949 GJB1P08034 283 aa13.82□□□□□ -0.2
SHMT2-209ENST00000553949 C6orf222P0C671 652 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-209ENST00000553949 NASPP49321 788 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-209ENST00000553949 NKX3-2P78367 333 aa13.82□□□□□ -0.2
SHMT2-209ENST00000553949 SP4Q02446 784 aa13.82□□□□□ -0.2
SHMT2-209ENST00000553949 PTPAQ15257 358 aa13.82□□□□□ -0.2
SHMT2-209ENST00000553949 FSCN1Q16658 493 aaKnown RBP13.82□□□□□ -0.2
SHMT2-209ENST00000553949 HSDL1Q3SXM5 330 aa13.82□□□□□ -0.2
SHMT2-209ENST00000553949 PPTC7Q8NI37 304 aa13.82□□□□□ -0.2
SHMT2-209ENST00000553949 AFG1LQ8WV93 481 aa13.82□□□□□ -0.2
SHMT2-209ENST00000553949 TMEM106CQ9BVX2 250 aa13.82□□□□□ -0.2
SHMT2-209ENST00000553949 TTC12Q9H892 705 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-209ENST00000553949 SPC25Q9HBM1 224 aa13.82□□□□□ -0.2
SHMT2-209ENST00000553949 CFAP45Q9UL16 551 aa13.82□□□□□ -0.2
SHMT2-209ENST00000553949 PCDHA12Q9UN75 941 aa13.82□□□□□ -0.2
SHMT2-209ENST00000553949 TELO2Q9Y4R8 837 aa13.82□□□□□ -0.2
SHMT2-209ENST00000553949 BRCA2P51587 3418 aa13.81□□□□□ -0.2
SHMT2-209ENST00000553949 MYADML2A6NDP7 307 aa13.81□□□□□ -0.2
SHMT2-209ENST00000553949 A6NJR5 290 aa13.81□□□□□ -0.2
SHMT2-209ENST00000553949 NOP56O00567 594 aaKnown RBP13.81□□□□□ -0.2
SHMT2-209ENST00000553949 CHMP2AO43633 222 aa13.81□□□□□ -0.2
SHMT2-209ENST00000553949 SGPL1O95470 568 aa13.81□□□□□ -0.2
SHMT2-209ENST00000553949 PRPHP41219 470 aa13.81□□□□□ -0.2
SHMT2-209ENST00000553949 CPT1AP50416 773 aa13.81□□□□□ -0.2
SHMT2-209ENST00000553949 ACTR2P61160 394 aa13.81□□□□□ -0.2
SHMT2-209ENST00000553949 IRX5P78411 483 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-209ENST00000553949 KRT76Q01546 638 aa13.81□□□□□ -0.2
SHMT2-209ENST00000553949 PPP2R5CQ13362 524 aa13.81□□□□□ -0.2
SHMT2-209ENST00000553949 ZNF746Q6NUN9 644 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-209ENST00000553949 B3GNT9Q6UX72 402 aa13.81□□□□□ -0.2
SHMT2-209ENST00000553949 KLHDC9Q8NEP7 349 aa13.81□□□□□ -0.2
SHMT2-209ENST00000553949 U2AF1L4Q8WU68 220 aaKnown RBP13.81□□□□□ -0.2
SHMT2-209ENST00000553949 CHAMP1Q96JM3 812 aa13.81□□□□□ -0.2
SHMT2-209ENST00000553949 GPR20Q99678 358 aa13.81□□□□□ -0.2
SHMT2-209ENST00000553949 CRISPLD2Q9H0B8 497 aa13.81□□□□□ -0.2
SHMT2-209ENST00000553949 UNC45AQ9H3U1 944 aa13.81□□□□□ -0.2
SHMT2-209ENST00000553949 TCEAL9Q9UHQ7 104 aa13.81□□□□□ -0.2
SHMT2-209ENST00000553949 OGDHLQ9ULD0 1010 aa13.81□□□□□ -0.2
SHMT2-209ENST00000553949 KIAA1217Q5T5P2 1943 aa13.81□□□□□ -0.2
SHMT2-209ENST00000553949 GSTTP1A0A1W2PQM5 241 aa13.8□□□□□ -0.2
SHMT2-209ENST00000553949 YEATS4O95619 227 aa13.8□□□□□ -0.2
SHMT2-209ENST00000553949 MYCNP04198 464 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-209ENST00000553949 MMP3P08254 477 aa13.8□□□□□ -0.2
SHMT2-209ENST00000553949 TECP42680 631 aa13.8□□□□□ -0.2
SHMT2-209ENST00000553949 GJA8P48165 433 aa13.8□□□□□ -0.2
SHMT2-209ENST00000553949 KRT85P78386 507 aa13.8□□□□□ -0.2
SHMT2-209ENST00000553949 BEX3Q00994 111 aa13.8□□□□□ -0.2
SHMT2-209ENST00000553949 SPIRE1Q08AE8 756 aa13.8□□□□□ -0.2
SHMT2-209ENST00000553949 SLC39A14Q15043 492 aa13.8□□□□□ -0.2
SHMT2-209ENST00000553949 STK38Q15208 465 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms