RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 CAPN10Q9HC96 672 aa7.89□□□□□ -1.15
LIMA1-204ENST00000549064 FAM184BQ9ULE4 1060 aa7.89□□□□□ -1.15
LIMA1-204ENST00000549064 DIS3Q9Y2L1 958 aaKnown RBP7.89□□□□□ -1.15
LIMA1-204ENST00000549064 CACNA1AO00555 2505 aa7.89□□□□□ -1.15
LIMA1-204ENST00000549064 MPHOSPH10O00566 681 aaKnown RBP7.88□□□□□ -1.15
LIMA1-204ENST00000549064 OPLAHO14841 1288 aa7.88□□□□□ -1.15
LIMA1-204ENST00000549064 CTAGE5O15320 804 aa7.88□□□□□ -1.15
LIMA1-204ENST00000549064 DUSP11O75319 330 aaKnown RBP7.88□□□□□ -1.15
LIMA1-204ENST00000549064 SLC25A27O95847 323 aa7.88□□□□□ -1.15
LIMA1-204ENST00000549064 CYP2E1P05181 493 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-204ENST00000549064 CTSHP09668 335 aa7.88□□□□□ -1.15
LIMA1-204ENST00000549064 PTGS1P23219 599 aa7.88□□□□□ -1.15
LIMA1-204ENST00000549064 PLCD1P51178 756 aa7.88□□□□□ -1.15
LIMA1-204ENST00000549064 BEX3Q00994 111 aa7.88□□□□□ -1.15
LIMA1-204ENST00000549064 TAP1Q03518 808 aa7.88□□□□□ -1.15
LIMA1-204ENST00000549064 FOXC1Q12948 553 aa7.88□□□□□ -1.15
LIMA1-204ENST00000549064 KCTD2Q14681 263 aa7.88□□□□□ -1.15
LIMA1-204ENST00000549064 GNASQ5JWF2 1037 aa7.88□□□□□ -1.15
LIMA1-204ENST00000549064 FAM178BQ8IXR5 827 aa7.88□□□□□ -1.15
LIMA1-204ENST00000549064 PCSK9Q8NBP7 692 aaKnown RBP7.88□□□□□ -1.15
LIMA1-204ENST00000549064 TTC16Q8NEE8 873 aa7.88□□□□□ -1.15
LIMA1-204ENST00000549064 RHBDD1Q8TEB9 315 aa7.88□□□□□ -1.15
LIMA1-204ENST00000549064 SSH1Q8WYL5 1049 aa7.88□□□□□ -1.15
LIMA1-204ENST00000549064 NOC4LQ9BVI4 516 aaKnown RBP7.88□□□□□ -1.15
LIMA1-204ENST00000549064 TRPV6Q9H1D0 765 aa7.88□□□□□ -1.15
LIMA1-204ENST00000549064 EHD4Q9H223 541 aa7.88□□□□□ -1.15
LIMA1-204ENST00000549064 PIH1D3Q9NQM4 214 aaKnown RBP7.88□□□□□ -1.15
LIMA1-204ENST00000549064 FBXO28Q9NVF7 368 aa7.88□□□□□ -1.15
LIMA1-204ENST00000549064 MICAL2O94851 1124 aa7.87□□□□□ -1.15
LIMA1-204ENST00000549064 UQCRFS1P1P0C7P4 283 aa7.87□□□□□ -1.15
LIMA1-204ENST00000549064 CYP7A1P22680 504 aa7.87□□□□□ -1.15
LIMA1-204ENST00000549064 WDR4P57081 412 aaKnown RBP7.87□□□□□ -1.15
LIMA1-204ENST00000549064 GJA9P57773 515 aa7.87□□□□□ -1.15
LIMA1-204ENST00000549064 CCDC144BQ3MJ40 725 aa7.87□□□□□ -1.15
LIMA1-204ENST00000549064 CXCL17Q6UXB2 119 aa7.87□□□□□ -1.15
LIMA1-204ENST00000549064 DEFB128Q7Z7B8 93 aa7.87□□□□□ -1.15
LIMA1-204ENST00000549064 RIOX2Q8IUF8 465 aa7.87□□□□□ -1.15
LIMA1-204ENST00000549064 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-204ENST00000549064 RHPN1Q8TCX5 695 aa7.87□□□□□ -1.15
LIMA1-204ENST00000549064 FBF1Q8TES7 1133 aa7.87□□□□□ -1.15
LIMA1-204ENST00000549064 GDPD5Q8WTR4 605 aa7.87□□□□□ -1.15
LIMA1-204ENST00000549064 CRELD1Q96HD1 420 aa7.87□□□□□ -1.15
LIMA1-204ENST00000549064 KLF16Q9BXK1 252 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-204ENST00000549064 UPF3AQ9H1J1 476 aaKnown RBP7.87□□□□□ -1.15
LIMA1-204ENST00000549064 AK5Q9Y6K8 562 aa7.87□□□□□ -1.15
LIMA1-204ENST00000549064 TET1Q8NFU7 2136 aa7.87□□□□□ -1.15
LIMA1-204ENST00000549064 GRIN2DO15399 1336 aa7.86□□□□□ -1.15
LIMA1-204ENST00000549064 TANC1Q9C0D5 1861 aa7.86□□□□□ -1.15
LIMA1-204ENST00000549064 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-204ENST00000549064 RBAK-RBAKDNI3L0D1 243 aa7.86□□□□□ -1.15
LIMA1-204ENST00000549064 SMARCA5O60264 1052 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-204ENST00000549064 B4GALT4O60513 344 aa7.86□□□□□ -1.15
LIMA1-204ENST00000549064 ALADP13716 330 aa7.86□□□□□ -1.15
LIMA1-204ENST00000549064 STAT3P40763 770 aa7.86□□□□□ -1.15
LIMA1-204ENST00000549064 PSMC6P62333 389 aa7.86□□□□□ -1.15
LIMA1-204ENST00000549064 ACVR2BQ13705 512 aa7.86□□□□□ -1.15
LIMA1-204ENST00000549064 C4orf17Q53FE4 359 aa7.86□□□□□ -1.15
LIMA1-204ENST00000549064 HFE2Q6ZVN8 426 aa7.86□□□□□ -1.15
LIMA1-204ENST00000549064 TTC6Q86TZ1 520 aa7.86□□□□□ -1.15
LIMA1-204ENST00000549064 SIAH1Q8IUQ4 282 aa7.86□□□□□ -1.15
LIMA1-204ENST00000549064 RPUSD2Q8IZ73 545 aaKnown RBP7.86□□□□□ -1.15
LIMA1-204ENST00000549064 SLC43A3Q8NBI5 491 aa7.86□□□□□ -1.15
LIMA1-204ENST00000549064 MEIS3Q99687 375 aa7.86□□□□□ -1.15
LIMA1-204ENST00000549064 UBE2ZQ9H832 354 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-204ENST00000549064 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-204ENST00000549064 USP20Q9Y2K6 914 aa7.86□□□□□ -1.15
LIMA1-204ENST00000549064 ZDBF2Q9HCK1 2354 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 SIP14410 1827 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 ASTN1O14525 1302 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 SRGAP3O43295 1099 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 DCXO43602 365 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 CPNE3O75131 537 aaKnown RBP7.85□□□□□ -1.15
LIMA1-204ENST00000549064 KCNA5P22460 613 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 EIF4BP23588 611 aaKnown RBP7.85□□□□□ -1.15
LIMA1-204ENST00000549064 GABPAQ06546 454 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 ITGA7Q13683 1181 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 LEXMQ3ZCV2 418 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.85□□□□□ -1.15
LIMA1-204ENST00000549064 TTC39AQ5SRH9 613 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 MAMDC4Q6UXC1 1216 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 PRSS33Q8NF86 280 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 REPS2Q8NFH8 660 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 RNF166Q96A37 237 aaPredicted RBP7.85□□□□□ -1.15
LIMA1-204ENST00000549064 HSH2DQ96JZ2 352 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 FGD4Q96M96 766 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 DNAJC2Q99543 621 aaKnown RBP7.85□□□□□ -1.15
LIMA1-204ENST00000549064 DBNDD2Q9BQY9 259 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 KCNH6Q9H252 994 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 VCPKMTQ9H867 229 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 SPC25Q9HBM1 224 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 FOXD3Q9UJU5 478 aaPredicted RBP7.85□□□□□ -1.15
LIMA1-204ENST00000549064 ZNF214Q9UL59 606 aaPredicted RBP7.85□□□□□ -1.15
LIMA1-204ENST00000549064 ADAMTS5Q9UNA0 930 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 RIPK3Q9Y572 518 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 PCDHGB7Q9Y5F8 929 aa7.85□□□□□ -1.15
LIMA1-204ENST00000549064 BAZ2AQ9UIF9 1905 aaKnown RBP7.84□□□□□ -1.15
LIMA1-204ENST00000549064 DNAJC25-GNG10A0A024R161 153 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-204ENST00000549064 LCHNA4D1U4 455 aa7.84□□□□□ -1.15
LIMA1-204ENST00000549064 TGFBR3LH3BV60 316 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms