RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 SMAD4Q13485 552 aaKnown RBP5.89□□□□□ -1.47
VPS29-205ENST00000548539 SLC9A5Q14940 896 aa5.89□□□□□ -1.47
VPS29-205ENST00000548539 PTPROQ16827 1216 aa5.89□□□□□ -1.47
VPS29-205ENST00000548539 PRSS53Q2L4Q9 553 aa5.89□□□□□ -1.47
VPS29-205ENST00000548539 DALRD3Q5D0E6 543 aaKnown RBP5.89□□□□□ -1.47
VPS29-205ENST00000548539 ZC3H12BQ5HYM0 836 aaKnown RBP5.89□□□□□ -1.47
VPS29-205ENST00000548539 LIMS2Q7Z4I7 341 aa5.89□□□□□ -1.47
VPS29-205ENST00000548539 SCUBE1Q8IWY4 988 aa5.89□□□□□ -1.47
VPS29-205ENST00000548539 SSBP3Q9BWW4 388 aaPredicted RBP5.89□□□□□ -1.47
VPS29-205ENST00000548539 NCOA5Q9HCD5 579 aaKnown RBP5.89□□□□□ -1.47
VPS29-205ENST00000548539 SF3B6Q9Y3B4 125 aaKnown RBP5.89□□□□□ -1.47
VPS29-205ENST00000548539 STXBP3O00186 592 aa5.88□□□□□ -1.47
VPS29-205ENST00000548539 DLX3O60479 287 aa5.88□□□□□ -1.47
VPS29-205ENST00000548539 CAPNS1P04632 268 aa5.88□□□□□ -1.47
VPS29-205ENST00000548539 CD3EP07766 207 aa5.88□□□□□ -1.47
VPS29-205ENST00000548539 SUMO1P63165 101 aaKnown RBP5.88□□□□□ -1.47
VPS29-205ENST00000548539 AMPD2Q01433 879 aa5.88□□□□□ -1.47
VPS29-205ENST00000548539 PABPC4Q13310 644 aaKnown RBP eCLIP5.88□□□□□ -1.47
VPS29-205ENST00000548539 LINC00482Q8N8I6 264 aa5.88□□□□□ -1.47
VPS29-205ENST00000548539 DDX11Q96FC9 970 aa5.88□□□□□ -1.47
VPS29-205ENST00000548539 PTCHD1Q96NR3 888 aa5.88□□□□□ -1.47
VPS29-205ENST00000548539 CLUHP3Q96NS8 147 aa5.88□□□□□ -1.47
VPS29-205ENST00000548539 MCMBPQ9BTE3 642 aa5.88□□□□□ -1.47
VPS29-205ENST00000548539 ZNF747Q9BV97 191 aa5.88□□□□□ -1.47
VPS29-205ENST00000548539 VPS11Q9H270 941 aa5.88□□□□□ -1.47
VPS29-205ENST00000548539 NKX2-4Q9H2Z4 354 aa5.88□□□□□ -1.47
VPS29-205ENST00000548539 SPC25Q9HBM1 224 aa5.88□□□□□ -1.47
VPS29-205ENST00000548539 NUDT5Q9UKK9 219 aa5.88□□□□□ -1.47
VPS29-205ENST00000548539 CCDC163A0A0D9SF12 145 aa5.87□□□□□ -1.47
VPS29-205ENST00000548539 MROH6A6NGR9 719 aa5.87□□□□□ -1.47
VPS29-205ENST00000548539 MASP1P48740 699 aa5.87□□□□□ -1.47
VPS29-205ENST00000548539 GFRA1P56159 465 aa5.87□□□□□ -1.47
VPS29-205ENST00000548539 SCRN1Q12765 414 aa5.87□□□□□ -1.47
VPS29-205ENST00000548539 GRB10Q13322 594 aa5.87□□□□□ -1.47
VPS29-205ENST00000548539 TAF7LQ5H9L4 462 aa5.87□□□□□ -1.47
VPS29-205ENST00000548539 NIM1KQ8IY84 436 aa5.87□□□□□ -1.47
VPS29-205ENST00000548539 ANKRD13AQ8IZ07 590 aa5.87□□□□□ -1.47
VPS29-205ENST00000548539 SYNPOQ8N3V7 929 aa5.87□□□□□ -1.47
VPS29-205ENST00000548539 TMEM145Q8NBT3 493 aa5.87□□□□□ -1.47
VPS29-205ENST00000548539 PEX11GQ96HA9 241 aa5.87□□□□□ -1.47
VPS29-205ENST00000548539 CDK5RAP1Q96SZ6 601 aaKnown RBP5.87□□□□□ -1.47
VPS29-205ENST00000548539 NDOR1Q9UHB4 597 aa5.87□□□□□ -1.47
VPS29-205ENST00000548539 PRKAB1Q9Y478 270 aa5.87□□□□□ -1.47
VPS29-205ENST00000548539 PLD2O14939 933 aa5.86□□□□□ -1.47
VPS29-205ENST00000548539 HMGB1P09429 215 aaKnown RBP5.86□□□□□ -1.47
VPS29-205ENST00000548539 IFNGR1P15260 489 aa5.86□□□□□ -1.47
VPS29-205ENST00000548539 POU4F1Q01851 419 aa5.86□□□□□ -1.47
VPS29-205ENST00000548539 CDSNQ15517 529 aa5.86□□□□□ -1.47
VPS29-205ENST00000548539 FAM26FQ5R3K3 315 aa5.86□□□□□ -1.47
VPS29-205ENST00000548539 USP53Q70EK8 1073 aa5.86□□□□□ -1.47
VPS29-205ENST00000548539 KCTD13Q8WZ19 329 aa5.86□□□□□ -1.47
VPS29-205ENST00000548539 NINJ1Q92982 152 aa5.86□□□□□ -1.47
VPS29-205ENST00000548539 FCRL3Q96P31 734 aaPredicted RBP5.86□□□□□ -1.47
VPS29-205ENST00000548539 PCED1AQ9H1Q7 454 aa5.86□□□□□ -1.47
VPS29-205ENST00000548539 COL4A3BPQ9Y5P4 624 aa5.86□□□□□ -1.47
VPS29-205ENST00000548539 hCG_2014768A0A024R1R8 64 aa5.85□□□□□ -1.47
VPS29-205ENST00000548539 ZBTB7AO95365 584 aa5.85□□□□□ -1.47
VPS29-205ENST00000548539 AMHP03971 560 aa5.85□□□□□ -1.47
VPS29-205ENST00000548539 C6orf222P0C671 652 aaPredicted RBP5.85□□□□□ -1.47
VPS29-205ENST00000548539 CYP2C8P10632 490 aa5.85□□□□□ -1.47
VPS29-205ENST00000548539 RPL13P26373 211 aaKnown RBP5.85□□□□□ -1.47
VPS29-205ENST00000548539 HOXC12P31275 282 aa5.85□□□□□ -1.47
VPS29-205ENST00000548539 CYP4F3Q08477 520 aa5.85□□□□□ -1.47
VPS29-205ENST00000548539 NTRK3Q16288 839 aa5.85□□□□□ -1.47
VPS29-205ENST00000548539 MFSD3Q96ES6 412 aa5.85□□□□□ -1.47
VPS29-205ENST00000548539 GPRC5CQ9NQ84 441 aa5.85□□□□□ -1.47
VPS29-205ENST00000548539 CYP26B1Q9NR63 512 aa5.85□□□□□ -1.47
VPS29-205ENST00000548539 SFMBT1Q9UHJ3 866 aa5.85□□□□□ -1.47
VPS29-205ENST00000548539 PLAAQ9Y263 795 aa5.85□□□□□ -1.47
VPS29-205ENST00000548539 THBDP07204 575 aa5.84□□□□□ -1.47
VPS29-205ENST00000548539 MYCLP1P12525 358 aaPredicted RBP5.84□□□□□ -1.47
VPS29-205ENST00000548539 SDSP20132 328 aa5.84□□□□□ -1.47
VPS29-205ENST00000548539 IBSPP21815 317 aaPredicted RBP5.84□□□□□ -1.47
VPS29-205ENST00000548539 MAP4K2Q12851 820 aa5.84□□□□□ -1.47
VPS29-205ENST00000548539 SURF1Q15526 300 aa5.84□□□□□ -1.47
VPS29-205ENST00000548539 FNDC3BQ53EP0 1204 aaKnown RBP5.84□□□□□ -1.47
VPS29-205ENST00000548539 TM4SF20Q53R12 229 aa5.84□□□□□ -1.47
VPS29-205ENST00000548539 MCTP2Q6DN12 878 aa5.84□□□□□ -1.47
VPS29-205ENST00000548539 DENND5AQ6IQ26 1287 aa5.84□□□□□ -1.47
VPS29-205ENST00000548539 CNNM4Q6P4Q7 775 aa5.84□□□□□ -1.47
VPS29-205ENST00000548539 LZTR1Q8N653 840 aa5.84□□□□□ -1.47
VPS29-205ENST00000548539 NETO2Q8NC67 525 aa5.84□□□□□ -1.47
VPS29-205ENST00000548539 SLC7A14Q8TBB6 771 aa5.84□□□□□ -1.47
VPS29-205ENST00000548539 GORASP1Q9BQQ3 440 aa5.84□□□□□ -1.47
VPS29-205ENST00000548539 MRPL4Q9BYD3 311 aaKnown RBP5.84□□□□□ -1.47
VPS29-205ENST00000548539 KLC2Q9H0B6 622 aa5.84□□□□□ -1.47
VPS29-205ENST00000548539 SLC52A2Q9HAB3 445 aa5.84□□□□□ -1.47
VPS29-205ENST00000548539 PCDH18Q9HCL0 1135 aa5.84□□□□□ -1.47
VPS29-205ENST00000548539 PCDH12Q9NPG4 1184 aa5.84□□□□□ -1.47
VPS29-205ENST00000548539 TRAF6Q9Y4K3 522 aa5.84□□□□□ -1.47
VPS29-205ENST00000548539 BACE2Q9Y5Z0 518 aa5.84□□□□□ -1.47
VPS29-205ENST00000548539 HS3ST3A1Q9Y663 406 aa5.84□□□□□ -1.47
VPS29-205ENST00000548539 C2orf71A6NGG8 1288 aa5.83□□□□□ -1.48
VPS29-205ENST00000548539 AURKAO14965 403 aa5.83□□□□□ -1.48
VPS29-205ENST00000548539 CNGA1P29973 690 aa5.83□□□□□ -1.48
VPS29-205ENST00000548539 THBS2P35442 1172 aa5.83□□□□□ -1.48
VPS29-205ENST00000548539 IGBP1P78318 339 aa5.83□□□□□ -1.48
VPS29-205ENST00000548539 ICAM4Q14773 271 aa5.83□□□□□ -1.48
VPS29-205ENST00000548539 SLC35F1Q5T1Q4 408 aa5.83□□□□□ -1.48
VPS29-205ENST00000548539 KCNT2Q6UVM3 1135 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms