RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 SLC26A6Q9BXS9 759 aa9.68□□□□□ -0.86
VPS29-203ENST00000546588 CUEDC1Q9NWM3 386 aaPredicted RBP9.68□□□□□ -0.86
VPS29-203ENST00000546588 GGA3Q9NZ52 723 aa9.68□□□□□ -0.86
VPS29-203ENST00000546588 LCTP09848 1927 aa9.68□□□□□ -0.86
VPS29-203ENST00000546588 A0A1W2PRG0 241 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 VPS37CA5D8V6 355 aaPredicted RBP9.67□□□□□ -0.86
VPS29-203ENST00000546588 IQCA1LA6NCM1 817 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 KLRF2D3W0D1 207 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 GOLGA6L22H0YM25 854 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 H3BQV1 296 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 TNFRSF10BO14763 440 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 TREHO43280 583 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 FZD6O60353 706 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 GH2P01242 217 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 XBP1P17861 261 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 PTGIRP43119 386 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 NASPP49321 788 aaPredicted RBP9.67□□□□□ -0.86
VPS29-203ENST00000546588 MTFR1Q15390 333 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 SHROOM1Q2M3G4 852 aaPredicted RBP9.67□□□□□ -0.86
VPS29-203ENST00000546588 KLHL40Q2TBA0 621 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 RAB11FIP4Q86YS3 637 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.67□□□□□ -0.86
VPS29-203ENST00000546588 KLRG1Q96E93 195 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 C12orf42Q96LP6 360 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 AIFM3Q96NN9 605 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 WDR18Q9BV38 432 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 ZNF341Q9BYN7 854 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 SCAND2PQ9GZW5 306 aaPredicted RBP9.67□□□□□ -0.86
VPS29-203ENST00000546588 ZMYND12Q9H0C1 365 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 SH2D4AQ9H788 454 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 CABP5Q9NP86 173 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 BARHL2Q9NY43 387 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 CLIP2Q9UDT6 1046 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 LRFN2Q9ULH4 789 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 HCN4Q9Y3Q4 1203 aa9.67□□□□□ -0.86
VPS29-203ENST00000546588 LRRC37A2A6NM11 1700 aa9.66□□□□□ -0.86
VPS29-203ENST00000546588 SERTM1A2A2V5 107 aa9.66□□□□□ -0.86
VPS29-203ENST00000546588 KIF28PB7ZC32 967 aa9.66□□□□□ -0.86
VPS29-203ENST00000546588 UBE2Q2LH0YL09 131 aa9.66□□□□□ -0.86
VPS29-203ENST00000546588 STXBP3O00186 592 aa9.66□□□□□ -0.86
VPS29-203ENST00000546588 YEATS4O95619 227 aa9.66□□□□□ -0.86
VPS29-203ENST00000546588 KRT85P78386 507 aa9.66□□□□□ -0.86
VPS29-203ENST00000546588 SKOR2Q2VWA4 1001 aaPredicted RBP9.66□□□□□ -0.86
VPS29-203ENST00000546588 PNMA8AQ86V59 439 aaPredicted RBP9.66□□□□□ -0.86
VPS29-203ENST00000546588 CLEC10AQ8IUN9 316 aa9.66□□□□□ -0.86
VPS29-203ENST00000546588 NOSTRINQ8IVI9 506 aa9.66□□□□□ -0.86
VPS29-203ENST00000546588 SCYL3Q8IZE3 742 aa9.66□□□□□ -0.86
VPS29-203ENST00000546588 CCDC148Q8NFR7 591 aa9.66□□□□□ -0.86
VPS29-203ENST00000546588 LPAR1Q92633 364 aa9.66□□□□□ -0.86
VPS29-203ENST00000546588 KIAA1683Q9H0B3 1180 aa9.66□□□□□ -0.86
VPS29-203ENST00000546588 VCPKMTQ9H867 229 aa9.66□□□□□ -0.86
VPS29-203ENST00000546588 RTEL1Q9NZ71 1219 aa9.66□□□□□ -0.86
VPS29-203ENST00000546588 CFAP45Q9UL16 551 aa9.66□□□□□ -0.86
VPS29-203ENST00000546588 SRCAPQ6ZRS2 3230 aa9.65□□□□□ -0.86
VPS29-203ENST00000546588 LOXHD1Q8IVV2 1947 aa9.65□□□□□ -0.86
VPS29-203ENST00000546588 F5H6K3 240 aa9.65□□□□□ -0.86
VPS29-203ENST00000546588 MEN1O00255 615 aa9.65□□□□□ -0.86
VPS29-203ENST00000546588 CDK2AP1O14519 115 aa9.65□□□□□ -0.86
VPS29-203ENST00000546588 NDUFB10O96000 172 aa9.65□□□□□ -0.86
VPS29-203ENST00000546588 CALML3P27482 149 aa9.65□□□□□ -0.86
VPS29-203ENST00000546588 EPHX2P34913 555 aa9.65□□□□□ -0.86
VPS29-203ENST00000546588 GHRHRQ02643 423 aa9.65□□□□□ -0.86
VPS29-203ENST00000546588 KLRC3Q07444 240 aa9.65□□□□□ -0.86
VPS29-203ENST00000546588 GPR162Q16538 588 aa9.65□□□□□ -0.86
VPS29-203ENST00000546588 SUPT20HL1Q3ZLR7 823 aa9.65□□□□□ -0.86
VPS29-203ENST00000546588 NBPF12Q5TAG4 269 aaPredicted RBP9.65□□□□□ -0.86
VPS29-203ENST00000546588 SH3PXD2AQ5TCZ1 1133 aa9.65□□□□□ -0.86
VPS29-203ENST00000546588 RASGRP2Q7LDG7 609 aa9.65□□□□□ -0.86
VPS29-203ENST00000546588 CMTR1Q8N1G2 835 aaKnown RBP9.65□□□□□ -0.86
VPS29-203ENST00000546588 LRRC47Q8N1G4 583 aaKnown RBP9.65□□□□□ -0.86
VPS29-203ENST00000546588 CCDC12Q8WUD4 166 aaPredicted RBP9.65□□□□□ -0.86
VPS29-203ENST00000546588 SCARF2Q96GP6 870 aaPredicted RBP9.65□□□□□ -0.86
VPS29-203ENST00000546588 FAM161BQ96MY7 647 aa9.65□□□□□ -0.86
VPS29-203ENST00000546588 CITED4Q96RK1 184 aa9.65□□□□□ -0.86
VPS29-203ENST00000546588 TAF1DQ9H5J8 278 aaPredicted RBP9.65□□□□□ -0.86
VPS29-203ENST00000546588 RCOR1Q9UKL0 485 aa9.65□□□□□ -0.86
VPS29-203ENST00000546588 PNMA6FA0A0J9YX94 578 aa9.64□□□□□ -0.87
VPS29-203ENST00000546588 MPHOSPH10O00566 681 aaKnown RBP9.64□□□□□ -0.87
VPS29-203ENST00000546588 ZBTB39O15060 712 aa9.64□□□□□ -0.87
VPS29-203ENST00000546588 ZBTB5O15062 677 aa9.64□□□□□ -0.87
VPS29-203ENST00000546588 MBD3O95983 291 aa9.64□□□□□ -0.87
VPS29-203ENST00000546588 CELA2BP08218 269 aaPredicted RBP9.64□□□□□ -0.87
VPS29-203ENST00000546588 TRAPPC10P48553 1259 aa9.64□□□□□ -0.87
VPS29-203ENST00000546588 AKAP17AQ02040 695 aaKnown RBP9.64□□□□□ -0.87
VPS29-203ENST00000546588 DNM1Q05193 864 aaKnown RBP9.64□□□□□ -0.87
VPS29-203ENST00000546588 FMR1Q06787 632 aaKnown RBP eCLIP9.64□□□□□ -0.87
VPS29-203ENST00000546588 EHHADHQ08426 723 aa9.64□□□□□ -0.87
VPS29-203ENST00000546588 TRIM29Q14134 588 aa9.64□□□□□ -0.87
VPS29-203ENST00000546588 RILPL1Q5EBL4 403 aa9.64□□□□□ -0.87
VPS29-203ENST00000546588 SLFN13Q68D06 897 aa9.64□□□□□ -0.87
VPS29-203ENST00000546588 WWC2Q6AWC2 1192 aa9.64□□□□□ -0.87
VPS29-203ENST00000546588 DIS3L2Q8IYB7 885 aaKnown RBP9.64□□□□□ -0.87
VPS29-203ENST00000546588 DMRTB1Q96MA1 342 aa9.64□□□□□ -0.87
VPS29-203ENST00000546588 MAF1Q9H063 256 aa9.64□□□□□ -0.87
VPS29-203ENST00000546588 JMJD4Q9H9V9 463 aa9.64□□□□□ -0.87
VPS29-203ENST00000546588 GJB4Q9NTQ9 266 aa9.64□□□□□ -0.87
VPS29-203ENST00000546588 WDR81Q562E7 1941 aa9.64□□□□□ -0.87
VPS29-203ENST00000546588 FAM237AA0A1B0GTK4 181 aa9.63□□□□□ -0.87
VPS29-203ENST00000546588 WDR46O15213 610 aaKnown RBP9.63□□□□□ -0.87
VPS29-203ENST00000546588 DTNBO60941 627 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms