RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 HSPH1Q92598 858 aa16.68■□□□□ 0.26
CHD4-210ENST00000544040 OSTNP61366 133 aa16.68■□□□□ 0.26
CHD4-210ENST00000544040 TCIRG1Q13488 830 aa16.68■□□□□ 0.26
CHD4-210ENST00000544040 KCTD1Q719H9 257 aa16.68■□□□□ 0.26
CHD4-210ENST00000544040 NUDCD1Q96RS6 583 aa16.68■□□□□ 0.26
CHD4-210ENST00000544040 ZNF577Q9BSK1 485 aa16.68■□□□□ 0.26
CHD4-210ENST00000544040 ZWILCHQ9H900 591 aa16.68■□□□□ 0.26
CHD4-210ENST00000544040 NRBP2Q9NSY0 501 aa16.68■□□□□ 0.26
CHD4-210ENST00000544040 TRPC5Q9UL62 973 aaPredicted RBP16.68■□□□□ 0.26
CHD4-210ENST00000544040 PCDHA1Q9Y5I3 950 aa16.68■□□□□ 0.26
CHD4-210ENST00000544040 CDC25AP30304 524 aa16.68■□□□□ 0.26
CHD4-210ENST00000544040 KIAA0825Q8IV33 1275 aa16.68■□□□□ 0.26
CHD4-210ENST00000544040 NXF1Q9UBU9 619 aaKnown RBP16.68■□□□□ 0.26
CHD4-210ENST00000544040 CSADQ9Y600 493 aa16.68■□□□□ 0.26
CHD4-210ENST00000544040 PI4K2BG5E9Z4 385 aa16.68■□□□□ 0.26
CHD4-210ENST00000544040 TTI1O43156 1089 aa16.68■□□□□ 0.26
CHD4-210ENST00000544040 DNAJC24Q6P3W2 148 aa16.68■□□□□ 0.26
CHD4-210ENST00000544040 TBC1D22AQ8WUA7 517 aa16.68■□□□□ 0.26
CHD4-210ENST00000544040 NCLNQ969V3 563 aa16.68■□□□□ 0.26
CHD4-210ENST00000544040 SERPINI1Q99574 410 aa16.68■□□□□ 0.26
CHD4-210ENST00000544040 YIPF3Q9GZM5 350 aa16.68■□□□□ 0.26
CHD4-210ENST00000544040 HNRNPH2P55795 449 aaKnown RBP16.67■□□□□ 0.26
CHD4-210ENST00000544040 SLFN13Q68D06 897 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 SCARA5Q6ZMJ2 495 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 SNX25Q9H3E2 840 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 KMT5AQ9NQR1 393 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 RGS12O14924 1447 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 MCF2P10911 925 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 KRT27Q7Z3Y8 459 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 MCF2L2Q86YR7 1114 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 HACD3Q9P035 362 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 PLAAQ9Y263 795 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 DAB2P98082 770 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 ZNF658Q5TYW1 1059 aaPredicted RBP16.67■□□□□ 0.26
CHD4-210ENST00000544040 NEK9Q8TD19 979 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 TTC17Q96AE7 1141 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 TUBB6Q9BUF5 446 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 MAPK13O15264 365 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 SPAG7O75391 227 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 CA4P22748 312 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 CYP27A1Q02318 531 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 FMO2Q99518 471 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 CARMIL3Q8ND23 1372 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 UHRF1BP1LA0JNW5 1464 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 hCG_2014768A0A024R1R8 64 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 TFAMQ00059 246 aaKnown RBP16.67■□□□□ 0.26
CHD4-210ENST00000544040 OR6B2Q6IFH4 312 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 BBS5Q8N3I7 341 aa16.67■□□□□ 0.26
CHD4-210ENST00000544040 ARL4AP40617 200 aa16.66■□□□□ 0.26
CHD4-210ENST00000544040 FAM160B1Q5W0V3 765 aa16.66■□□□□ 0.26
CHD4-210ENST00000544040 TRIM11Q96F44 468 aa16.66■□□□□ 0.26
CHD4-210ENST00000544040 PCDHA4Q9UN74 947 aa16.66■□□□□ 0.26
CHD4-210ENST00000544040 M0R2C6 588 aa16.66■□□□□ 0.26
CHD4-210ENST00000544040 PTPREP23469 700 aa16.66■□□□□ 0.26
CHD4-210ENST00000544040 GLE1Q53GS7 698 aaKnown RBP16.66■□□□□ 0.26
CHD4-210ENST00000544040 SUPT20HQ8NEM7 779 aa16.66■□□□□ 0.26
CHD4-210ENST00000544040 RAPGEF5Q92565 580 aa16.66■□□□□ 0.26
CHD4-210ENST00000544040 PBKQ96KB5 322 aa16.66■□□□□ 0.26
CHD4-210ENST00000544040 WARS2Q9UGM6 360 aaKnown RBP16.66■□□□□ 0.26
CHD4-210ENST00000544040 NSUN2Q08J23 767 aaKnown RBP eCLIP16.66■□□□□ 0.26
CHD4-210ENST00000544040 CDO1Q16878 200 aa16.66■□□□□ 0.26
CHD4-210ENST00000544040 GALNT17Q6IS24 598 aa16.66■□□□□ 0.26
CHD4-210ENST00000544040 SULF1Q8IWU6 871 aa16.66■□□□□ 0.26
CHD4-210ENST00000544040 ZNF496Q96IT1 587 aaPredicted RBP16.66■□□□□ 0.26
CHD4-210ENST00000544040 GSDMAQ96QA5 445 aa16.66■□□□□ 0.26
CHD4-210ENST00000544040 PPP6R2O75170 966 aa16.66■□□□□ 0.26
CHD4-210ENST00000544040 MAN2A1Q16706 1144 aa16.66■□□□□ 0.26
CHD4-210ENST00000544040 RGS9BPQ6ZS82 235 aa16.66■□□□□ 0.26
CHD4-210ENST00000544040 TRPV6Q9H1D0 765 aa16.66■□□□□ 0.26
CHD4-210ENST00000544040 KCNQ3O43525 872 aa16.66■□□□□ 0.26
CHD4-210ENST00000544040 DDIT3P35638 169 aa16.66■□□□□ 0.26
CHD4-210ENST00000544040 EIF4A1P60842 406 aaKnown RBP16.66■□□□□ 0.26
CHD4-210ENST00000544040 DHTKD1Q96HY7 919 aaPredicted RBP16.66■□□□□ 0.26
CHD4-210ENST00000544040 CCDC195A0A1B0GUA6 201 aa16.65■□□□□ 0.26
CHD4-210ENST00000544040 BNIP3LO60238 219 aa16.65■□□□□ 0.26
CHD4-210ENST00000544040 HSPA4LO95757 839 aa16.65■□□□□ 0.26
CHD4-210ENST00000544040 SLC16A2P36021 539 aa16.65■□□□□ 0.26
CHD4-210ENST00000544040 PYROXD1Q8WU10 500 aa16.65■□□□□ 0.26
CHD4-210ENST00000544040 ACCSQ96QU6 501 aa16.65■□□□□ 0.26
CHD4-210ENST00000544040 HMGB1P1B2RPK0 211 aaPredicted RBP16.65■□□□□ 0.26
CHD4-210ENST00000544040 INO80B-WBP1J3KQ70 363 aa16.65■□□□□ 0.26
CHD4-210ENST00000544040 HOXB7P09629 217 aa16.65■□□□□ 0.26
CHD4-210ENST00000544040 KRT26Q7Z3Y9 468 aa16.65■□□□□ 0.26
CHD4-210ENST00000544040 SZRD1Q7Z422 152 aa16.65■□□□□ 0.26
CHD4-210ENST00000544040 TTC30BQ8N4P2 665 aa16.65■□□□□ 0.26
CHD4-210ENST00000544040 SYT2Q8N9I0 419 aaPredicted RBP16.65■□□□□ 0.26
CHD4-210ENST00000544040 INO80BQ9C086 356 aaPredicted RBP16.65■□□□□ 0.26
CHD4-210ENST00000544040 SYNDIG1LA6NDD5 238 aa16.65■□□□□ 0.26
CHD4-210ENST00000544040 RPS8P62241 208 aaKnown RBP16.65■□□□□ 0.26
CHD4-210ENST00000544040 SLC39A14Q15043 492 aa16.65■□□□□ 0.26
CHD4-210ENST00000544040 STK17AQ9UEE5 414 aa16.65■□□□□ 0.26
CHD4-210ENST00000544040 DNAJC6O75061 913 aa16.65■□□□□ 0.26
CHD4-210ENST00000544040 PDCLQ13371 301 aa16.65■□□□□ 0.26
CHD4-210ENST00000544040 FAM98CQ17RN3 349 aaKnown RBP16.65■□□□□ 0.26
CHD4-210ENST00000544040 UPF3AQ9H1J1 476 aaKnown RBP16.65■□□□□ 0.26
CHD4-210ENST00000544040 UBN2Q6ZU65 1347 aa16.65■□□□□ 0.26
CHD4-210ENST00000544040 FMNL1O95466 1100 aaPredicted RBP16.65■□□□□ 0.26
CHD4-210ENST00000544040 FBXO38Q6PIJ6 1188 aa16.65■□□□□ 0.26
CHD4-210ENST00000544040 GSPT2Q8IYD1 628 aaKnown RBP16.65■□□□□ 0.26
CHD4-210ENST00000544040 PPARGC1AQ9UBK2 798 aaKnown RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms