RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 MTMR1Q13613 665 aa14.15□□□□□ -0.14
VPS33A-207ENST00000542790 NEDD9Q14511 834 aa14.15□□□□□ -0.14
VPS33A-207ENST00000542790 CEP55Q53EZ4 464 aa14.15□□□□□ -0.14
VPS33A-207ENST00000542790 CELF3Q5SZQ8 465 aaKnown RBP14.15□□□□□ -0.14
VPS33A-207ENST00000542790 C1orf53Q5VUE5 145 aa14.15□□□□□ -0.14
VPS33A-207ENST00000542790 BLIDQ8IZY5 108 aa14.15□□□□□ -0.14
VPS33A-207ENST00000542790 GIMAP8Q8ND71 665 aaPredicted RBP14.15□□□□□ -0.14
VPS33A-207ENST00000542790 VTI1AQ96AJ9 217 aa14.15□□□□□ -0.14
VPS33A-207ENST00000542790 SENP7Q9BQF6 1050 aa14.15□□□□□ -0.14
VPS33A-207ENST00000542790 PHF20Q9BVI0 1012 aa14.15□□□□□ -0.14
VPS33A-207ENST00000542790 JADE2Q9NQC1 790 aa14.15□□□□□ -0.14
VPS33A-207ENST00000542790 POLR3EQ9NVU0 708 aa14.15□□□□□ -0.14
VPS33A-207ENST00000542790 NR2E3Q9Y5X4 410 aa14.15□□□□□ -0.14
VPS33A-207ENST00000542790 ADAMTS3O15072 1205 aa14.14□□□□□ -0.15
VPS33A-207ENST00000542790 DTNBO60941 627 aa14.14□□□□□ -0.15
VPS33A-207ENST00000542790 GGPS1O95749 300 aa14.14□□□□□ -0.15
VPS33A-207ENST00000542790 CYP3A4P08684 503 aa14.14□□□□□ -0.15
VPS33A-207ENST00000542790 UBA1P22314 1058 aaKnown RBP14.14□□□□□ -0.15
VPS33A-207ENST00000542790 HMGN5P82970 282 aaKnown RBP14.14□□□□□ -0.15
VPS33A-207ENST00000542790 SP2Q02086 613 aa14.14□□□□□ -0.15
VPS33A-207ENST00000542790 TRIM29Q14134 588 aa14.14□□□□□ -0.15
VPS33A-207ENST00000542790 LRRC26Q2I0M4 334 aa14.14□□□□□ -0.15
VPS33A-207ENST00000542790 MYSM1Q5VVJ2 828 aa14.14□□□□□ -0.15
VPS33A-207ENST00000542790 CXCL17Q6UXB2 119 aa14.14□□□□□ -0.15
VPS33A-207ENST00000542790 ZNF710Q8N1W2 664 aa14.14□□□□□ -0.15
VPS33A-207ENST00000542790 RASGRP4Q8TDF6 673 aa14.14□□□□□ -0.15
VPS33A-207ENST00000542790 AFG1LQ8WV93 481 aa14.14□□□□□ -0.15
VPS33A-207ENST00000542790 MXRA8Q9BRK3 442 aa14.14□□□□□ -0.15
VPS33A-207ENST00000542790 MLXIPQ9HAP2 919 aa14.14□□□□□ -0.15
VPS33A-207ENST00000542790 KCNJ14Q9UNX9 436 aa14.14□□□□□ -0.15
VPS33A-207ENST00000542790 MYL3P08590 195 aa14.13□□□□□ -0.15
VPS33A-207ENST00000542790 USP11P51784 963 aa14.13□□□□□ -0.15
VPS33A-207ENST00000542790 SEMA3FQ13275 785 aa14.13□□□□□ -0.15
VPS33A-207ENST00000542790 SNX17Q15036 470 aa14.13□□□□□ -0.15
VPS33A-207ENST00000542790 NPY5RQ15761 445 aa14.13□□□□□ -0.15
VPS33A-207ENST00000542790 DGKDQ16760 1214 aa14.13□□□□□ -0.15
VPS33A-207ENST00000542790 METTL7BQ6UX53 244 aa14.13□□□□□ -0.15
VPS33A-207ENST00000542790 NIPA1Q7RTP0 329 aa14.13□□□□□ -0.15
VPS33A-207ENST00000542790 PPTC7Q8NI37 304 aa14.13□□□□□ -0.15
VPS33A-207ENST00000542790 CRYGNQ8WXF5 182 aa14.13□□□□□ -0.15
VPS33A-207ENST00000542790 TMX3Q96JJ7 454 aa14.13□□□□□ -0.15
VPS33A-207ENST00000542790 SPATA33Q96N06 139 aa14.13□□□□□ -0.15
VPS33A-207ENST00000542790 MTG1Q9BT17 334 aaPredicted RBP14.13□□□□□ -0.15
VPS33A-207ENST00000542790 SEZ6LQ9BYH1 1024 aa14.13□□□□□ -0.15
VPS33A-207ENST00000542790 BRMS1Q9HCU9 246 aa14.13□□□□□ -0.15
VPS33A-207ENST00000542790 LCTP09848 1927 aa14.12□□□□□ -0.15
VPS33A-207ENST00000542790 A0A0U1RQG5 324 aaPredicted RBP14.12□□□□□ -0.15
VPS33A-207ENST00000542790 M0R2N6 131 aa14.12□□□□□ -0.15
VPS33A-207ENST00000542790 MEIS1O00470 390 aa14.12□□□□□ -0.15
VPS33A-207ENST00000542790 PPFIA4O75335 1185 aa14.12□□□□□ -0.15
VPS33A-207ENST00000542790 CD2BP2O95400 341 aaKnown RBP14.12□□□□□ -0.15
VPS33A-207ENST00000542790 MMP3P08254 477 aa14.12□□□□□ -0.15
VPS33A-207ENST00000542790 HOXB1P14653 301 aaPredicted RBP14.12□□□□□ -0.15
VPS33A-207ENST00000542790 PURAQ00577 322 aaKnown RBP14.12□□□□□ -0.15
VPS33A-207ENST00000542790 KRT25Q7Z3Z0 450 aa14.12□□□□□ -0.15
VPS33A-207ENST00000542790 FAM184AQ8NB25 1140 aa14.12□□□□□ -0.15
VPS33A-207ENST00000542790 CYP2W1Q8TAV3 490 aa14.12□□□□□ -0.15
VPS33A-207ENST00000542790 KCNH7Q9NS40 1196 aa14.12□□□□□ -0.15
VPS33A-207ENST00000542790 GJB4Q9NTQ9 266 aa14.12□□□□□ -0.15
VPS33A-207ENST00000542790 CCDC194A0A1B0GVG4 234 aa14.11□□□□□ -0.15
VPS33A-207ENST00000542790 FAM86B1E9PN63 330 aa14.11□□□□□ -0.15
VPS33A-207ENST00000542790 NOP56O00567 594 aaKnown RBP14.11□□□□□ -0.15
VPS33A-207ENST00000542790 ATP9AO75110 1047 aa14.11□□□□□ -0.15
VPS33A-207ENST00000542790 FAM86B2P0C5J1 330 aa14.11□□□□□ -0.15
VPS33A-207ENST00000542790 CIITAP33076 1130 aa14.11□□□□□ -0.15
VPS33A-207ENST00000542790 KRT2P35908 639 aa14.11□□□□□ -0.15
VPS33A-207ENST00000542790 RTP1P59025 263 aa14.11□□□□□ -0.15
VPS33A-207ENST00000542790 DSG2Q14126 1118 aa14.11□□□□□ -0.15
VPS33A-207ENST00000542790 NONOQ15233 471 aaKnown RBP eCLIP14.11□□□□□ -0.15
VPS33A-207ENST00000542790 HSDL1Q3SXM5 330 aa14.11□□□□□ -0.15
VPS33A-207ENST00000542790 GPR153Q6NV75 609 aa14.11□□□□□ -0.15
VPS33A-207ENST00000542790 CYFIP1Q7L576 1253 aa14.11□□□□□ -0.15
VPS33A-207ENST00000542790 C7orf61Q8IZ16 206 aa14.11□□□□□ -0.15
VPS33A-207ENST00000542790 TBCKQ8TEA7 893 aa14.11□□□□□ -0.15
VPS33A-207ENST00000542790 ATP11BQ9Y2G3 1177 aa14.11□□□□□ -0.15
VPS33A-207ENST00000542790 KIF3AQ9Y496 699 aa14.11□□□□□ -0.15
VPS33A-207ENST00000542790 BRCA2P51587 3418 aa14.1□□□□□ -0.15
VPS33A-207ENST00000542790 ARVCFO00192 962 aa14.1□□□□□ -0.15
VPS33A-207ENST00000542790 SORBS3O60504 671 aa14.1□□□□□ -0.15
VPS33A-207ENST00000542790 MMP1P03956 469 aa14.1□□□□□ -0.15
VPS33A-207ENST00000542790 ARP10275 920 aa14.1□□□□□ -0.15
VPS33A-207ENST00000542790 HOXD8P13378 290 aaPredicted RBP14.1□□□□□ -0.15
VPS33A-207ENST00000542790 KCNA2P16389 499 aa14.1□□□□□ -0.15
VPS33A-207ENST00000542790 CDK7P50613 346 aa14.1□□□□□ -0.15
VPS33A-207ENST00000542790 SETQ01105 290 aaPredicted RBP14.1□□□□□ -0.15
VPS33A-207ENST00000542790 ITGA7Q13683 1181 aa14.1□□□□□ -0.15
VPS33A-207ENST00000542790 SAFBQ15424 915 aaKnown RBP eCLIP14.1□□□□□ -0.15
VPS33A-207ENST00000542790 TRIM60Q495X7 471 aa14.1□□□□□ -0.15
VPS33A-207ENST00000542790 KRT40Q6A162 431 aa14.1□□□□□ -0.15
VPS33A-207ENST00000542790 ANKRD33Q7Z3H0 272 aa14.1□□□□□ -0.15
VPS33A-207ENST00000542790 PLA2G4DQ86XP0 818 aa14.1□□□□□ -0.15
VPS33A-207ENST00000542790 C8orf76Q96K31 380 aa14.1□□□□□ -0.15
VPS33A-207ENST00000542790 TOX2Q96NM4 488 aa14.1□□□□□ -0.15
VPS33A-207ENST00000542790 AGO4Q9HCK5 861 aaKnown RBP14.1□□□□□ -0.15
VPS33A-207ENST00000542790 MROH7Q68CQ1 1323 aa14.1□□□□□ -0.15
VPS33A-207ENST00000542790 MYH6P13533 1939 aa14.09□□□□□ -0.15
VPS33A-207ENST00000542790 IGLV3-22A0A075B6J6 115 aa14.09□□□□□ -0.15
VPS33A-207ENST00000542790 POTEB3A0JP26 581 aa14.09□□□□□ -0.15
VPS33A-207ENST00000542790 DCDC2CA8MYV0 355 aa14.09□□□□□ -0.15
VPS33A-207ENST00000542790 EMP3P54852 163 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms